Prupe.4G133500_v2.0.a1

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000364
Physical Location & Seq
Forward (+)
7393454 .. 7396870
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G133500.1

Sequence Viewer

Length: 744 bp
ATGGAAGCTTTCAGCTTTGAGAGGAAGATTAAGCATTACAGCAACTATCAGAGGATACTCCTTGTTGGAGAAGGAGACTTCTCTTTTTCTGTTTGCTTAGCCAGAGCTTTTGGCTTGGCTGTCAACATGGTTGCCACTTCTCTTGACTCCAGAGAGTCTCTGATGCTGAAGTACTCAAAAGCTTTGAGCAATGTGAAAGAATTAGAGGCAAGGGGATGTATAGTATTGCATGAGGTGGATGTCCACAGCATGAGCCAACACCCTTTCCTGATTAGATTACGCTTTGATCGCATAATCTATAATTTTCCTCATGCCGGTTACTTGCTTGGTCCCTTTTCTTCTGAACGCAACAGGTTCCAAATTTGGTTTCATCAGGATTTGATCAGGGGATTCCTAAAAAATGCACGCGAACTGCTGACCGCGATAGGAGAAATTCATGTGACACACAAGACAACATTTCCTTTCAGTGAATGGAAAATAGTGGAGTTAGCACATGAGGTTGGGTTATATCTGGTTGATGAAGAACCGTTCTCACTATGGGATTATCCAGGTTATGAAAATAAGAGAGGAGATGGGATGTGTGATCAAACTTTTCCGGTTGGAATGTGTAGCACCTTCAAATTTGCCAAGCTGTTCCACCATTCTAGCCCTTCTTGTTTCCACCTTGGCATTACTGCTTCGGGTCCATGGTCTGGTTATTCTGGAATTAATGGTCCTCACATGGAAAGGCCATTTTGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

248

Amino Acids

28.36

Weight (kDa)

