Rmu_sc0005861.1_g000002

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005861.1
OG0000364
Physical Location & Seq
Forward (+)
4674 .. 6919
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005861.1_g000002.1.cds

Sequence Viewer

Length: 948 bp
atggaagtctttgggtttgagaagcgtatcaagcactacaccaactatcagagaatactcttggtcggagaaggagacttctcctttgccgtttccttagccagagctttcggctcttccaccgagatggtcgctacttctctcgacaccagaggtaaaaaaatcttggttccgagaatactcttggtcggagaaggaggcttctcccttgccgtttccttagccagagctttcggctcttccaccgagatggtcgctacttctctcgacaccagagagtcattgagggagaagtattcaaaggctatgagcaatgtgatggaattggagaacaggggatgcagagtacttcttgaagtggatgtgcacagaatgagccaacacccttttctgagttgttttcggtttgatcgaataatctacaattttcctcatgccggttacttgcacggtcaatcatcatccgagcacaaccagtttcaaatttggttccatcaggatttggtgaggggattcttcaagaatgcgcgtgaaatgcttaccgaaataggagaaattcatgtgacacacaagacaacatatcctttcagtcgatgggaaatagtgaagttagcagaagaggttgggttgtatttgcttcaggaagaaaaattctcaaaatgggattatccaggttatgaaaataagagaggagctgggttatgtgatcaaaattttcctgtaggagaatgtagcaccttcaaatttgccaagctattgtaccattctaccccttccagttactgcattgacttgagctctttgatgactatggatagatatgcagttgcagaaagcttctataagcttgctatggcatttgcccctgtcccagatcttcatataatgtggttacttcatttatgtgatgcacatcaagatatgcagtcgtgggcagaatctgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

315

Amino Acids

36.13

Weight (kDa)

