Rh5DG173400

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000364
Physical Location & Seq
Forward (+)
18614224 .. 18615508
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG173400.1

Sequence Viewer

Length: 687 bp
ATGAACTCAAGGGAGATGCTGACTAAAAATGGAGAAATTCATGTCACACACAAGACATCATATCCTTTTAGTGAGTGGGAAATAGTGGAGTTAGCAGAGGAGGCTGAGTTATTCTTGGTTAAAGAAGAAGAGTTTTACAAACTGGATTATCCGGGATATGAAAACAAGAGAGGAGATGGGATTTGCGACGAGTCATTCCCTGTTGGGAAGTCGGGCACCTTCATCTTGCCAAGCGGTTGTACCCTAATACGAGGTTCCACCGAGAGAAGCTACCTCTCTTTTGGGTACAAGAATGTTGTTGATGCTCGGAGATCATCATGGAGGATCTTATCATCAGCAGAGCTGACGGAGGAGGCGAAAGGAAATAATATTCACCTGAAGCATCTAAAAACATATAGACAGAGAGTTGAATCAGAGATATCAATTATTTGTAGAGATATCATCTCAGTGCTTGATAGTCATCTCATCCCTTCGACTTCAGATGGTGAATCAACTGTGCATTATCATAAGATGAAAGGAGACTTTTATAGGTATCTCGCAGAAATCAAGGCCGGTGATGAGAAAGAGGAGGCTATCGAACAGTCGAAGAAAGCATATTACAAGGCCCTCACTGTTGCAGAAGTTAAGTTGCCTCCTACAAATCCCATCCGTAGCACATGGACTCGGTACGGATATATATTATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

228

Amino Acids

26.24

Weight (kDa)

6.02

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 2 - 57 9.7e-12 rRNA (uridine-N3-)-methyltransferase BTM5-like
14-3-3 PF00244 87 - 217 1.5e-45 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 2 cut(s) 398, 462
AfaI GTAC 3 cut(s) 241, 287, 668
AgsI TTSAA 1 cut(s) 410
AluBI AGCT 2 cut(s) 270, 343
AluI AGCT 2 cut(s) 270, 343
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 549, 603
ApoI RAATTY 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 365, 497, 566
BaeGI GKGCMC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 215
BccI CCATC 3 cut(s) 170, 476, 653
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 513
Bme1390I CCNGG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 2 cut(s) 217, 256
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 6, 292, 391
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 459
BseGI GGATG 2 cut(s) 465, 645
BseJI GATNNNNATC 1 cut(s) 459
BseMII CTCAG 2 cut(s) 96, 459
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 4 cut(s) 113, 186, 365, 581
BseSI GKGCMC 1 cut(s) 218
BshFI GGCC 2 cut(s) 551, 605
BshNI GGYRCC 1 cut(s) 215
BsiSI CCGG 2 cut(s) 152, 552
BsmAI GTCTC 1 cut(s) 513
BsnI GGCC 2 cut(s) 551, 605
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 311, 324
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 551, 605
BspCNI CTCAG 2 cut(s) 97, 458
BspLI GGNNCC 2 cut(s) 217, 256
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 551
BssMI GATC 2 cut(s) 311, 324
Bst4CI ACNGT 3 cut(s) 496, 582, 613
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 105, 445
BstF5I GGATG 2 cut(s) 465, 645
BstKTI GATC 2 cut(s) 314, 327
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 2 cut(s) 311, 324
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 2 cut(s) 551, 605
BtsCI GGATG 2 cut(s) 465, 645
BtsIMutI CAGTG 2 cut(s) 453, 609
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 1 cut(s) 604
Csp6I GTAC 3 cut(s) 240, 286, 667
CviAII CATG 3 cut(s) 41, 318, 657
CviJI RGCY 6 cut(s) 104, 270, 343, 551, 572, 605
CviKI_1 RGCY 6 cut(s) 104, 270, 343, 551, 572, 605
CviQI GTAC 3 cut(s) 240, 286, 667
DdeI CTNAG 2 cut(s) 105, 445
DpnI GATC 2 cut(s) 313, 326
DpnII GATC 2 cut(s) 311, 324
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco32I GATATC 2 cut(s) 420, 439
Eco57I CTGAAG 2 cut(s) 398, 462
EcoO109I RGGNCCY 1 cut(s) 604
EcoRV GATATC 2 cut(s) 420, 439
FaeI CATG 3 cut(s) 44, 321, 660
FatI CATG 3 cut(s) 40, 317, 656
FokI GGATG 2 cut(s) 452, 632
HaeIII GGCC 2 cut(s) 551, 605
HapII CCGG 2 cut(s) 152, 552
Hin1II CATG 3 cut(s) 44, 321, 660
HinfI GANTC 4 cut(s) 191, 410, 488, 661
HpaII CCGG 2 cut(s) 152, 552
HphI GGTGA 3 cut(s) 365, 497, 566
Hpy188I TCNGA 3 cut(s) 309, 415, 481
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 229, 480
HpyCH4III ACNGT 3 cut(s) 496, 582, 613
HpyCH4V TGCA 2 cut(s) 499, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 105, 445
Hsp92II CATG 3 cut(s) 44, 321, 660
Kzo9I GATC 2 cut(s) 311, 324
LpnPI CCDG 5 cut(s) 128, 165, 213, 389, 565
LweI GCATC 3 cut(s) 6, 292, 391
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 313, 326
MboI GATC 2 cut(s) 311, 324
MboII GAAGA 3 cut(s) 137, 140, 598
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 2 cut(s) 36, 423
MlyI GAGTC 2 cut(s) 200, 655
MseI TTAA 2 cut(s) 120, 624
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 2 cut(s) 152, 552
MspR9I CCNGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 311, 324
NlaIII CATG 3 cut(s) 44, 321, 660
NlaIV GGNNCC 2 cut(s) 217, 256
NmuCI GTSAC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 2 cut(s) 410, 488
PfoI TCCNGGA 1 cut(s) 151
PleI GAGTC 2 cut(s) 199, 655
PpsI GAGTC 2 cut(s) 199, 655
PspN4I GGNNCC 2 cut(s) 217, 256
PspPI GGNCC 1 cut(s) 604
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 3 cut(s) 241, 287, 668
RsaNI GTAC 3 cut(s) 240, 286, 667
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 2 cut(s) 120, 624
Sau3AI GATC 2 cut(s) 311, 324
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 2 cut(s) 200, 655
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 218
SetI ASST 7 cut(s) 221, 256, 272, 276, 345, 378, 533
SfaNI GCATC 3 cut(s) 6, 292, 391
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 36, 423
SsiI CCGC 1 cut(s) 234
SspI AATATT 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 496, 582, 613
TaqI TCGA 3 cut(s) 473, 576, 584
TasI AATT 2 cut(s) 36, 423
TfiI GAWTC 2 cut(s) 410, 488
Tru1I TTAA 2 cut(s) 120, 624
Tru9I TTAA 2 cut(s) 120, 624
TscAI CASTG 2 cut(s) 453, 616
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 5 cut(s) 17, 29, 174, 211, 527
TspGWI ACGGA 3 cut(s) 362, 638, 684
TspRI CASTG 2 cut(s) 453, 616
XapI RAATTY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.