6.89

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 692
AccII CGCG 2 cut(s) 408, 422
AciI CCGC 1 cut(s) 420
AcsI RAATTY 3 cut(s) 360, 432, 620
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 314, 692
AgsI TTSAA 1 cut(s) 619
AjnI CCWGG 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 5 cut(s) 8, 15, 107, 182, 631
AluI AGCT 5 cut(s) 8, 15, 107, 182, 631
Alw26I GTCTC 2 cut(s) 69, 162
AoxI GGCC 1 cut(s) 728
ApoI RAATTY 3 cut(s) 360, 432, 620
AseI ATTAAT 1 cut(s) 708
AspS9I GGNCC 3 cut(s) 329, 683, 713
AvaII GGWCC 3 cut(s) 329, 683, 713
BccI CCATC 1 cut(s) 566
BciT130I CCWGG 1 cut(s) 549
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 2 cut(s) 381, 583
BcoDI GTCTC 2 cut(s) 69, 162
BfaI CTAG 1 cut(s) 645
BfuI GTATCC 1 cut(s) 48
BlpI GCTNAGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 3 cut(s) 329, 683, 713
BmgT120I GGNCC 3 cut(s) 329, 683, 713
BmiI GGNNCC 3 cut(s) 331, 356, 684
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 664, 686
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 692
Bse118I RCCGGY 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 664, 686
BseGI GGATG 3 cut(s) 221, 244, 582
BseLI CCNNNNNNNGG 2 cut(s) 314, 692
BseMI GCAATG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 582
Bsh1236I CGCG 2 cut(s) 408, 422
BshFI GGCC 1 cut(s) 730
BsiSI CCGG 2 cut(s) 315, 596
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 314, 692
BsmAI GTCTC 2 cut(s) 69, 162
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 1 cut(s) 730
Bsp143I GATC 3 cut(s) 286, 381, 583
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 686
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 730
BspFNI CGCG 2 cut(s) 408, 422
BspLI GGNNCC 3 cut(s) 331, 356, 684
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 664, 686
BssMI GATC 3 cut(s) 286, 381, 583
BssT1I CCWWGG 2 cut(s) 664, 686
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 686
BstF5I GGATG 3 cut(s) 221, 244, 582
BstFNI CGCG 2 cut(s) 408, 422
BstKTI GATC 3 cut(s) 289, 384, 586
BstMAI GTCTC 2 cut(s) 69, 162
BstMBI GATC 3 cut(s) 286, 381, 583
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstUI CGCG 2 cut(s) 408, 422
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 730
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 3 cut(s) 221, 244, 582
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 3 cut(s) 329, 683, 713
Csp6I GTAC 1 cut(s) 172
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 8 cut(s) 127, 230, 250, 311, 437, 494, 687, 721
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 97
DpnI GATC 3 cut(s) 288, 383, 585
DpnII GATC 3 cut(s) 286, 381, 583
Eco130I CCWWGG 2 cut(s) 664, 686
Eco47I GGWCC 3 cut(s) 329, 683, 713
Eco57I CTGAAG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 2 cut(s) 664, 686
ErhI CCWWGG 2 cut(s) 664, 686
FaeI CATG 8 cut(s) 130, 233, 253, 314, 440, 497, 690, 724
FaqI GGGAC 1 cut(s) 315
FatI CATG 8 cut(s) 126, 229, 249, 310, 436, 493, 686, 720
FbaI TGATCA 2 cut(s) 381, 583
FokI GGATG 3 cut(s) 228, 251, 589
FspBI CTAG 1 cut(s) 645
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 1 cut(s) 730
HapII CCGG 2 cut(s) 315, 596
Hin1II CATG 8 cut(s) 130, 233, 253, 314, 440, 497, 690, 724
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 6, 180
HinfI GANTC 3 cut(s) 146, 155, 390
HpaII CCGG 2 cut(s) 315, 596
Hpy166II GTNNAC 2 cut(s) 124, 244
Hpy188I TCNGA 3 cut(s) 51, 162, 343
Hpy188III TCNNGA 5 cut(s) 143, 150, 268, 374, 702
Hpy8I GTNNAC 2 cut(s) 124, 244
HpyAV CCTTC 3 cut(s) 65, 625, 660
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 229, 404, 738
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 8 cut(s) 130, 233, 253, 314, 440, 497, 690, 724
Ksp22I TGATCA 2 cut(s) 381, 583
Kzo9I GATC 3 cut(s) 286, 381, 583
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 645
MaeIII GTNAC 2 cut(s) 317, 439
MalI GATC 3 cut(s) 288, 383, 585
MboI GATC 3 cut(s) 286, 381, 583
MboII GAAGA 3 cut(s) 37, 330, 533
MluCI AATT 6 cut(s) 200, 301, 360, 432, 620, 705
MlyI GAGTC 2 cut(s) 140, 164
MmeI TCCRAC 2 cut(s) 46, 580
MnlI CCTC 8 cut(s) 15, 45, 199, 226, 318, 490, 560, 726
MseI TTAA 2 cut(s) 30, 708
MspI CCGG 2 cut(s) 315, 596
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 2 cut(s) 408, 422
MwoI GCNNNNNNNGC 1 cut(s) 288
NcoI CCATGG 1 cut(s) 686
NdeII GATC 3 cut(s) 286, 381, 583
NlaIII CATG 8 cut(s) 130, 233, 253, 314, 440, 497, 690, 724
NlaIV GGNNCC 3 cut(s) 331, 356, 684
NmuCI GTSAC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 390
PflMI CCANNNNNTGG 1 cut(s) 692
PleI GAGTC 2 cut(s) 140, 163
PpsI GAGTC 2 cut(s) 140, 163
PshBI ATTAAT 1 cut(s) 708
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 3 cut(s) 331, 356, 684
PspPI GGNCC 3 cut(s) 329, 683, 713
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 2 cut(s) 30, 708
Sau3AI GATC 3 cut(s) 286, 381, 583
Sau96I GGNCC 3 cut(s) 329, 683, 713
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 2 cut(s) 140, 164
ScrFI CCNGG 1 cut(s) 549
SfaNI GCATC 1 cut(s) 153
SinI GGWCC 3 cut(s) 329, 683, 713
Sse9I AATT 6 cut(s) 200, 301, 360, 432, 620, 705
SsiI CCGC 1 cut(s) 420
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 2 cut(s) 664, 686
TaaI ACNGT 1 cut(s) 528
TasI AATT 6 cut(s) 200, 301, 360, 432, 620, 705
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 30, 708
Tru9I TTAA 2 cut(s) 30, 708
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 4 cut(s) 359, 425, 534, 570
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 3 cut(s) 329, 683, 713
VspI ATTAAT 1 cut(s) 708
XapI RAATTY 3 cut(s) 360, 432, 620
XspI CTAG 1 cut(s) 645
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.