Rmu_sc0005861.1_g000004

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005861.1
OG0000364
Physical Location & Seq
Forward (+)
10670 .. 11990
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005861.1_g000004.1.cds

Sequence Viewer

Length: 1086 bp
atggatttctctagcttagagagagtgatgaagaatttagagagactgattaaggagttagagacactgactaaggagtcagagagttttgttaatccgttacgaagagcgagtaaacagttacgtgcactaattaacaagcagaaaatggatttgtctatcttagagagactagctaagcagtttgacagagtggttaaacagtttgagagactccctaagcaatttgggagactgtttaaacagtttgagagactggctaagcagtttggaagactgtttaaacagtttgagagactagctaagcagtttggaagactagttaaacagtttgagagactggctacgcagtttgatagaatgtttaaacagtttgagagactcgctaagcagtttgaaggaccggttaaacggtttgagagactcgttaagcggtttgagagactatttaaagagggaggaaggattaatcactatagcaggtcccagaagatactgttagtgggagagggggacttttcttttgctctttgcttggccagagctttcggctctgctgacaacatggttgctacttctctcgactccaaagggtccttaatgatgaactactcaaaagctatgaccaacttgctggaattagaaggcagggaatgcaagatatttcataaagtcgatgcctgtgtcatgcgttatcatccttaccttctcttcatgaggtttgatcgcataatctataattttccacacgcgggctacatgaatggttcctcttcttctgagcgtaacgcaactcaaatttggttccataagaatttggtcaggaggttcttcattagtgcacgtgaaatgctgactacagatggagaaattcatgtgacgcacaagacaacatatccttttagtgagtggaaattagtgaaaatagcagaagatgttgggttgtatctggttggtgaagaaaggttctcactatttgattatcccggctatgaaaataagagaggagctgggatctgtgatcaaacttttccggtgggaatgtctagcaccttcagatttgccaagaactacttgtactgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

361

Amino Acids

42.71

Weight (kDa)

