Prupe.4G133400_v2.0.a1

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000364
Physical Location & Seq
Forward (+)
7388458 .. 7390498
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G133400.1

Sequence Viewer

Length: 813 bp
ATGGAAGTGTTTAGCCCTGAGAGAAGGATTAAGCATTACAGCAGCTATCAGAAGATACTCTTAGTGGGAGAAGGTGACTTCTCTTTTTCTGTTTGCTTAGCCAGAGCTTTTGGCTTGGCCGTCAACATGGTTGCGACTTCTCTTGACTCCAGAGAGTCTTTGATGCTAAAGTATTCAGAAGCTATAAACAATGTGGAGGAATTAGAGGACAGGGGATGCATAGTATTGCATAAGGTAGATGTCAACAGAATGAGCCAACACCCTTTGTTGATTAGCGTACGCTTTGATCGCATAATCTATAATTTTCCTCACGCGGGTTACGTGCACGGTCCCTTTTCTTCTGAACGGTTCCAAATTTGGTTTCATCAGGATTTGGTGAGGCGATTCTTCAAGAATGCACACGAAATGCTGACCGTGGTAGGAGAGATTCATGTAACACACAAGACAACATTTCCTTTCACTGAATGGAAAATAGTGGAGTTAGCACAAGAGGTTGGGTTACGTCTGGTTGATGAAGAACAGTTCTCACTGTGGGATTATCCAGGTTATGAAAATAGAAGAGGAGTTGGGATGTGTGATGACACTTTTCCTGTTGGAATGTCAAGCACCTTCATATTTGCCAAGCGCTCTGCTGCCAGTTTCCACCCCGGTGCTTTGTGCATTAGTTTATGGTCAGCTGACATAGTAGATATGGCTTGCACTTATTTAGAGAGCTTGGAGAGGAAGAAGCCAAAGCATGGCCACAAGAATTTGAGATCTCCATCTCGACCCAGAAAAAAGAACAAGAAATTGAGATCTCCATATCATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

271

Amino Acids

31.31

Weight (kDa)

