Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

12137096 .. 12138480

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGCATTACCAGAGCGAGTACGGTAGAGACAAGACCACCGACGAGATCTGCCGGAGTGAGGACCCGGTTAACCATGGTTTAACTGAAGCAACCGGCATTCATGACACTAAAACAGGCTACGGAACTCATGGCACGGCCACTGGGCCCACTGGCTTCGCTGCAACAACGGCCGGTGGTCACGGGTTCCCGAATCACCGGTCTGACATCTCAAGCTCTTCTGAGGATGATGGGTACGGAGGGAGAAGGGAGAGGAAGGGTTTGAAGGAGAAGATGCCAGGTGGCACACGCCGGTCCGACGACCCCTACGATACGACTCCGATTACCACACCTTATGGTGGACAGCACCAGGATAAGGGAGTGATGGACAAACTCAAAGAGAAGCTCCCAGGAGGTCACAAGGACGATCCCCACAGTACAACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGGTGGTCACAAGGATGATCCCTACAGTACTACTGACACCACTACTACACTGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGCTTGAAGGAGAAGATTGAGAAGCTGCCAGGTGGCAACAGTGACCATAGCGGCACTACTAATATGCCACCTTTTGACACCAGAGCCCATGAGAAGAAGGGATTGATGGACAAGATTAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

246

Amino Acids

26.62

Weight (kDa)