9.85

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 471
AccII CGCG 1 cut(s) 752
AciI CCGC 2 cut(s) 433, 752
AclWI GGATC 1 cut(s) 1022
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 4 cut(s) 34, 798, 814, 870
AcuI CTGAAG 1 cut(s) 1039
AcvI CACGTG 1 cut(s) 845
AfaI GTAC 1 cut(s) 1079
AfiI CCNNNNNNNGG 1 cut(s) 752
AgeI ACCGGT 1 cut(s) 403
AgsI TTSAA 1 cut(s) 398
AhlI ACTAGT 1 cut(s) 319
AluBI AGCT 6 cut(s) 15, 176, 302, 545, 620, 1010
AluI AGCT 6 cut(s) 15, 176, 302, 545, 620, 1010
Alw21I GWGCWC 2 cut(s) 130, 844
Alw44I GTGCAC 2 cut(s) 126, 840
AlwI GGATC 1 cut(s) 1022
AoxI GGCC 1 cut(s) 537
ApaLI GTGCAC 2 cut(s) 126, 840
ApoI RAATTY 4 cut(s) 34, 798, 814, 870
ArsI GACNNNNNNTTYG 2 cut(s) 506, 538
AseI ATTAAT 1 cut(s) 468
AsiGI ACCGGT 1 cut(s) 403
AspS9I GGNCC 3 cut(s) 401, 483, 594
AsuC2I CCSGG 1 cut(s) 987
AsuHPI GGTGA 1 cut(s) 968
AvaII GGWCC 3 cut(s) 401, 483, 594
BaeGI GKGCMC 2 cut(s) 130, 844
BalI TGGCCA 1 cut(s) 539
BbrPI CACGTG 1 cut(s) 845
BbsI GAAGAC 2 cut(s) 280, 322
Bbv12I GWGCWC 2 cut(s) 130, 844
BccI CCATC 1 cut(s) 857
BclI TGATCA 1 cut(s) 1021
BcnI CCSGG 1 cut(s) 987
BcuI ACTAGT 1 cut(s) 319
BfaI CTAG 5 cut(s) 12, 173, 299, 320, 1047
BfmI CTRYAG 2 cut(s) 475, 858
BfuAI ACCTGC 1 cut(s) 471
BlpI GCTNAGC 4 cut(s) 177, 261, 303, 387
Bme1390I CCNGG 1 cut(s) 987
Bme18I GGWCC 3 cut(s) 401, 483, 594
BmgT120I GGNCC 3 cut(s) 401, 483, 594
BmiI GGNNCC 4 cut(s) 485, 595, 769, 806
BmrFI CCNGG 1 cut(s) 987
BmsI GCATC 1 cut(s) 667
BpiI GAAGAC 2 cut(s) 280, 322
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 4 cut(s) 177, 261, 303, 387
BpuMI CCSGG 1 cut(s) 987
BsaAI YACGTR 2 cut(s) 125, 845
BsaWI WCCGGW 2 cut(s) 403, 1033
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 2 cut(s) 261, 345
BseGI GGATG 1 cut(s) 697
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 2 cut(s) 261, 345
BseRI GAGGAG 1 cut(s) 1020
BseSI GKGCMC 2 cut(s) 130, 844
BseYI CCCAGC 1 cut(s) 1010
Bsh1236I CGCG 1 cut(s) 752
BshFI GGCC 1 cut(s) 539
BshTI ACCGGT 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 130, 844
BsiSI CCGG 3 cut(s) 404, 987, 1034
BslFI GGGAC 2 cut(s) 469, 527
BslI CCNNNNNNNGG 1 cut(s) 752
BsmFI GGGAC 2 cut(s) 469, 527
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 130, 844
Bsp143I GATC 3 cut(s) 724, 1014, 1021
Bsp1720I GCTNAGC 4 cut(s) 177, 261, 303, 387
BspACI CCGC 2 cut(s) 433, 752
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 752
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 4 cut(s) 485, 595, 769, 806
BspMI ACCTGC 1 cut(s) 471
BspPI GGATC 1 cut(s) 1022
BspQI GCTCTTC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 2 cut(s) 261, 345
BssAI RCCGGY 1 cut(s) 403
BssMI GATC 3 cut(s) 724, 1014, 1021
Bst6I CTCTTC 3 cut(s) 100, 716, 778
BstAPI GCANNNNNTGC 1 cut(s) 654
BstBAI YACGTR 2 cut(s) 125, 845
BstC8I GCNNGC 1 cut(s) 754
BstDEI CTNAG 9 cut(s) 16, 72, 163, 177, 219, 261, 303, 387, 780
BstF5I GGATG 1 cut(s) 697
BstFNI CGCG 1 cut(s) 752
BstKTI GATC 3 cut(s) 727, 1017, 1024
BstMBI GATC 3 cut(s) 724, 1014, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 985
BstSFI CTRYAG 2 cut(s) 475, 858
BstSLI GKGCMC 2 cut(s) 130, 844
BstUI CGCG 1 cut(s) 752
BstV2I GAAGAC 2 cut(s) 280, 322
BstX2I RGATCY 1 cut(s) 1014
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 1 cut(s) 1014
BsuRI GGCC 1 cut(s) 539
BtsCI GGATG 1 cut(s) 697
BtsIMutI CAGTG 1 cut(s) 65
BveI ACCTGC 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 754
CciI TCATGA 1 cut(s) 714
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 401, 483, 594
CseI GACGC 1 cut(s) 889
Csp6I GTAC 1 cut(s) 1078
CspAI ACCGGT 1 cut(s) 403
CviAII CATG 5 cut(s) 565, 688, 715, 760, 875
CviQI GTAC 1 cut(s) 1078
DdeI CTNAG 9 cut(s) 16, 72, 163, 177, 219, 261, 303, 387, 780
DpnI GATC 3 cut(s) 726, 1016, 1023
DpnII GATC 3 cut(s) 724, 1014, 1021
DraI TTTAAA 4 cut(s) 241, 283, 367, 451
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 3 cut(s) 100, 716, 778
EarI CTCTTC 3 cut(s) 100, 716, 778
Eco47I GGWCC 3 cut(s) 401, 483, 594
Eco57I CTGAAG 1 cut(s) 1039
