Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

12177187 .. 12178812

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG141900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCGCATTACCAGAGCGAATACCCCACAGAGTCTCCCACAGACGAGTACGGCAACCCCGTTACCCGCACTGACGAGTATGGCAACCCGATTCACCACGGCGTGACCGGAGCAACCACCGGGCACGGCATTCATGACACCACTCACGTCACCGGAACCGGCTACGGAACTGACGGCACCGGTACTGCACCCACTGGTTTCGTTGGGGCAGATCCTGGTGGTCACGGCGTCACTACTCTTCCGCGTTCCGGCAGCTCCAGCTCCTCTGAGGATGATGGTTATGGTGGAAGGAGGAAGAAGGGTTTGAAGGAGAAGATCAAGGAGAAGCTGCCAGGTGGCACACGCCGGTCCGATGACCCCTACGGTACAACCCCGACTACCACACCTTCTGGTGGACAGCACCAGGATAGGGGAGTGATGGACAAAATCAAAGAGAAGATCCCAGGTGGTCACAAGGACGATCCCTACAGTACTACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGTGGTCACAAGAATGATCCCTACAGTACTACACATAGCACTACACCGGGTTATAGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACACATAGCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGGATGATCCCTACAGTACTACTCAGAGCACTACTACACCGGGTTACGGCATGGGTTACGGCAGGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGGATGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTCCGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTTGACAAGATCAAAGAGAAGCTACCAGGTGGTCGCAAGGATGATCCCTACGGTACTACTCACACCACCACGACTGCTGCACCGGCTTACGGTACTGCAACAGGGGAGCACCATGAGAAGAAGGGAATGATGGACAAGATCAAGGAGAAGCTTCCCGGTGGACACAGCACCACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

401

Amino Acids

42.59

Weight (kDa)

6.97

Isoelectric Point (pI)