6.33

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	25 - 133	2.1e-14	Dehydrin
Dehydrin	PF00257	113 - 173	4.7e-15	Dehydrin
Dehydrin	PF00257	199 - 246	6.7e-11	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	648
AclWI	GGATC	2 cut(s)	401, 521
AcoI	YGGCCR	5 cut(s)	138, 171, 453, 573, 730
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	4 cut(s)	23, 236, 418, 538
AfiI	CCNNNNNNNGG	4 cut(s)	61, 338, 355, 446
AgeI	ACCGGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	265, 604
AjnI	CCWGG	5 cut(s)	277, 348, 388, 508, 625
AluBI	AGCT	5 cut(s)	216, 385, 505, 622, 724
AluI	AGCT	5 cut(s)	216, 385, 505, 622, 724
Alw21I	GWGCWC	2 cut(s)	465, 585
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	401, 521
AoxI	GGCC	6 cut(s)	138, 146, 171, 453, 573, 730
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	161, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsiGI	ACCGGT	1 cut(s)	198
AspS9I	GGNCC	4 cut(s)	64, 146, 147, 294
AsuC2I	CCSGG	3 cut(s)	68, 441, 729
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	64, 294
BaeGI	GKGCMC	1 cut(s)	150
BanII	GRGCYC	2 cut(s)	150, 685
Bbv12I	GWGCWC	2 cut(s)	465, 585
BbvI	GCAGC	2 cut(s)	148, 609
BccI	CCATC	3 cut(s)	224, 358, 697
BceAI	ACGGC	4 cut(s)	153, 186, 463, 583
BciT130I	CCWGG	5 cut(s)	279, 350, 390, 510, 627
BcnI	CCSGG	3 cut(s)	68, 441, 729
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	532
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	3 cut(s)	162, 623, 649
BlsI	GCNGC	3 cut(s)	163, 624, 650
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	8 cut(s)	68, 279, 350, 390, 441, 510, 627, 729
Bme18I	GGWCC	2 cut(s)	64, 294
BmgT120I	GGNCC	4 cut(s)	64, 146, 147, 294
BmiI	GGNNCC	3 cut(s)	66, 148, 188
BmrFI	CCNGG	8 cut(s)	68, 279, 350, 390, 441, 510, 627, 729
BmrI	ACTGGG	2 cut(s)	153, 569
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	2 cut(s)	153, 569
BpuEI	CTTGAG	1 cut(s)	196
BpuMI	CCSGG	3 cut(s)	68, 441, 729
BsaJI	CCNNGG	2 cut(s)	76, 388
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 338, 355, 446
Bse118I	RCCGGY	4 cut(s)	95, 173, 198, 291
Bse1I	ACTGG	3 cut(s)	148, 157, 564
BseBI	CCWGG	5 cut(s)	279, 350, 390, 510, 627
BseDI	CCNNGG	2 cut(s)	76, 388
BseGI	GGATG	2 cut(s)	232, 529
BseLI	CCNNNNNNNGG	4 cut(s)	61, 338, 355, 446
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	3 cut(s)	148, 157, 564
BseSI	GKGCMC	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	148, 609
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	6 cut(s)	140, 148, 173, 455, 575, 732
BshTI	ACCGGT	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	465, 585
BslI	CCNNNNNNNGG	4 cut(s)	61, 338, 355, 446
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	6 cut(s)	140, 148, 173, 455, 575, 732
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	4 cut(s)	150, 465, 585, 685
Bsp143I	GATC	4 cut(s)	48, 406, 492, 526
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	1 cut(s)	648
BspANI	GGCC	6 cut(s)	140, 148, 173, 455, 575, 732
BspCNI	CTCAG	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	66, 148, 188
BspPI	GGATC	2 cut(s)	401, 521
BspQI	GCTCTTC	1 cut(s)	223
BsrFI	RCCGGY	4 cut(s)	95, 173, 198, 291
BsrI	ACTGG	3 cut(s)	148, 157, 564
BssAI	RCCGGY	4 cut(s)	95, 173, 198, 291
BssECI	CCNNGG	2 cut(s)	76, 388
BssMI	GATC	4 cut(s)	48, 406, 492, 526
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	5 cut(s)	279, 350, 390, 510, 627
Bst4CI	ACNGT	4 cut(s)	26, 416, 536, 638
Bst6I	CTCTTC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	232, 529
BstKTI	GATC	4 cut(s)	51, 409, 495, 529
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	4 cut(s)	48, 406, 492, 526
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	5 cut(s)	279, 350, 390, 510, 627
BstSCI	CCNGG	8 cut(s)	66, 277, 348, 388, 439, 508, 625, 727
BstSFI	CTRYAG	1 cut(s)	532
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	148, 609
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	6 cut(s)	140, 148, 173, 455, 575, 732
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	232, 529
BtsIMutI	CAGTG	4 cut(s)	141, 150, 557, 643
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	4 cut(s)	95, 173, 198, 291
Cfr13I	GGNCC	4 cut(s)	64, 146, 147, 294
CpoI	CGGWCCG	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	4 cut(s)	22, 235, 417, 537
CspAI	ACCGGT	1 cut(s)	198
CspI	CGGWCCG	1 cut(s)	294
CviAII	CATG	6 cut(s)	77, 104, 131, 467, 587, 686
CviQI	GTAC	4 cut(s)	22, 235, 417, 537
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	50, 408, 494, 528
DpnII	GATC	4 cut(s)	48, 406, 492, 526
EaeI	YGGCCR	5 cut(s)	138, 171, 453, 573, 730
EagI	CGGCCG	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	150, 685
Eco47I	GGWCC	2 cut(s)	64, 294
Eco52I	CGGCCG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	5 cut(s)	277, 348, 388, 508, 625
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	150, 685
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	6 cut(s)	80, 107, 134, 470, 590, 689
FalI	AAGNNNNNCTT	2 cut(s)	708, 740
FatI	CATG	6 cut(s)	76, 103, 130, 466, 586, 685
Fnu4HI	GCNGC	3 cut(s)	162, 623, 649
FokI	GGATG	2 cut(s)	239, 536
FriOI	GRGCYC	2 cut(s)	150, 685
Fsp4HI	GCNGC	3 cut(s)	162, 623, 649
GluI	GCNGC	3 cut(s)	162, 623, 649
HaeIII	GGCC	6 cut(s)	140, 148, 173, 455, 575, 732
Hin1II	CATG	6 cut(s)	80, 107, 134, 470, 590, 689
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	2 cut(s)	193, 316
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	73, 341, 487
Hpy188I	TCNGA	4 cut(s)	205, 223, 298, 321
Hpy188III	TCNNGA	2 cut(s)	104, 190
Hpy8I	GTNNAC	3 cut(s)	73, 341, 487
Hpy99I	CGWCG	2 cut(s)	47, 302
HpyAV	CCTTC	5 cut(s)	240, 250, 259, 598, 688
HpyCH4III	ACNGT	4 cut(s)	26, 416, 536, 638
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	6 cut(s)	80, 107, 134, 470, 590, 689
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	48, 406, 492, 526
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	4, 390
Lsp1109I	GCAGC	2 cut(s)	148, 609
LweI	GCATC	1 cut(s)	264
MabI	ACCWGGT	1 cut(s)	508
MaeIII	GTNAC	6 cut(s)	179, 395, 443, 515, 563, 638
MalI	GATC	4 cut(s)	50, 408, 494, 528
MboI	GATC	4 cut(s)	48, 406, 492, 526
MboII	GAAGA	4 cut(s)	210, 283, 622, 703
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	4 cut(s)	150, 465, 585, 685
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	55, 217, 233, 246, 386
MseI	TTAA	3 cut(s)	72, 83, 714
MslI	CAYNNNNRTG	1 cut(s)	522
MspR9I	CCNGG	8 cut(s)	68, 279, 350, 390, 441, 510, 627, 729
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	5 cut(s)	279, 350, 390, 510, 627
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	3 cut(s)	68, 441, 729
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	4 cut(s)	48, 406, 492, 526
NlaIII	CATG	6 cut(s)	80, 107, 134, 470, 590, 689
NlaIV	GGNNCC	3 cut(s)	66, 148, 188
NmuCI	GTSAC	4 cut(s)	179, 395, 515, 638
PagI	TCATGA	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	163, 624, 650
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	5 cut(s)	277, 348, 388, 508, 625
PspGI	CCWGG	5 cut(s)	277, 348, 388, 508, 625
PspN4I	GGNNCC	3 cut(s)	66, 148, 188
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	64, 146, 147, 294
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	4 cut(s)	23, 236, 418, 538
RsaNI	GTAC	4 cut(s)	22, 235, 417, 537
RseI	CAYNNNNRTG	1 cut(s)	522
Rsr2I	CGGWCCG	1 cut(s)	294
RsrII	CGGWCCG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	72, 83, 714
SatI	GCNGC	3 cut(s)	162, 623, 649
Sau3AI	GATC	4 cut(s)	48, 406, 492, 526
Sau96I	GGNCC	4 cut(s)	64, 146, 147, 294
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	8 cut(s)	68, 279, 350, 390, 441, 510, 627, 729
SduI	GDGCHC	4 cut(s)	150, 465, 585, 685
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	532
SinI	GGWCC	2 cut(s)	64, 294
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SsiI	CCGC	1 cut(s)	648
StyD4I	CCNGG	8 cut(s)	66, 277, 348, 388, 439, 508, 625, 727
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	26, 416, 536, 638
TatI	WGTACW	2 cut(s)	416, 536
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	72, 83, 714
Tru9I	TTAA	3 cut(s)	72, 83, 714
TscAI	CASTG	4 cut(s)	148, 157, 564, 643
TseFI	GTSAC	4 cut(s)	179, 395, 515, 638
TseI	GCWGC	2 cut(s)	161, 622
Tsp45I	GTSAC	4 cut(s)	179, 395, 515, 638
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	2 cut(s)	138, 252
TspRI	CASTG	4 cut(s)	148, 157, 564, 643
VpaK11BI	GGWCC	2 cut(s)	64, 294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.