Eco72I CACGTG 1 cut(s) 845
EcoO109I RGGNCCY 2 cut(s) 483, 594
FaeI CATG 5 cut(s) 568, 691, 718, 763, 878
FalI AAGNNNNNCTT 1 cut(s) 1058
FaqI GGGAC 2 cut(s) 469, 527
FatI CATG 5 cut(s) 564, 687, 714, 759, 874
FauI CCCGC 1 cut(s) 745
FbaI TGATCA 1 cut(s) 1021
FokI GGATG 1 cut(s) 684
FspBI CTAG 5 cut(s) 12, 173, 299, 320, 1047
GsaI CCCAGC 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 539
HapII CCGG 3 cut(s) 404, 987, 1034
HgaI GACGC 1 cut(s) 889
Hin1II CATG 5 cut(s) 568, 691, 718, 763, 878
HinfI GANTC 5 cut(s) 77, 213, 381, 423, 584
HpaII CCGG 3 cut(s) 404, 987, 1034
HphI GGTGA 1 cut(s) 968
Hpy166II GTNNAC 3 cut(s) 116, 128, 842
Hpy188I TCNGA 3 cut(s) 82, 781, 1058
Hpy188III TCNNGA 3 cut(s) 581, 715, 823
Hpy8I GTNNAC 3 cut(s) 116, 128, 842
HpyAV CCTTC 5 cut(s) 392, 456, 638, 716, 1063
HpyCH4IV ACGT 2 cut(s) 124, 844
HpyCH4V TGCA 3 cut(s) 128, 657, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 654
HpyF3I CTNAG 9 cut(s) 16, 72, 163, 177, 219, 261, 303, 387, 780
HpySE526I ACGT 2 cut(s) 124, 844
Hsp92II CATG 5 cut(s) 568, 691, 718, 763, 878
Ksp22I TGATCA 1 cut(s) 1021
Kzo9I GATC 3 cut(s) 724, 1014, 1021
LguI GCTCTTC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 1007
LweI GCATC 1 cut(s) 667
MaeI CTAG 5 cut(s) 12, 173, 299, 320, 1047
MaeII ACGT 2 cut(s) 124, 844
MaeIII GTNAC 4 cut(s) 99, 120, 785, 877
MalI GATC 3 cut(s) 726, 1016, 1023
MboI GATC 3 cut(s) 724, 1014, 1021
MflI RGATCY 1 cut(s) 1014
MhlI GDGCHC 2 cut(s) 130, 844
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 9 cut(s) 34, 132, 224, 638, 739, 798, 814, 870, 914
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 5 cut(s) 86, 207, 375, 417, 578
MnlI CCTC 7 cut(s) 448, 452, 502, 711, 781, 819, 998
Mox20I TGGCCA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 539
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 3 cut(s) 404, 987, 1034
MspR9I CCNGG 1 cut(s) 987
MssI GTTTAAAC 3 cut(s) 241, 283, 367
Mva1269I GAATGC 1 cut(s) 659
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 1 cut(s) 654
NciI CCSGG 1 cut(s) 987
NdeII GATC 3 cut(s) 724, 1014, 1021
NlaIII CATG 5 cut(s) 568, 691, 718, 763, 878
NlaIV GGNNCC 4 cut(s) 485, 595, 769, 806
NmuCI GTSAC 1 cut(s) 877
PagI TCATGA 1 cut(s) 714
PciSI GCTCTTC 1 cut(s) 100
PctI GAATGC 1 cut(s) 659
PinAI ACCGGT 1 cut(s) 403
PleI GAGTC 5 cut(s) 85, 207, 375, 417, 578
PmaCI CACGTG 1 cut(s) 845
PmeI GTTTAAAC 3 cut(s) 241, 283, 367
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 5 cut(s) 85, 207, 375, 417, 578
Ppu21I YACGTR 2 cut(s) 125, 845
PpuMI RGGWCCY 2 cut(s) 483, 594
PshBI ATTAAT 1 cut(s) 468
Psp5II RGGWCCY 2 cut(s) 483, 594
PspCI CACGTG 1 cut(s) 845
PspFI CCCAGC 1 cut(s) 1010
PspN4I GGNNCC 4 cut(s) 485, 595, 769, 806
PspPI GGNCC 3 cut(s) 401, 483, 594
PspPPI RGGWCCY 2 cut(s) 483, 594
PsrI GAACNNNNNNTAC 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 1014
RsaI GTAC 1 cut(s) 1079
RsaNI GTAC 1 cut(s) 1078
SapI GCTCTTC 1 cut(s) 100
Sau3AI GATC 3 cut(s) 724, 1014, 1021
Sau96I GGNCC 3 cut(s) 401, 483, 594
SchI GAGTC 5 cut(s) 86, 207, 375, 417, 578
ScrFI CCNGG 1 cut(s) 987
SduI GDGCHC 2 cut(s) 130, 844
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 2 cut(s) 475, 858
SinI GGWCC 3 cut(s) 401, 483, 594
SpeI ACTAGT 1 cut(s) 319
Sse9I AATT 9 cut(s) 34, 132, 224, 638, 739, 798, 814, 870, 914
SsiI CCGC 2 cut(s) 433, 752
SspMI CTAG 5 cut(s) 12, 173, 299, 320, 1047
StyD4I CCNGG 1 cut(s) 985
TaiI ACGT 2 cut(s) 127, 847
TaqI TCGA 2 cut(s) 582, 675
TasI AATT 9 cut(s) 34, 132, 224, 638, 739, 798, 814, 870, 914
TatI WGTACW 1 cut(s) 1077
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 877
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 8 cut(s) 44, 620, 656, 703, 776, 823, 863, 1008
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 72
VneI GTGCAC 2 cut(s) 126, 840
VpaK11BI GGWCC 3 cut(s) 401, 483, 594
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 4 cut(s) 34, 798, 814, 870
XspI CTAG 5 cut(s) 12, 173, 299, 320, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.