Rw2G010850

Belongs to the plant dehydrin family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
10981218 .. 10982695
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G010850.1

Sequence Viewer

Length: 1383 bp
ATGGCGCATTACCAGAGTGAATACCCCACAGAGTCTCCCACAGACGAGTACGGCAACCCCGTTACCCGCACTGACGAGTATGGCAACCCGATTCACCACGGCGTGACCGGAGCAACCACCGGGCACGGCATTCATGACACCACTCACGTCACCGGAACCGGCTACGGAACTCACGGCACCGGTACTGCACCCACTGGTTTCGTTGGGGCAGCTCCTGGTGGTCACGGCGTCACTACTCTTCCGCGTTCCGGCAGCTCCAGCTCCAGCTCCTCTGAGGATGATGGTTATGGTGGAAGGAGGAAGAAGGGTTTGAAGGAGAAGATCAAGGAGAAGCTGCCAGGTGGCACACGCCGGTCCGATGACCCCTACGGTACAACCCCGACTACCACACCTTCTGGTGGACAGTACCAGGATAGGGGAGTGATGGACAAAATCAAGGAGAAGATTCCAGGTGGTCACAAGGACGATCCCTACAGTACTACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGATGGACCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACGGTACTACACATAGCACTACTACACCGGGTTATGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGATGGACCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACGGTACTACACATAGCACTACTACACCGGGTTATGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACTCATAGCACTACTACCCCGGGTTACGGTGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACACATAGCACTACTACACCGGCTTACGGCGATGATTCCTACACTACTAATCAGAGCACTACTACACCGGGTTACGGCATGGGTTATGGCAGGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGGATGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTCCGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTTGACAAGATCAAAGAGAAGCTACCAGGTGGTCGCAAGGATGATCCCTACGGTACTACTCACACCACCACGACTGCTGCACCGGCTTACGGTACTGCAACAGGGGAGCACCATGAGAAGAAGGGAATGATGGACAAGATCAAGGAGAAGCTTCCCGGTGGACACAGCACCACTCGATGA

Protein Analysis

460

Amino Acids

48.9

Weight (kDa)

7.21

Isoelectric Point (pI)