8.88

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 737
AccII CGCG 1 cut(s) 314
AciI CCGC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 117, 739
AcsI RAATTY 2 cut(s) 354, 748
AfaI GTAC 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 314, 737
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AleI CACNNNNGTG 1 cut(s) 648
AluBI AGCT 5 cut(s) 45, 107, 182, 677, 714
AluI AGCT 5 cut(s) 45, 107, 182, 677, 714
Alw21I GWGCWC 1 cut(s) 327
Alw44I GTGCAC 1 cut(s) 323
Aor51HI AGCGCT 1 cut(s) 626
AoxI GGCC 2 cut(s) 117, 739
ApaLI GTGCAC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 42, 632
ApoI RAATTY 2 cut(s) 354, 748
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 648
AsuHPI GGTGA 2 cut(s) 86, 388
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 327
BalI TGGCCA 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 54, 619
BccI CCATC 1 cut(s) 769
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 543
BcnI CCSGG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 628
BglII AGATCT 2 cut(s) 755, 794
BisI GCNGC 2 cut(s) 43, 633
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 2 cut(s) 44, 634
Bme1390I CCNGG 2 cut(s) 543, 648
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 331, 350
BmrFI CCNGG 2 cut(s) 543, 648
BmsI GCATC 2 cut(s) 153, 206
BpmI CTGGAG 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 648
BsaAI YACGTR 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 414, 646
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 737
Bse1I ACTGG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 760
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 414, 646
BseGI GGATG 2 cut(s) 221, 576
BseJI GATNNNNATC 1 cut(s) 760
BseLI CCNNNNNNNGG 2 cut(s) 314, 737
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 576
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 2 cut(s) 54, 619
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 2 cut(s) 119, 741
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 648
BsiWI CGTACG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 314, 737
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 2 cut(s) 119, 741
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 286, 755, 794
Bsp1720I GCTNAGC 1 cut(s) 97
BspACI CCGC 1 cut(s) 314
BspANI GGCC 2 cut(s) 119, 741
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 331, 350
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 2 cut(s) 414, 646
BssMI GATC 3 cut(s) 286, 755, 794
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 5 cut(s) 329, 348, 415, 522, 531
Bst6I CTCTTC 1 cut(s) 553
BstBAI YACGTR 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 3 cut(s) 18, 61, 97
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 221, 576
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 628
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 3 cut(s) 289, 758, 797
BstMBI GATC 3 cut(s) 286, 755, 794
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 2 cut(s) 541, 646
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 54, 619
BstX2I RGATCY 2 cut(s) 755, 794
BstYI RGATCY 2 cut(s) 755, 794
BsuRI GGCC 2 cut(s) 119, 741
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 221, 576
BtsIMutI CAGTG 2 cut(s) 459, 527
Cac8I GCNNGC 1 cut(s) 697
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 278
CviAII CATG 3 cut(s) 127, 431, 737
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 3 cut(s) 18, 61, 97
DpnI GATC 3 cut(s) 288, 757, 796
DpnII GATC 3 cut(s) 286, 755, 794
EaeI YGGCCR 2 cut(s) 117, 739
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 329
Eco47III AGCGCT 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 221
FaeI CATG 3 cut(s) 130, 434, 740
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 315
FatI CATG 3 cut(s) 126, 430, 736
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 43, 633
FokI GGATG 2 cut(s) 228, 583
Fsp4HI GCNGC 2 cut(s) 43, 633
GlaI GCGC 1 cut(s) 626
GluI GCNGC 2 cut(s) 43, 633
GsuI CTGGAG 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 628
HaeIII GGCC 2 cut(s) 119, 741
HapII CCGG 1 cut(s) 648
HhaI GCGC 1 cut(s) 627
Hin1II CATG 3 cut(s) 130, 434, 740
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 2 cut(s) 124, 244
HindII GTYRAC 2 cut(s) 124, 244
HinfI GANTC 4 cut(s) 146, 155, 384, 427
HpaII CCGG 1 cut(s) 648
HphI GGTGA 2 cut(s) 86, 388
Hpy166II GTNNAC 3 cut(s) 124, 244, 325
Hpy188I TCNGA 3 cut(s) 51, 178, 343
Hpy188III TCNNGA 5 cut(s) 143, 150, 368, 391, 765
Hpy8I GTNNAC 3 cut(s) 124, 244, 325
HpyAV CCTTC 3 cut(s) 18, 65, 619
HpyCH4III ACNGT 5 cut(s) 329, 348, 415, 522, 531
HpyCH4IV ACGT 2 cut(s) 321, 502
HpyCH4V TGCA 6 cut(s) 219, 229, 325, 398, 660, 699
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 3 cut(s) 18, 61, 97
HpySE526I ACGT 2 cut(s) 321, 502
Hsp92II CATG 3 cut(s) 130, 434, 740
HspAI GCGC 1 cut(s) 625
Kzo9I GATC 3 cut(s) 286, 755, 794
Lsp1109I GCAGC 2 cut(s) 54, 619
LweI GCATC 2 cut(s) 153, 206
MaeII ACGT 2 cut(s) 321, 502
MaeIII GTNAC 4 cut(s) 74, 317, 433, 498
MalI GATC 3 cut(s) 288, 757, 796
MboI GATC 3 cut(s) 286, 755, 794
MboII GAAGA 6 cut(s) 64, 330, 379, 527, 570, 736
MflI RGATCY 2 cut(s) 755, 794
MhlI GDGCHC 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 741
MluCI AATT 5 cut(s) 200, 301, 354, 748, 788
MluNI TGGCCA 1 cut(s) 741
MlyI GAGTC 2 cut(s) 140, 164
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 7 cut(s) 190, 199, 318, 372, 484, 554, 714
Mox20I TGGCCA 1 cut(s) 741
Mph1103I ATGCAT 1 cut(s) 221
MscI TGGCCA 1 cut(s) 741
MseI TTAA 2 cut(s) 30, 811
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 2 cut(s) 543, 648
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 648
NdeII GATC 3 cut(s) 286, 755, 794
NlaIII CATG 3 cut(s) 130, 434, 740
NlaIV GGNNCC 2 cut(s) 331, 350
NmuCI GTSAC 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 384, 427
Pfl23II CGTACG 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 2 cut(s) 44, 634
PleI GAGTC 2 cut(s) 140, 163
PpsI GAGTC 2 cut(s) 140, 163
Ppu21I YACGTR 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspLI CGTACG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 331, 350
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 2 cut(s) 755, 794
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 2 cut(s) 30, 811
SatI GCNGC 2 cut(s) 43, 633
Sau3AI GATC 3 cut(s) 286, 755, 794
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 2 cut(s) 140, 164
ScrFI CCNGG 2 cut(s) 543, 648
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 2 cut(s) 153, 206
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 5 cut(s) 200, 301, 354, 748, 788
SsiI CCGC 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 541, 646
TaaI ACNGT 5 cut(s) 329, 348, 415, 522, 531
TaiI ACGT 2 cut(s) 324, 505
TaqI TCGA 1 cut(s) 766
TasI AATT 5 cut(s) 200, 301, 354, 748, 788
TfiI GAWTC 2 cut(s) 384, 427
Tru1I TTAA 2 cut(s) 30, 811
Tru9I TTAA 2 cut(s) 30, 811
TscAI CASTG 2 cut(s) 466, 534
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 42, 632
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 5 cut(s) 353, 419, 528, 564, 601
TspRI CASTG 2 cut(s) 466, 534
Van91I CCANNNNNTGG 1 cut(s) 737
VneI GTGCAC 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 2 cut(s) 354, 748
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.