Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

6891544 .. 6892556

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGCATTTCCAGAGCGAGTACGATAGAGACAAGACCACCGACGAGTTCGGAAACCCTATCCGCCGGACTGAGGACCCGGTTCACCACGGTGTAACTGGAGCAACCGCCGGGTACGGCAGTCATGACACGACCGGAACAGGCTATGGAACTCATGGTACAACTGGTACAGACTACGGAACCCATGGTACAACTGGTACTGGCTTCGGAACTCATGGCACTGGGCCGACTGGCTTCGCTGCAACAACGGCCGGCGGCGTGACCTCCGTCCCACTTCACCGCTCTGACAGCTCAAGCTCTTCTGAAGATGATGGATATGGCGGAAGGAGGAAGAAGAAGGGTTTGAAGGAGAAGATAAAGGAGAAGCTACCAGGTGGAAAGCACAGGTCCGACGATCCCTACGGTGCGACTACTACACCTTACGGTGGTGGCCAACACCAGGAGAAGGGAATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

164

Amino Acids

17.15

Weight (kDa)

7.23

Isoelectric Point (pI)

20.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	13 - 163	2.2e-32	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	282
AciI	CCGC	5 cut(s)	64, 108, 255, 280, 321
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	3 cut(s)	249, 430, 481
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	6 cut(s)	23, 116, 160, 169, 190, 199
AfiI	CCNNNNNNNGG	4 cut(s)	73, 425, 439, 445
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	370, 438
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	291, 297, 367, 475
AluI	AGCT	4 cut(s)	291, 297, 367, 475
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	4 cut(s)	224, 249, 430, 481
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	76, 224, 387
AsuC2I	CCSGG	3 cut(s)	80, 112, 480
AsuHPI	GGTGA	2 cut(s)	77, 269
AvaII	GGWCC	2 cut(s)	76, 387
BaeI	ACNNNNGTAYC	2 cut(s)	106, 139
BalI	TGGCCA	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	2 cut(s)	305, 448
BceAI	ACGGC	2 cut(s)	133, 264
BciT130I	CCWGG	2 cut(s)	372, 440
BcnI	CCSGG	3 cut(s)	80, 112, 480
BcoDI	GTCTC	1 cut(s)	24
BisI	GCNGC	2 cut(s)	240, 256
BlsI	GCNGC	2 cut(s)	241, 257
Bme1390I	CCNGG	5 cut(s)	80, 112, 372, 440, 480
Bme18I	GGWCC	2 cut(s)	76, 387
BmgT120I	GGNCC	3 cut(s)	76, 224, 387
BmiI	GGNNCC	2 cut(s)	78, 181
BmrFI	CCNGG	5 cut(s)	80, 112, 372, 440, 480
BmrI	ACTGGG	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	231
BoxI	GACNNNNGTC	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	3 cut(s)	80, 112, 480
BsaJI	CCNNGG	2 cut(s)	88, 184
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 425, 439, 445
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	6 cut(s)	103, 169, 199, 205, 226, 235
BseBI	CCWGG	2 cut(s)	372, 440
BseDI	CCNNGG	2 cut(s)	88, 184
BseLI	CCNNNNNNNGG	4 cut(s)	73, 425, 439, 445
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	6 cut(s)	103, 169, 199, 205, 226, 235
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	226
Bsh1285I	CGRYCG	2 cut(s)	135, 252
BshFI	GGCC	4 cut(s)	226, 251, 432, 483
BsiEI	CGRYCG	2 cut(s)	135, 252
BsiSI	CCGG	6 cut(s)	67, 80, 111, 135, 252, 480
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	4 cut(s)	73, 425, 439, 445
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	4 cut(s)	226, 251, 432, 483
Bsp143I	GATC	2 cut(s)	394, 462
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	5 cut(s)	64, 108, 255, 280, 321
BspANI	GGCC	4 cut(s)	226, 251, 432, 483
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	78, 181
BspPI	GGATC	1 cut(s)	389
BspQI	GCTCTTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	6 cut(s)	103, 169, 199, 205, 226, 235
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	88, 184
BssMI	GATC	2 cut(s)	394, 462
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	372, 440
Bst4CI	ACNGT	3 cut(s)	92, 404, 425
Bst6I	CTCTTC	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	2 cut(s)	88, 184
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	397, 465
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	394, 462
BstMCI	CGRYCG	2 cut(s)	135, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 288
BstNI	CCWGG	2 cut(s)	372, 440
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	5 cut(s)	78, 110, 370, 438, 478
