RchiOBHm_Chr5g0024511

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000364
Physical Location & Seq
Forward (+)
18640187 .. 18641588
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30426

Sequence Viewer

Length: 714 bp
ATGGAAAAGGCTATTGCAGATACTAAACAAGAGAAACGGATTATGCATTACAGCAGCAATCAGAAGATACTGTTAGTGGGTGAAGGCAATTTCTCTTTTGCTTCTTGTTTAGCTAAAGTATTTGGCTCTGCTAAGAACATGGTTGCCACTTCCCGCGAATCCAGAGAGTCAGTATTGGCCCAGTATTCAGATGCAGCACCAAGAAACTTGACAGAATTGGAGTACATGGGATGTGATATACTGCATGAGGTGGATGTACACACCATGAGGCAACACCCTTTCTTAATCGATCAACTGTTTGATCGGATAGTCTTCAACTTTCCTCATGCTGGTTTCGTTTTTATGGAAAGCAAGAAGAAGAAAACCAAGTATTTTATGGAAAACAGCAAGAGGCAAATCAAGTTGCATCAGGATTTGGTGAGGAGATTCTTCGCCAGCGCATGTGAGATGCTGAAAGAAAGTGGAGAAGTTCATGTCACTCACAAGACCGCATATCCATTCAGTGAGTGGGAGATAGTGAAATTAGCAGGAGAGGCTGGGTTATATCTGGTTGAGGAAGCATCGTTTTCAAGAGAGGATTATCCCGGTTATTTAAACAAGAGAGGAAGTGGGAAGAAATGCAACCGCACATTTCCTGTTGGACAATGTAGCACCTACAAATTTGCCAAGCTGCCGCTTCTTGAATTTTCATTCACAACAATAAAGATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

237

Amino Acids

27.26

Weight (kDa)