6.36

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 529
AcsI RAATTY 5 cut(s) 483, 555, 650, 712, 743
AcuI CTGAAG 1 cut(s) 623
AfaI GTAC 2 cut(s) 348, 761
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 5 cut(s) 300, 356, 482, 520, 742
AjnI CCWGG 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 7 cut(s) 107, 230, 695, 754, 798, 837, 847
AluI AGCT 7 cut(s) 107, 230, 695, 754, 798, 837, 847
Alw21I GWGCWC 3 cut(s) 369, 471, 800
Alw26I GTCTC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 365
AlwNI CAGNNNCTG 2 cut(s) 783, 941
ApaLI GTGCAC 1 cut(s) 365
ApoI RAATTY 5 cut(s) 483, 555, 650, 712, 743
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 800
Bbv12I GWGCWC 3 cut(s) 369, 471, 800
BccI CCATC 5 cut(s) 121, 244, 313, 501, 588
BceAI ACGGC 2 cut(s) 74, 197
BciT130I CCWGG 1 cut(s) 672
BclI TGATCA 1 cut(s) 706
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 720
BglII AGATCT 1 cut(s) 874
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 672
BmiI GGNNCC 2 cut(s) 171, 491
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 2 cut(s) 329, 898
Bpu10I CCTNAGC 2 cut(s) 97, 220
BpuEI CTTGAG 1 cut(s) 814
BsaBI GATNNNNATC 1 cut(s) 912
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 2 cut(s) 475, 777
Bse3DI GCAATG 1 cut(s) 319
Bse8I GATNNNNATC 1 cut(s) 912
BseBI CCWGG 1 cut(s) 672
BseGI GGATG 3 cut(s) 344, 367, 461
BseJI GATNNNNATC 1 cut(s) 912
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 475, 777
BseRI GAGGAG 1 cut(s) 705
BseSI GKGCMC 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 529
BsiHKAI GWGCWC 3 cut(s) 369, 471, 800
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 854
BsmI GAATGC 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 369, 471, 800
Bsp143I GATC 3 cut(s) 409, 706, 874
BspCNI CTCAG 1 cut(s) 384
BspFNI CGCG 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 171, 491
BspQI GCTCTTC 2 cut(s) 121, 244
BsrDI GCAATG 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 2 cut(s) 475, 777
BssAI RCCGGY 1 cut(s) 437
BssMI GATC 3 cut(s) 409, 706, 874
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 3 cut(s) 121, 244, 612
BstAPI GCANNNNNTGC 1 cut(s) 941
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 4 cut(s) 97, 220, 392, 945
BstF5I GGATG 3 cut(s) 344, 367, 461
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 3 cut(s) 412, 709, 877
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 409, 706, 874
BstMWI GCNNNNNNNGC 3 cut(s) 31, 535, 941
BstNI CCWGG 1 cut(s) 672
BstSCI CCNGG 1 cut(s) 670
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 369
BstUI CGCG 1 cut(s) 529
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 2 cut(s) 127, 250
BstYI RGATCY 1 cut(s) 874
BtsCI GGATG 3 cut(s) 344, 367, 461
Cac8I GCNNGC 1 cut(s) 849
CaiI CAGNNNCTG 2 cut(s) 783, 941
CfoI GCGC 1 cut(s) 529
Cfr10I RCCGGY 1 cut(s) 437
Csp6I GTAC 2 cut(s) 347, 760
CviAII CATG 2 cut(s) 434, 560
CviQI GTAC 2 cut(s) 347, 760
DdeI CTNAG 4 cut(s) 97, 220, 392, 945
DpnI GATC 3 cut(s) 411, 708, 876
DpnII GATC 3 cut(s) 409, 706, 874
Eam1104I CTCTTC 3 cut(s) 121, 244, 612
EarI CTCTTC 3 cut(s) 121, 244, 612
Ecl136II GAGCTC 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 800
Eco53kI GAGCTC 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 800
FaeI CATG 2 cut(s) 437, 563
FaqI GGGAC 1 cut(s) 854
FatI CATG 2 cut(s) 433, 559
FbaI TGATCA 1 cut(s) 706
FokI GGATG 3 cut(s) 351, 374, 448
FriOI GRGCYC 1 cut(s) 800
GlaI GCGC 1 cut(s) 528
GsaI CCCAGC 1 cut(s) 699
HapII CCGG 1 cut(s) 438
HhaI GCGC 1 cut(s) 529
Hin1II CATG 2 cut(s) 437, 563
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HindIII AAGCTT 2 cut(s) 835, 845
HinfI GANTC 3 cut(s) 278, 513, 938
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 517
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 6 cut(s) 51, 68, 174, 191, 393, 466
Hpy188III TCNNGA 7 cut(s) 143, 266, 353, 497, 520, 641, 917
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 4 cut(s) 65, 188, 748, 783
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 8 cut(s) 342, 367, 448, 786, 824, 830, 911, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 535, 941
HpyF3I CTNAG 4 cut(s) 97, 220, 392, 945
Hsp92II CATG 2 cut(s) 437, 563
HspAI GCGC 1 cut(s) 527
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 3 cut(s) 409, 706, 874
LguI GCTCTTC 2 cut(s) 121, 244
LmnI GCTCC 1 cut(s) 692
LweI GCATC 2 cut(s) 329, 898
MaeIII GTNAC 4 cut(s) 440, 562, 779, 891
MalI GATC 3 cut(s) 411, 708, 876
MboI GATC 3 cut(s) 409, 706, 874
MboII GAAGA 6 cut(s) 108, 231, 508, 629, 656, 869
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 3 cut(s) 369, 471, 800
MluCI AATT 7 cut(s) 323, 424, 483, 555, 650, 712, 743
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 2 cut(s) 46, 169
MnlI CCTC 7 cut(s) 146, 191, 279, 441, 501, 613, 683
MslI CAYNNNNRTG 3 cut(s) 125, 248, 903
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 672
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 3 cut(s) 31, 535, 941
NdeII GATC 3 cut(s) 409, 706, 874
NlaIII CATG 2 cut(s) 437, 563
NlaIV GGNNCC 2 cut(s) 171, 491
NmuCI GTSAC 1 cut(s) 562
PciSI GCTCTTC 2 cut(s) 121, 244
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 2 cut(s) 513, 938
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 800
Psp6I CCWGG 1 cut(s) 670
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 2 cut(s) 171, 491
PstNI CAGNNNCTG 2 cut(s) 783, 941
PsuI RGATCY 1 cut(s) 874
RsaI GTAC 2 cut(s) 348, 761
RsaNI GTAC 2 cut(s) 347, 760
RseI CAYNNNNRTG 3 cut(s) 125, 248, 903
SacI GAGCTC 1 cut(s) 800
SapI GCTCTTC 2 cut(s) 121, 244
Sau3AI GATC 3 cut(s) 409, 706, 874
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 3 cut(s) 369, 471, 800
SfaNI GCATC 2 cut(s) 329, 898
SfcI CTRYAG 1 cut(s) 720
SmiMI CAYNNNNRTG 3 cut(s) 125, 248, 903
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
Sse9I AATT 7 cut(s) 323, 424, 483, 555, 650, 712, 743
SstI GAGCTC 1 cut(s) 800
StyD4I CCNGG 1 cut(s) 670
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 4 cut(s) 144, 267, 412, 592
TasI AATT 7 cut(s) 323, 424, 483, 555, 650, 712, 743
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 2 cut(s) 513, 938
TseFI GTSAC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 4 cut(s) 548, 693, 869, 887
VneI GTGCAC 1 cut(s) 365
XapI RAATTY 5 cut(s) 483, 555, 650, 712, 743
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.