BstV1I	GCAGC	1 cut(s)	226
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	226, 251, 432, 483
BtgI	CCRYGG	2 cut(s)	88, 184
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	3 cut(s)	76, 224, 387
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	6 cut(s)	22, 115, 159, 168, 189, 198
CviAII	CATG	4 cut(s)	125, 155, 185, 215
CviQI	GTAC	6 cut(s)	22, 115, 159, 168, 189, 198
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	396, 464
DpnII	GATC	2 cut(s)	394, 462
EaeI	YGGCCR	3 cut(s)	249, 430, 481
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EciI	GGCGGA	2 cut(s)	53, 336
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	76, 387
Eco52I	CGGCCG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	370, 438
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	4 cut(s)	128, 158, 188, 218
FaiI	YATR	6 cut(s)	126, 147, 156, 186, 216, 318
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	124, 154, 184, 214
Fnu4HI	GCNGC	2 cut(s)	240, 256
Fsp4HI	GCNGC	2 cut(s)	240, 256
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	240, 256
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	4 cut(s)	226, 251, 432, 483
HapII	CCGG	6 cut(s)	67, 80, 111, 135, 252, 480
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	128, 158, 188, 218
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	473
HpaII	CCGG	6 cut(s)	67, 80, 111, 135, 252, 480
HphI	GGTGA	2 cut(s)	77, 269
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	5 cut(s)	53, 209, 286, 304, 391
Hpy188III	TCNNGA	2 cut(s)	13, 125
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	47, 395
HpyAV	CCTTC	4 cut(s)	318, 331, 340, 439
HpyCH4III	ACNGT	3 cut(s)	92, 404, 425
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 288
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	128, 158, 188, 218
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	394, 462
LguI	GCTCTTC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	226
MabI	ACCWGGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	94, 259
MalI	GATC	2 cut(s)	396, 464
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	2 cut(s)	394, 462
MboII	GAAGA	5 cut(s)	291, 317, 343, 346, 364
MlsI	TGGCCA	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	3 cut(s)	67, 274, 321
Mox20I	TGGCCA	1 cut(s)	432
MroNI	GCCGGC	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	432
MspI	CCGG	6 cut(s)	67, 80, 111, 135, 252, 480
MspR9I	CCNGG	5 cut(s)	80, 112, 372, 440, 480
MvaI	CCWGG	2 cut(s)	372, 440
MwoI	GCNNNNNNNGC	2 cut(s)	248, 288
NaeI	GCCGGC	1 cut(s)	253
NciI	CCSGG	3 cut(s)	80, 112, 480
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	394, 462
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	128, 158, 188, 218
NlaIV	GGNNCC	2 cut(s)	78, 181
NmuCI	GTSAC	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	241, 257
PpuMI	RGGWCCY	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	370, 438
PspGI	CCWGG	2 cut(s)	370, 438
PspN4I	GGNNCC	2 cut(s)	78, 181
PspPI	GGNCC	3 cut(s)	76, 224, 387
PspPPI	RGGWCCY	1 cut(s)	76
PsrI	GAACNNNNNNTAC	4 cut(s)	142, 172, 174, 204
RsaI	GTAC	6 cut(s)	23, 116, 160, 169, 190, 199
RsaNI	GTAC	6 cut(s)	22, 115, 159, 168, 189, 198
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	304
SatI	GCNGC	2 cut(s)	240, 256
Sau3AI	GATC	2 cut(s)	394, 462
Sau96I	GGNCC	3 cut(s)	76, 224, 387
ScrFI	CCNGG	5 cut(s)	80, 112, 372, 440, 480
SetI	ASST	8 cut(s)	266, 293, 299, 369, 376, 389, 421, 477
SexAI	ACCWGGT	1 cut(s)	370
SinI	GGWCC	2 cut(s)	76, 387
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
SsiI	CCGC	5 cut(s)	64, 108, 255, 280, 321
StyD4I	CCNGG	5 cut(s)	78, 110, 370, 438, 478
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	92, 404, 425
TauI	GCSGC	1 cut(s)	258
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	192, 256
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	76, 387
XcmI	CCANNNNNNNNNTGG	2 cut(s)	95, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.