8.96

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 24 - 201 1.3e-50 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AciI CCGC 4 cut(s) 154, 489, 625, 674
AcsI RAATTY 2 cut(s) 659, 683
AfaI GTAC 2 cut(s) 224, 258
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 316, 570, 683
AluBI AGCT 2 cut(s) 113, 670
AluI AGCT 2 cut(s) 113, 670
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 3 cut(s) 54, 194, 670
ApoI RAATTY 2 cut(s) 659, 683
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 2 cut(s) 92, 430
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 66, 206, 657
BcnI CCSGG 1 cut(s) 585
BisI GCNGC 4 cut(s) 55, 195, 671, 674
BlsI GCNGC 4 cut(s) 56, 196, 672, 675
Bme1390I CCNGG 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 4 cut(s) 181, 415, 438, 569
BmuI ACTGGG 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 288
BseGI GGATG 2 cut(s) 236, 259
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 3 cut(s) 66, 206, 657
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 288
BsiSI CCGG 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 329
BsnI GGCC 1 cut(s) 179
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 289, 301, 705
BspACI CCGC 4 cut(s) 154, 489, 625, 674
BspANI GGCC 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 1 cut(s) 156
BsrGI TGTACA 1 cut(s) 256
BsrI ACTGG 1 cut(s) 181
BssMI GATC 3 cut(s) 289, 301, 705
Bst4CI ACNGT 2 cut(s) 72, 297
BstAUI TGTACA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 236, 259
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 3 cut(s) 292, 304, 708
BstMBI GATC 3 cut(s) 289, 301, 705
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 583
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 66, 206, 657
BstV2I GAAGAC 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 1 cut(s) 179
BsuTUI ATCGAT 1 cut(s) 288
BtsCI GGATG 2 cut(s) 236, 259
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 436
CfoI GCGC 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 288
Csp6I GTAC 2 cut(s) 223, 257
CviAII CATG 8 cut(s) 139, 226, 245, 265, 326, 441, 473, 709
CviJI RGCY 6 cut(s) 11, 113, 126, 179, 536, 670
CviKI_1 RGCY 6 cut(s) 11, 113, 126, 179, 536, 670
CviQI GTAC 2 cut(s) 223, 257
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 291, 303, 707
DpnII GATC 3 cut(s) 289, 301, 705
DraI TTTAAA 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 48
FaeI CATG 8 cut(s) 142, 229, 248, 268, 329, 444, 476, 712
FatI CATG 8 cut(s) 138, 225, 244, 264, 325, 440, 472, 708
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 4 cut(s) 55, 195, 671, 674
FokI GGATG 2 cut(s) 243, 266
Fsp4HI GCNGC 4 cut(s) 55, 195, 671, 674
GlaI GCGC 1 cut(s) 439
GluI GCNGC 4 cut(s) 55, 195, 671, 674
GsaI CCCAGC 1 cut(s) 540
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 585
HhaI GCGC 1 cut(s) 440
Hin1II CATG 8 cut(s) 142, 229, 248, 268, 329, 444, 476, 712
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 3 cut(s) 158, 167, 426
HpaII CCGG 1 cut(s) 585
HphI GGTGA 2 cut(s) 92, 430
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 63, 190, 306
Hpy188III TCNNGA 4 cut(s) 162, 410, 570, 680
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 72, 297
HpyCH4V TGCA 6 cut(s) 17, 46, 194, 244, 406, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 8 cut(s) 142, 229, 248, 268, 329, 444, 476, 712
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 3 cut(s) 289, 301, 705
Lsp1109I GCAGC 3 cut(s) 66, 206, 657
LweI GCATC 4 cut(s) 181, 415, 438, 569
MaeIII GTNAC 1 cut(s) 475
MalI GATC 3 cut(s) 291, 303, 707
MboI GATC 3 cut(s) 289, 301, 705
MboII GAAGA 6 cut(s) 76, 304, 367, 370, 421, 625
MluCI AATT 5 cut(s) 88, 215, 521, 659, 683
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 9 cut(s) 241, 261, 333, 384, 414, 526, 547, 568, 596
Mph1103I ATGCAT 1 cut(s) 48
MseI TTAA 2 cut(s) 284, 593
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 533
NciI CCSGG 1 cut(s) 585
NdeII GATC 3 cut(s) 289, 301, 705
NlaIII CATG 8 cut(s) 142, 229, 248, 268, 329, 444, 476, 712
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 48
NspI RCATGY 1 cut(s) 444
PfeI GAWTC 2 cut(s) 158, 426
PkrI GCNGC 4 cut(s) 56, 196, 672, 675
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 536
PspPI GGNCC 1 cut(s) 178
RsaI GTAC 2 cut(s) 224, 258
RsaNI GTAC 2 cut(s) 223, 257
SaqAI TTAA 2 cut(s) 284, 593
SatI GCNGC 4 cut(s) 55, 195, 671, 674
Sau3AI GATC 3 cut(s) 289, 301, 705
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 585
SetI ASST 4 cut(s) 115, 252, 656, 672
SfaNI GCATC 4 cut(s) 181, 415, 438, 569
Sse9I AATT 5 cut(s) 88, 215, 521, 659, 683
SsiI CCGC 4 cut(s) 154, 489, 625, 674
StyD4I CCNGG 1 cut(s) 583
TaaI ACNGT 2 cut(s) 72, 297
TaqI TCGA 1 cut(s) 288
TasI AATT 5 cut(s) 88, 215, 521, 659, 683
TatI WGTACW 2 cut(s) 222, 256
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 2 cut(s) 158, 426
Tru1I TTAA 2 cut(s) 284, 593
Tru9I TTAA 2 cut(s) 284, 593
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 3 cut(s) 54, 194, 670
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 461, 678
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 508
XapI RAATTY 2 cut(s) 659, 683
XceI RCATGY 1 cut(s) 444
XcmI CCANNNNNNNNNTGG 2 cut(s) 373, 504
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.