FvH4_3g14892

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000364
Physical Location & Seq
Forward (+)
9217577 .. 9218443
867 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14892.t1

Sequence Viewer

Length: 372 bp
ATGGGGGAGGCTATTGCAGACACTAAACAAGAGAAACAGGTGGTGCATTACAGCAGCAAACAGAAGATACTGTTAGTGGGTGAGGGTAACTTCTCTTTTGCTTCTTGTTTGGCTAAAGGATTTGGCTCTGCTAAGAACATGGTTGCCACTTCCCTTGACTCCAGAGAGTCAGTATTGGCCAAGTATTCAAATGCAGCACCAAGAAACTTAACAGAATTGGAGGACATGGGATGTGTTATACTGCATGAAGTGGATGTACACACAATGAGGCGGCACCCTCTCCTACTCGATCAACTGTTTGATCGTATAGTCTTTAACTTTCCTCATGCTGGTTTCATTTTTATGGAAAACCAGAAGAGCCAGATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

124

Amino Acids

13.79

Weight (kDa)

6.96

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 24 - 118 2.9e-30 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AciI CCGC 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 177
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 189
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 54, 194
AsuHPI GGTGA 1 cut(s) 92
BalI TGGCCA 1 cut(s) 179
BanI GGYRCC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BbvI GCAGC 2 cut(s) 66, 206
BisI GCNGC 3 cut(s) 55, 195, 272
BlsI GCNGC 3 cut(s) 56, 196, 273
BmiI GGNNCC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 329
BseGI GGATG 2 cut(s) 236, 259
BseLI CCNNNNNNNGG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 66, 206
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 329
BsnI GGCC 1 cut(s) 179
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 289, 301, 363
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 256
BssMI GATC 3 cut(s) 289, 301, 363
Bst4CI ACNGT 2 cut(s) 72, 297
Bst6I CTCTTC 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 236, 259
BstKTI GATC 3 cut(s) 292, 304, 366
BstMBI GATC 3 cut(s) 289, 301, 363
BstV1I GCAGC 2 cut(s) 66, 206
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 2 cut(s) 236, 259
Csp6I GTAC 1 cut(s) 257
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 4 cut(s) 139, 226, 245, 326
CviJI RGCY 5 cut(s) 11, 113, 126, 179, 360
CviKI_1 RGCY 5 cut(s) 11, 113, 126, 179, 360
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 291, 303, 365
DpnII GATC 3 cut(s) 289, 301, 363
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
FaeI CATG 4 cut(s) 142, 229, 248, 329
FaiI YATR 7 cut(s) 140, 227, 239, 246, 308, 327, 344
FatI CATG 4 cut(s) 138, 225, 244, 325
Fnu4HI GCNGC 3 cut(s) 55, 195, 272
FokI GGATG 2 cut(s) 243, 266
Fsp4HI GCNGC 3 cut(s) 55, 195, 272
GluI GCNGC 3 cut(s) 55, 195, 272
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 179
Hin1II CATG 4 cut(s) 142, 229, 248, 329
HinfI GANTC 2 cut(s) 158, 167
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 72, 297
HpyCH4V TGCA 4 cut(s) 17, 46, 194, 244
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 4 cut(s) 142, 229, 248, 329
Kzo9I GATC 3 cut(s) 289, 301, 363
LguI GCTCTTC 1 cut(s) 350
LpnPI CCDG 4 cut(s) 23, 175, 315, 365
Lsp1109I GCAGC 2 cut(s) 66, 206
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 291, 303, 365
MboI GATC 3 cut(s) 289, 301, 363
MboII GAAGA 2 cut(s) 76, 367
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 2 cut(s) 152, 176
MnlI CCTC 5 cut(s) 76, 214, 261, 288, 333
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 2 cut(s) 209, 315
MslI CAYNNNNRTG 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 179
NdeII GATC 3 cut(s) 289, 301, 363
NlaIII CATG 4 cut(s) 142, 229, 248, 329
NlaIV GGNNCC 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 350
PkrI GCNGC 3 cut(s) 56, 196, 273
PleI GAGTC 2 cut(s) 152, 175
PpsI GAGTC 2 cut(s) 152, 175
PspN4I GGNNCC 1 cut(s) 275
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 209, 315
SatI GCNGC 3 cut(s) 55, 195, 272
Sau3AI GATC 3 cut(s) 289, 301, 363
SchI GAGTC 2 cut(s) 152, 176
SetI ASST 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 271
TaaI ACNGT 2 cut(s) 72, 297
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 215
TatI WGTACW 1 cut(s) 256
TauI GCSGC 1 cut(s) 274
Tru1I TTAA 2 cut(s) 209, 315
Tru9I TTAA 2 cut(s) 209, 315
TseI GCWGC 2 cut(s) 54, 194
TspDTI ATGAA 2 cut(s) 261, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.