RLG00000032802

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000364
Physical Location & Seq
Forward (+)
19246695 .. 19247866
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032802

Sequence Viewer

Length: 693 bp
ATGGAAGAGGCTATAGCAGATACTAAACGAGAGAAAAGGATTATGCATTACAGCAGCAATCAGAAGATACTGTTAGTGGGTGAGGGCAACTTCTCTTTTGCTGCTTGTTTAGCCAAAGAGTTTGGCTCAGCGAAGAACATGGTTGCTACTTCTCTTGACTCCAAAGAGTCAGTAATGATCAAATACTCAAATGCAGCACCAAGCAACTTGAAGGAATTAGAGGACATGGGATGTGTAGTCTTGCATGAGGTGGATGTCCACACCATGAGACAGCACCCTCTTCTAGTTAATCAACTGTTTGATCGCGTAGTCTTTAACTTTCCTCATGCTGGCTTCATTTTCATGGAAAATCAGATGAGCCAAATCAAGTTGCATCAGGATTTGGTGAGGGGATTCTTCACCAGTGCATGTGAAATGCTGAAAGAAAGTGGAGAAGTTCATGTGACTCACAAGACATCACATCCATTCAGTAAGTGGGAGATAGTGAAATTAGCAGAAGAGACTGGATTATATCTGGTTGAGGAAGCATCGTTTACAAGAGGGGATTATCCTGGTTATTTAAACAAGAGAGGAAGTGGGAAGAAATGCAACCGTACATTTCCTGTTGGACAATGTAGCACCTACAAATTTGCCAAGCTGCCGCTTCTTGAATTTTCATTCACAACATTATATGATGATGTAAATAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

231

Amino Acids

26.16

Weight (kDa)