18.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	14 - 151	1.8e-27	Dehydrin
Dehydrin	PF00257	131 - 191	2.1e-12	Dehydrin
Dehydrin	PF00257	171 - 230	2.5e-12	Dehydrin
Dehydrin	PF00257	213 - 270	8.6e-13	Dehydrin
Dehydrin	PF00257	247 - 314	8.5e-14	Dehydrin
Dehydrin	PF00257	330 - 397	4.8e-18	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	1 cut(s)	244
AciI	CCGC	5 cut(s)	67, 242, 684, 804, 936
AclWI	GGATC	8 cut(s)	206, 433, 455, 575, 692, 812, 944, 1064
AcoI	YGGCCR	4 cut(s)	507, 624, 744, 996
AcyI	GRCGYC	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	103
AfiI	CCNNNNNNNGG	8 cut(s)	248, 392, 409, 500, 737, 857, 989, 1115
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	9 cut(s)	214, 331, 402, 442, 562, 679, 799, 931, 1051
AluBI	AGCT	9 cut(s)	255, 261, 328, 559, 676, 796, 928, 1048, 1177
AluI	AGCT	9 cut(s)	255, 261, 328, 559, 676, 796, 928, 1048, 1177
Alw21I	GWGCWC	7 cut(s)	519, 636, 756, 842, 888, 1008, 1137
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	8 cut(s)	206, 433, 455, 575, 692, 812, 944, 1064
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	507, 624, 744, 876, 996
ApeKI	GCWGC	3 cut(s)	252, 328, 1103
AsiGI	ACCGGT	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	6 cut(s)	348, 541, 658, 778, 876, 910
AsuC2I	CCSGG	7 cut(s)	121, 495, 612, 732, 852, 984, 1182
AsuHPI	GGTGA	2 cut(s)	86, 142
AvaII	GGWCC	5 cut(s)	348, 541, 658, 778, 910
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	176
Bbv12I	GWGCWC	7 cut(s)	519, 636, 756, 842, 888, 1008, 1137
BbvI	GCAGC	3 cut(s)	264, 315, 1090
BccI	CCATC	3 cut(s)	269, 412, 1150
BceAI	ACGGC	9 cut(s)	67, 115, 142, 190, 241, 517, 754, 874, 886
BciT130I	CCWGG	9 cut(s)	216, 333, 404, 444, 564, 681, 801, 933, 1053
BcnI	CCSGG	7 cut(s)	121, 495, 612, 732, 852, 984, 1182
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	5 cut(s)	466, 586, 703, 823, 955
BisI	GCNGC	3 cut(s)	253, 329, 1104
BlsI	GCNGC	3 cut(s)	254, 330, 1105
BmcAI	AGTACT	5 cut(s)	472, 592, 709, 829, 961
Bme18I	GGWCC	5 cut(s)	348, 541, 658, 778, 910
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	6 cut(s)	348, 541, 658, 778, 876, 910
BmiI	GGNNCC	3 cut(s)	157, 178, 988
BpmI	CTGGAG	1 cut(s)	241
BpuMI	CCSGG	7 cut(s)	121, 495, 612, 732, 852, 984, 1182
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	97, 442
BsaWI	WCCGGW	3 cut(s)	107, 152, 179
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	8 cut(s)	248, 392, 409, 500, 737, 857, 989, 1115
Bse118I	RCCGGY	4 cut(s)	158, 179, 345, 1108
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	9 cut(s)	216, 333, 404, 444, 564, 681, 801, 933, 1053
BseDI	CCNNGG	2 cut(s)	97, 442
BseGI	GGATG	4 cut(s)	277, 820, 952, 1072
BseLI	CCNNNNNNNGG	8 cut(s)	248, 392, 409, 500, 737, 857, 989, 1115
BseMII	CTCAG	2 cut(s)	258, 848
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	264, 315, 1090
BsgI	GTGCAG	2 cut(s)	171, 1089
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	5 cut(s)	509, 626, 746, 878, 998
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	179
BsiHKAI	GWGCWC	7 cut(s)	519, 636, 756, 842, 888, 1008, 1137
BslI	CCNNNNNNNGG	8 cut(s)	248, 392, 409, 500, 737, 857, 989, 1115
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	5 cut(s)	509, 626, 746, 878, 998
Bsp1286I	GDGCHC	8 cut(s)	126, 519, 636, 756, 842, 888, 1008, 1137
BspACI	CCGC	5 cut(s)	67, 242, 684, 804, 936
BspANI	GGCC	5 cut(s)	509, 626, 746, 878, 998
BspCNI	CTCAG	2 cut(s)	259, 847
BspFNI	CGCG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	157, 178, 988
BspPI	GGATC	8 cut(s)	206, 433, 455, 575, 692, 812, 944, 1064
BspT107I	GGYRCC	1 cut(s)	176
BsrFI	RCCGGY	4 cut(s)	158, 179, 345, 1108
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	4 cut(s)	158, 179, 345, 1108
BssECI	CCNNGG	2 cut(s)	97, 442
BssNI	GRCGYC	1 cut(s)	228
Bst2UI	CCWGG	9 cut(s)	216, 333, 404, 444, 564, 681, 801, 933, 1053
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	267, 834
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	4 cut(s)	277, 820, 952, 1072
BstFNI	CGCG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 1109
BstNI	CCWGG	9 cut(s)	216, 333, 404, 444, 564, 681, 801, 933, 1053
BstSFI	CTRYAG	5 cut(s)	466, 586, 703, 823, 955