18.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 14 - 153 1.1e-29 Dehydrin
Dehydrin PF00257 133 - 193 3.7e-12 Dehydrin
Dehydrin PF00257 176 - 233 4.2e-11 Dehydrin
Dehydrin PF00257 212 - 273 1.1e-11 Dehydrin
Dehydrin PF00257 250 - 313 9.9e-13 Dehydrin
Dehydrin PF00257 290 - 373 2.3e-11 Dehydrin
Dehydrin PF00257 351 - 412 5.7e-12 Dehydrin
Dehydrin PF00257 389 - 456 3.8e-17 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000632)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 1 cut(s) 244
AciI CCGC 7 cut(s) 67, 242, 573, 693, 813, 933, 1113
AclWI GGATC 7 cut(s) 461, 581, 701, 821, 941, 1121, 1241
AcoI YGGCCR 5 cut(s) 513, 633, 753, 873, 1173
AcyI GRCGYC 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 103
AgeI ACCGGT 1 cut(s) 179
AgsI TTSAA 1 cut(s) 313
AjiI CACGTC 1 cut(s) 148
Alw21I GWGCWC 8 cut(s) 525, 645, 765, 885, 1019, 1065, 1185, 1314
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 7 cut(s) 461, 581, 701, 821, 941, 1121, 1241
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 859
AoxI GGCC 6 cut(s) 513, 633, 753, 873, 1053, 1173
ApeKI GCWGC 4 cut(s) 209, 252, 334, 1280
AsiGI ACCGGT 1 cut(s) 179
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 7 cut(s) 354, 547, 667, 787, 907, 1053, 1087
AsuC2I CCSGG 9 cut(s) 121, 501, 621, 741, 860, 861, 1029, 1161, 1359
AsuHPI GGTGA 2 cut(s) 86, 142
AvaI CYCGRG 1 cut(s) 859
AvaII GGWCC 6 cut(s) 354, 547, 667, 787, 907, 1087
BaeGI GKGCMC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 176
Bbv12I GWGCWC 8 cut(s) 525, 645, 765, 885, 1019, 1065, 1185, 1314
BbvI GCAGC 4 cut(s) 221, 264, 321, 1267
BccI CCATC 5 cut(s) 275, 418, 538, 658, 1327
BceAI ACGGC 8 cut(s) 67, 115, 142, 190, 241, 523, 1003, 1051
BcnI CCSGG 9 cut(s) 121, 501, 621, 741, 860, 861, 1029, 1161, 1359
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 4 cut(s) 472, 832, 952, 1132
BisI GCNGC 4 cut(s) 210, 253, 335, 1281
BlsI GCNGC 4 cut(s) 211, 254, 336, 1282
BmcAI AGTACT 4 cut(s) 478, 838, 958, 1138
Bme18I GGWCC 6 cut(s) 354, 547, 667, 787, 907, 1087
BmeT110I CYCGRG 1 cut(s) 859
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 7 cut(s) 354, 547, 667, 787, 907, 1053, 1087
BmiI GGNNCC 3 cut(s) 157, 178, 1165
BpmI CTGGAG 2 cut(s) 241, 247
BpuMI CCSGG 9 cut(s) 121, 501, 621, 741, 860, 861, 1029, 1161, 1359
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 97, 858, 859
BsaWI WCCGGW 3 cut(s) 107, 152, 179
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bse118I RCCGGY 5 cut(s) 158, 179, 351, 979, 1285
Bse1I ACTGG 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 97, 858, 859
BseGI GGATG 3 cut(s) 283, 1129, 1249
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 4 cut(s) 221, 264, 321, 1267
BsgI GTGCAG 2 cut(s) 171, 1266
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 6 cut(s) 515, 635, 755, 875, 1055, 1175
BshNI GGYRCC 1 cut(s) 176
BshTI ACCGGT 1 cut(s) 179
BsiHKAI GWGCWC 8 cut(s) 525, 645, 765, 885, 1019, 1065, 1185, 1314
BsiHKCI CYCGRG 1 cut(s) 859
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 6 cut(s) 515, 635, 755, 875, 1055, 1175
BsoBI CYCGRG 1 cut(s) 859
Bsp1286I GDGCHC 9 cut(s) 126, 525, 645, 765, 885, 1019, 1065, 1185, 1314
BspACI CCGC 7 cut(s) 67, 242, 573, 693, 813, 933, 1113
BspANI GGCC 6 cut(s) 515, 635, 755, 875, 1055, 1175
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 3 cut(s) 157, 178, 1165
BspPI GGATC 7 cut(s) 461, 581, 701, 821, 941, 1121, 1241
BspT107I GGYRCC 1 cut(s) 176
BsrFI RCCGGY 5 cut(s) 158, 179, 351, 979, 1285
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 5 cut(s) 158, 179, 351, 979, 1285
BssECI CCNNGG 3 cut(s) 97, 858, 859
BssNI GRCGYC 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 283, 1129, 1249
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 258, 1286
BstSFI CTRYAG 4 cut(s) 472, 832, 952, 1132
BstSLI GKGCMC 1 cut(s) 126
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 4 cut(s) 221, 264, 321, 1267