7.11

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 24 - 190 4.3e-55 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26485
fragaria_vesca FvH4_3g14860 FvH4_3g14860 FvH4_3g14861 FvH4_3g14862 FvH4_3g14862 FvH4_3g14880 FvH4_3g14880 FvH4_3g14890 FvH4_3g14891 FvH4_3g14892 FvH4_3g14901 FvH4_3g14902
malus_domestica MD05G1233500.v1.1 MD05G1233600.v1.1 MD10G1209900.v1.1 MD10G1210000.v1.1 MD10G1210100.v1.1 MD10G1210300.v1.1 MD10G1210400.v1.1
prunus_persica Prupe.4G132900_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133200_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133300_v2.0.a1 Prupe.4G133400_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133500_v2.0.a1 Prupe.4G133600_v2.0.a1 Prupe.4G133600_v2.0.a1
pyrus_communis pycom05g21110 pycom05g21120 pycom10g17840
rosa_chinensis RchiOBHm_Chr5g0024361 RchiOBHm_Chr5g0024391 RchiOBHm_Chr5g0024411 RchiOBHm_Chr5g0024431 RchiOBHm_Chr5g0024451 RchiOBHm_Chr5g0024461 RchiOBHm_Chr5g0024471 RchiOBHm_Chr5g0024481 RchiOBHm_Chr5g0024501 RchiOBHm_Chr5g0024511
rosa_laevigata RLG00000032799 RLG00000032800 RLG00000032801 RLG00000032802 RLG00000032803
rosa_multiflora Rmu_sc0000761.1_g000010 Rmu_sc0000761.1_g000014 Rmu_sc0000761.1_g000018 Rmu_sc0000761.1_g000025 Rmu_sc0005861.1_g000002 Rmu_sc0005861.1_g000004 Rmu_sc0005861.1_g000007 Rmu_sc0011809.1_g000001 Rmu_sc0011809.1_g000006
rosa_roxburghii Rroxscaffold_1G00054740 Rroxscaffold_1G00054750 Rroxscaffold_1G00054760 Rroxscaffold_1G00054770 Rroxscaffold_1G00054780 Rroxscaffold_1G00054790 Rroxscaffold_1G00054840 Rroxscaffold_1G00055860 Rroxscaffold_3G00237770 Rroxscaffold_6G00389330
rosa_rugosa Rorug05G0083300 Rorug05G0083400 Rorug05G0083400
rosa_samantha Rh5AG174100 Rh5AG174300 Rh5AG174600 Rh5AG174700 Rh5AG175000 Rh5AG175300 Rh5BG171000 Rh5BG171400 Rh5BG171500 Rh5BG171600 Rh5BG171700 Rh5BG172100 Rh5BG172300 Rh5BG172500 Rh5CG187400 Rh5CG187700 Rh5CG187900 Rh5CG188000 Rh5CG188200 Rh5CG188400 Rh5CG188500 Rh5CG188600 Rh5DG173200 Rh5DG173400 Rh5DG173500 Rh5DG173700 Rh5DG173900 Rh5DG174000 Rh5DG174100
rosa_wichuraiana Rw5G015700 Rw5G015730 Rw5G015740 Rw5G015770 Rw5G015790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 306
AciI CCGC 1 cut(s) 641
AcsI RAATTY 2 cut(s) 626, 650
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 2 cut(s) 211, 650
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 1 cut(s) 637
AluI AGCT 1 cut(s) 637
Alw26I GTCTC 2 cut(s) 262, 494
ApeKI GCWGC 4 cut(s) 54, 101, 194, 637
ApoI RAATTY 2 cut(s) 626, 650
AsuHPI GGTGA 3 cut(s) 92, 391, 397
BbvI GCAGC 4 cut(s) 66, 88, 206, 624
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 262, 494
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 5 cut(s) 55, 102, 195, 638, 641
BlpI GCTNAGC 1 cut(s) 127
BlsI GCNGC 5 cut(s) 56, 103, 196, 639, 642
Bme1390I CCNGG 1 cut(s) 552
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 382, 536
BplI GAGNNNNNCTC 2 cut(s) 110, 142
Bpu1102I GCTNAGC 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 402, 508
BseBI CCWGG 1 cut(s) 552
BseGI GGATG 3 cut(s) 236, 259, 460
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 402, 508
BseXI GCAGC 4 cut(s) 66, 88, 206, 624
Bsh1236I CGCG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 262, 494
Bsp143I GATC 2 cut(s) 177, 301
Bsp1720I GCTNAGC 1 cut(s) 127
BspACI CCGC 1 cut(s) 641
BspCNI CTCAG 1 cut(s) 140
BspFNI CGCG 1 cut(s) 306
BsrI ACTGG 2 cut(s) 402, 508
BssMI GATC 2 cut(s) 177, 301
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 3 cut(s) 72, 297, 593
Bst6I CTCTTC 2 cut(s) 285, 492
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 3 cut(s) 236, 259, 460
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 2 cut(s) 180, 304
BstMAI GTCTC 2 cut(s) 262, 494
BstMBI GATC 2 cut(s) 177, 301
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 4 cut(s) 66, 88, 206, 624
BtsCI GGATG 3 cut(s) 236, 259, 460
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 594
CviAII CATG 8 cut(s) 139, 226, 245, 265, 326, 343, 408, 440
CviJI RGCY 6 cut(s) 11, 113, 126, 333, 360, 637
CviKI_1 RGCY 6 cut(s) 11, 113, 126, 333, 360, 637
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 1 cut(s) 127
DpnI GATC 2 cut(s) 179, 303
DpnII GATC 2 cut(s) 177, 301
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 285, 492
EarI CTCTTC 2 cut(s) 285, 492
EcoRII CCWGG 1 cut(s) 550
EcoT22I ATGCAT 1 cut(s) 48
FaeI CATG 8 cut(s) 142, 229, 248, 268, 329, 346, 411, 443
FatI CATG 8 cut(s) 138, 225, 244, 264, 325, 342, 407, 439
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 5 cut(s) 55, 102, 195, 638, 641
FokI GGATG 3 cut(s) 243, 266, 447
Fsp4HI GCNGC 5 cut(s) 55, 102, 195, 638, 641
FspBI CTAG 1 cut(s) 284
GluI GCNGC 5 cut(s) 55, 102, 195, 638, 641
Hin1II CATG 8 cut(s) 142, 229, 248, 268, 329, 346, 411, 443
HinfI GANTC 4 cut(s) 158, 167, 393, 445
HphI GGTGA 3 cut(s) 92, 391, 397
Hpy166II GTNNAC 2 cut(s) 259, 534
Hpy188I TCNGA 2 cut(s) 63, 354
Hpy188III TCNNGA 3 cut(s) 155, 377, 647
Hpy8I GTNNAC 2 cut(s) 259, 534
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 3 cut(s) 72, 297, 593
HpyCH4V TGCA 6 cut(s) 46, 194, 244, 373, 407, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 8 cut(s) 142, 229, 248, 268, 329, 346, 411, 443
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 2 cut(s) 177, 301
LpnPI CCDG 8 cut(s) 315, 362, 415, 489, 500, 537, 564, 615
Lsp1109I GCAGC 4 cut(s) 66, 88, 206, 624
LweI GCATC 2 cut(s) 382, 536
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 179, 303
MboI GATC 2 cut(s) 177, 301
MboII GAAGA 7 cut(s) 17, 76, 145, 272, 388, 509, 592
MluCI AATT 4 cut(s) 215, 488, 626, 650
MlyI GAGTC 3 cut(s) 152, 176, 439
MmeI TCCRAC 1 cut(s) 586
MnlI CCTC 9 cut(s) 76, 214, 241, 288, 333, 381, 514, 533, 563
Mph1103I ATGCAT 1 cut(s) 48
MseI TTAA 3 cut(s) 288, 315, 560
MslI CAYNNNNRTG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 2 cut(s) 177, 301
NlaIII CATG 8 cut(s) 142, 229, 248, 268, 329, 346, 411, 443
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 48
NspI RCATGY 1 cut(s) 411
PfeI GAWTC 1 cut(s) 393
PkrI GCNGC 5 cut(s) 56, 103, 196, 639, 642
PleI GAGTC 3 cut(s) 152, 175, 439
PpsI GAGTC 3 cut(s) 152, 175, 439
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 288, 315, 560
SatI GCNGC 5 cut(s) 55, 102, 195, 638, 641
Sau3AI GATC 2 cut(s) 177, 301
SchI GAGTC 3 cut(s) 152, 176, 439
ScrFI CCNGG 1 cut(s) 552
SetI ASST 3 cut(s) 252, 623, 639
SfaNI GCATC 2 cut(s) 382, 536
SfcI CTRYAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 4 cut(s) 215, 488, 626, 650
SsiI CCGC 1 cut(s) 641
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 3 cut(s) 72, 297, 593
TasI AATT 4 cut(s) 215, 488, 626, 650
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 3 cut(s) 288, 315, 560
Tru9I TTAA 3 cut(s) 288, 315, 560
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 4 cut(s) 54, 101, 194, 637
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 4 cut(s) 325, 331, 428, 645
TspRI CASTG 1 cut(s) 409
XapI RAATTY 2 cut(s) 626, 650
XceI RCATGY 1 cut(s) 411
XcmI CCANNNNNNNNNTGG 1 cut(s) 471
XspI CTAG 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.