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	264, 315, 1090
BstX2I	RGATCY	2 cut(s)	211, 438
BstYI	RGATCY	2 cut(s)	211, 438
BsuRI	GGCC	5 cut(s)	509, 626, 746, 878, 998
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	4 cut(s)	277, 820, 952, 1072
BtsIMutI	CAGTG	2 cut(s)	69, 192
CaiI	CAGNNNCTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	4 cut(s)	158, 179, 345, 1108
Cfr13I	GGNCC	6 cut(s)	348, 541, 658, 778, 876, 910
CpoI	CGGWCCG	1 cut(s)	348
CseI	GACGC	1 cut(s)	217
CsiI	ACCWGGT	2 cut(s)	562, 1051
CspAI	ACCGGT	1 cut(s)	179
CspI	CGGWCCG	1 cut(s)	348
CviAII	CATG	3 cut(s)	134, 862, 1139
DdeI	CTNAG	2 cut(s)	267, 834
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	4 cut(s)	507, 624, 744, 996
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco47I	GGWCC	5 cut(s)	348, 541, 658, 778, 910
EcoRII	CCWGG	9 cut(s)	214, 331, 402, 442, 562, 679, 799, 931, 1051
FaeI	CATG	3 cut(s)	137, 865, 1142
FatI	CATG	3 cut(s)	133, 861, 1138
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	253, 329, 1104
FokI	GGATG	4 cut(s)	284, 827, 959, 1079
Fsp4HI	GCNGC	3 cut(s)	253, 329, 1104
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	253, 329, 1104
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	5 cut(s)	509, 626, 746, 878, 998
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	137, 865, 1142
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	1175
HinfI	GANTC	2 cut(s)	32, 91
HphI	GGTGA	2 cut(s)	86, 142
Hpy166II	GTNNAC	7 cut(s)	395, 541, 658, 778, 910, 1030, 1187
Hpy188I	TCNGA	3 cut(s)	268, 352, 837
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	7 cut(s)	395, 541, 658, 778, 910, 1030, 1187
HpyAV	CCTTC	5 cut(s)	282, 292, 301, 396, 1141
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	188, 1106, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 1109
HpyF3I	CTNAG	2 cut(s)	267, 834
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	137, 865, 1142
HspAI	GCGC	1 cut(s)	5
LmnI	GCTCC	4 cut(s)	110, 260, 266, 1132
Lsp1109I	GCAGC	3 cut(s)	264, 315, 1090
MabI	ACCWGGT	2 cut(s)	562, 1051
MaeII	ACGT	1 cut(s)	147
MboII	GAAGA	5 cut(s)	230, 307, 325, 448, 1156
MflI	RGATCY	2 cut(s)	211, 438
MhlI	GDGCHC	8 cut(s)	126, 519, 636, 756, 842, 888, 1008, 1137
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	3 cut(s)	262, 274, 285
MslI	CAYNNNNRTG	4 cut(s)	576, 693, 813, 945
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	9 cut(s)	216, 333, 404, 444, 564, 681, 801, 933, 1053
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	258, 1109
NciI	CCSGG	7 cut(s)	121, 495, 612, 732, 852, 984, 1182
NlaIII	CATG	3 cut(s)	137, 865, 1142
NlaIV	GGNNCC	3 cut(s)	157, 178, 988
NmuCI	GTSAC	9 cut(s)	103, 148, 221, 229, 449, 569, 686, 806, 938
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	254, 330, 1105
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	9 cut(s)	214, 331, 402, 442, 562, 679, 799, 931, 1051
PspGI	CCWGG	9 cut(s)	214, 331, 402, 442, 562, 679, 799, 931, 1051
PspN4I	GGNNCC	3 cut(s)	157, 178, 988
PspPI	GGNCC	6 cut(s)	348, 541, 658, 778, 876, 910
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	211, 438
RseI	CAYNNNNRTG	4 cut(s)	576, 693, 813, 945
Rsr2I	CGGWCCG	1 cut(s)	348
RsrII	CGGWCCG	1 cut(s)	348
SatI	GCNGC	3 cut(s)	253, 329, 1104
Sau96I	GGNCC	6 cut(s)	348, 541, 658, 778, 876, 910
ScaI	AGTACT	5 cut(s)	472, 592, 709, 829, 961
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	8 cut(s)	126, 519, 636, 756, 842, 888, 1008, 1137
SexAI	ACCWGGT	2 cut(s)	562, 1051
SfcI	CTRYAG	5 cut(s)	466, 586, 703, 823, 955
SinI	GGWCC	5 cut(s)	348, 541, 658, 778, 910
SmiMI	CAYNNNNRTG	4 cut(s)	576, 693, 813, 945
SsiI	CCGC	5 cut(s)	67, 242, 684, 804, 936
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	1201
TatI	WGTACW	5 cut(s)	470, 590, 707, 827, 959
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	2 cut(s)	76, 199
TseFI	GTSAC	9 cut(s)	103, 148, 221, 229, 449, 569, 686, 806, 938
TseI	GCWGC	3 cut(s)	252, 328, 1103
Tsp45I	GTSAC	9 cut(s)	103, 148, 221, 229, 449, 569, 686, 806, 938
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	76, 199
VpaK11BI	GGWCC	5 cut(s)	348, 541, 658, 778, 910
ZrmI	AGTACT	5 cut(s)	472, 592, 709, 829, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.