Rw5G015700

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000364
Physical Location & Seq
Forward (+)
19491779 .. 19494590
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G015700.1

Sequence Viewer

Length: 771 bp
ATGGAAGTCTTTGGGTTTGAGAAGCGTATCAAGCACTACACCAACTATCAGAGAATACTCTTGGTCGGAGAAGGAGACTTCTCCTTTGCCGTTTCGTTAGCCAGAGCTTTCGGCTCTTCCACCGAGATGGTCGCTACTTCTCTCGACACCAGAGAGTCATTGAGGGAGAAGTATTCAAAGGCTATGAGCAATGTGATGGAATTGGAGAACAGGGGATGCAGAGTACTTCATGAAGTGGATGTGCACAGAATGAGCCAACACCCTTTTCTGAGTTGTATTCGGTTTGATCGAATAATCTACAATTTTCCTCATGCCGGTTACTTGCACGGTCAATCATCATCCGAGCACAACCAGTCTCAAATTTGGTTCCATCAGGATTTGGTGAGGGGATTCTTCAAGAATGCGTGTGAAATGCTTACCGAAATAGGAGAAATTCATGTGACACACAAGACAACATATGCTTTCAAGGTTGGGTTGTATTTGCTTCAGGAAGAAAAATTCTCAAAATGGGATTATCCAGGTTATGAAAATAAGAGAGGAGCTGGGTCATGTGATCAAACTTTTCCTGTAGGAGAATGTAGCACCTTCAAATTTGCCAAGCTATTGTACCATTCTACCCCTTCCAGTTACTGCATTGACTTGGTTCGGGCGTACGGTCAGGATTCTCGAATTAACGGTCCTTACATGCACCACTTTGTCCAGTCCACCCTTGCCTCCCTAAATAACTTTTTCCATAAGAAATTAGCCACTTCACAATGCACAAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

256

Amino Acids

29.57

Weight (kDa)

8.4

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 20 - 179 5.6e-46 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 360, 432, 497, 590
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 3 cut(s) 225, 608, 653
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 4 cut(s) 177, 397, 466, 589
AjnI CCWGG 1 cut(s) 517
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 3 cut(s) 107, 542, 601
AluI AGCT 3 cut(s) 107, 542, 601
Alw21I GWGCWC 2 cut(s) 246, 348
Alw26I GTCTC 2 cut(s) 69, 360
Alw44I GTGCAC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 630
ApaLI GTGCAC 1 cut(s) 242
ApoI RAATTY 4 cut(s) 360, 432, 497, 590
ArsI GACNNNNNNTTYG 4 cut(s) 68, 100, 661, 693
AspS9I GGNCC 1 cut(s) 677
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 677
BaeGI GKGCMC 1 cut(s) 246
Bbv12I GWGCWC 2 cut(s) 246, 348
BccI CCATC 3 cut(s) 121, 190, 378
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 519
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 69, 360
BfmI CTRYAG 1 cut(s) 567
BmcAI AGTACT 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 1 cut(s) 677
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 352, 624, 700
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 519
BseGI GGATG 3 cut(s) 221, 244, 338
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 3 cut(s) 352, 624, 700
BseRI GAGGAG 1 cut(s) 552
BseSI GKGCMC 1 cut(s) 246
BseYI CCCAGC 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 246, 348
BsiSI CCGG 1 cut(s) 315
BsiWI CGTACG 1 cut(s) 651
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 69, 360
BsmI GAATGC 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 246, 348
Bsp143I GATC 2 cut(s) 286, 553
BspCNI CTCAG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 3 cut(s) 352, 624, 700
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 2 cut(s) 286, 553
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 3 cut(s) 329, 656, 677
Bst6I CTCTTC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 221, 244, 338
BstKTI GATC 2 cut(s) 289, 556
BstMAI GTCTC 2 cut(s) 69, 360
BstMBI GATC 2 cut(s) 286, 553
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 221, 244, 338
CaiI CAGNNNCTG 1 cut(s) 630
CciI TCATGA 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 224, 607, 652
CviAII CATG 6 cut(s) 230, 311, 437, 549, 685, 768
CviJI RGCY 8 cut(s) 101, 107, 114, 182, 255, 542, 601, 746
CviKI_1 RGCY 8 cut(s) 101, 107, 114, 182, 255, 542, 601, 746
CviQI GTAC 3 cut(s) 224, 607, 652
DdeI CTNAG 1 cut(s) 269
DpnI GATC 2 cut(s) 288, 555
DpnII GATC 2 cut(s) 286, 553
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 677
Eco57I CTGAAG 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 517
FaeI CATG 6 cut(s) 233, 314, 440, 552, 688, 771
FatI CATG 6 cut(s) 229, 310, 436, 548, 684, 767
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 553
FokI GGATG 3 cut(s) 228, 251, 325
GsaI CCCAGC 1 cut(s) 546
HapII CCGG 1 cut(s) 315
Hin1II CATG 6 cut(s) 233, 314, 440, 552, 688, 771
HinfI GANTC 3 cut(s) 155, 390, 662
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 244, 705
Hpy188I TCNGA 4 cut(s) 51, 68, 270, 343
Hpy188III TCNNGA 7 cut(s) 143, 230, 374, 397, 488, 659, 666
Hpy8I GTNNAC 2 cut(s) 244, 705
HpyAV CCTTC 3 cut(s) 65, 595, 630
HpyCH4III ACNGT 3 cut(s) 329, 656, 677
HpyCH4V TGCA 6 cut(s) 219, 244, 325, 633, 688, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 6 cut(s) 233, 314, 440, 552, 688, 771
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 2 cut(s) 286, 553
LguI GCTCTTC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 539
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 3 cut(s) 317, 439, 626
MalI GATC 2 cut(s) 288, 555
MboI GATC 2 cut(s) 286, 553
MboII GAAGA 3 cut(s) 108, 385, 503
MhlI GDGCHC 2 cut(s) 246, 348
MluCI AATT 8 cut(s) 200, 301, 360, 432, 497, 590, 669, 740
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 156, 318, 378, 530, 724
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 286, 553
NlaIII CATG 6 cut(s) 233, 314, 440, 552, 688, 771
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 1 cut(s) 688
PagI TCATGA 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 390, 662
Pfl23II CGTACG 1 cut(s) 651
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 1 cut(s) 517
PspLI CGTACG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 677
PstNI CAGNNNCTG 1 cut(s) 630
RsaI GTAC 3 cut(s) 225, 608, 653
RsaNI GTAC 3 cut(s) 224, 607, 652
RseI CAYNNNNRTG 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 672
Sau3AI GATC 2 cut(s) 286, 553
Sau96I GGNCC 1 cut(s) 677
ScaI AGTACT 1 cut(s) 225
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 2 cut(s) 246, 348
SetI ASST 6 cut(s) 109, 471, 523, 544, 587, 603
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 8 cut(s) 200, 301, 360, 432, 497, 590, 669, 740
StyD4I CCNGG 1 cut(s) 517
TaaI ACNGT 3 cut(s) 329, 656, 677
TaqI TCGA 3 cut(s) 144, 289, 667
TasI AATT 8 cut(s) 200, 301, 360, 432, 497, 590, 669, 740
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 2 cut(s) 390, 662
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseFI GTSAC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 4 cut(s) 218, 246, 425, 540
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 4 cut(s) 360, 432, 497, 590
XceI RCATGY 1 cut(s) 688
ZrmI AGTACT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.