BsuRI GGCC 6 cut(s) 515, 635, 755, 875, 1055, 1175
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 1005
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 283, 1129, 1249
BtsIMutI CAGTG 2 cut(s) 69, 192
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 5 cut(s) 158, 179, 351, 979, 1285
Cfr13I GGNCC 7 cut(s) 354, 547, 667, 787, 907, 1053, 1087
Cfr9I CCCGGG 1 cut(s) 859
CpoI CGGWCCG 1 cut(s) 354
CseI GACGC 1 cut(s) 217
CsiI ACCWGGT 1 cut(s) 1228
CspAI ACCGGT 1 cut(s) 179
CspI CGGWCCG 1 cut(s) 354
CviAII CATG 3 cut(s) 134, 1039, 1316
DdeI CTNAG 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 103
EaeI YGGCCR 5 cut(s) 513, 633, 753, 873, 1173
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco47I GGWCC 6 cut(s) 354, 547, 667, 787, 907, 1087
Eco88I CYCGRG 1 cut(s) 859
FaeI CATG 3 cut(s) 137, 1042, 1319
FatI CATG 3 cut(s) 133, 1038, 1315
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 4 cut(s) 210, 253, 335, 1281
FokI GGATG 3 cut(s) 290, 1136, 1256
Fsp4HI GCNGC 4 cut(s) 210, 253, 335, 1281
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 210, 253, 335, 1281
GsuI CTGGAG 2 cut(s) 241, 247
HaeIII GGCC 6 cut(s) 515, 635, 755, 875, 1055, 1175
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 137, 1042, 1319
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 1207
HindII GTYRAC 1 cut(s) 1207
HindIII AAGCTT 1 cut(s) 1352
HinfI GANTC 4 cut(s) 32, 91, 445, 995
HphI GGTGA 2 cut(s) 86, 142
Hpy166II GTNNAC 6 cut(s) 401, 787, 907, 1087, 1207, 1364
Hpy188I TCNGA 3 cut(s) 274, 358, 1014
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 6 cut(s) 401, 787, 907, 1087, 1207, 1364
HpyAV CCTTC 5 cut(s) 288, 298, 307, 402, 1318
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 188, 1283, 1301
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 1286
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 137, 1042, 1319
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 6 cut(s) 110, 217, 260, 266, 272, 1309
Lsp1109I GCAGC 4 cut(s) 221, 264, 321, 1267
MabI ACCWGGT 1 cut(s) 1228
MaeII ACGT 1 cut(s) 147
MboII GAAGA 5 cut(s) 230, 313, 331, 454, 1333
MhlI GDGCHC 9 cut(s) 126, 525, 645, 765, 885, 1019, 1065, 1185, 1314
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 268, 280, 291
MslI CAYNNNNRTG 5 cut(s) 582, 702, 822, 942, 1122
Mva1269I GAATGC 1 cut(s) 129
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 258, 1286
NciI CCSGG 9 cut(s) 121, 501, 621, 741, 860, 861, 1029, 1161, 1359
NlaIII CATG 3 cut(s) 137, 1042, 1319
NlaIV GGNNCC 3 cut(s) 157, 178, 1165
PagI TCATGA 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 3 cut(s) 91, 445, 995
PinAI ACCGGT 1 cut(s) 179
PkrI GCNGC 4 cut(s) 211, 254, 336, 1282
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PspN4I GGNNCC 3 cut(s) 157, 178, 1165
PspPI GGNCC 7 cut(s) 354, 547, 667, 787, 907, 1053, 1087
PstNI CAGNNNCTG 1 cut(s) 215
RseI CAYNNNNRTG 5 cut(s) 582, 702, 822, 942, 1122
Rsr2I CGGWCCG 1 cut(s) 354
RsrII CGGWCCG 1 cut(s) 354
SatI GCNGC 4 cut(s) 210, 253, 335, 1281
Sau96I GGNCC 7 cut(s) 354, 547, 667, 787, 907, 1053, 1087
ScaI AGTACT 4 cut(s) 478, 838, 958, 1138
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 9 cut(s) 126, 525, 645, 765, 885, 1019, 1065, 1185, 1314
SexAI ACCWGGT 1 cut(s) 1228
SfcI CTRYAG 4 cut(s) 472, 832, 952, 1132
SinI GGWCC 6 cut(s) 354, 547, 667, 787, 907, 1087
SmaI CCCGGG 1 cut(s) 861
SmiMI CAYNNNNRTG 5 cut(s) 582, 702, 822, 942, 1122
SsiI CCGC 7 cut(s) 67, 242, 573, 693, 813, 933, 1113
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 1378
TatI WGTACW 4 cut(s) 476, 836, 956, 1136
TfiI GAWTC 3 cut(s) 91, 445, 995
TscAI CASTG 2 cut(s) 76, 199
TseI GCWGC 4 cut(s) 209, 252, 334, 1280
TspDTI ATGAA 4 cut(s) 122, 569, 689, 1109
TspGWI ACGGA 1 cut(s) 180
TspMI CCCGGG 1 cut(s) 859
TspRI CASTG 2 cut(s) 76, 199
VpaK11BI GGWCC 6 cut(s) 354, 547, 667, 787, 907, 1087
XmaI CCCGGG 1 cut(s) 859
ZrmI AGTACT 4 cut(s) 478, 838, 958, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.