MD15G1253900.v1.1

Dehydrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000632
Physical Location & Seq
Forward (+)
21424750 .. 21425322
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1253900.v1.1.491

Sequence Viewer

Length: 573 bp
ATGGCGAATTATCAGTCTCAATATGGTACAAAGCCCCAAGACACAGATGAGTATGGAAACCCGATTCAACAGGGTACTACGGGAGGCTTCGGTAGTGCCACCACTGGTACTGGGTACGGGACCACTGAAACCCCGTACACAGGAGGGCAGCAGCAACAAGAGAGAGGTACTGGCATGACTGGAAGTGGTTACGGGACTACTGATGCCCCGTACACAGGAGGGCAGCAGCAACAAGAGAGAGGGATGATGGATAAGATCAAGGACAAGATTCCAGGAACTGGTGGTGGACGTAGGGATGACGACCCCTACTCATCGAATGCCCAGACCGGTACTGGCATGACTGGAACTGGGTACGGAACTACTGACGCCCCGTACACTGGAGGGGAGTACGAAGAAAGGGGGATGATGGACAAGGTCAAGGACAAGATTCCGGGGACTGGGCAGAGGGATGAAACCTACTCATCTAAGACGGCCTCCACCACCGCACCTTACGGTGGCACCACCGGAGAGCACCAGGAAAAGAAGGGCGCCATGGACAAGATCAAAGAAAAGCTTCCCGGTGGACGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

191

Amino Acids

20.05

Weight (kDa)

5.24

Isoelectric Point (pI)

13.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 81 - 146 1.1e-08 Dehydrin
Dehydrin PF00257 151 - 188 4.3e-07 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 497, 527
AccB7I CCANNNNNTGG 1 cut(s) 278
AciI CCGC 1 cut(s) 483
AcyI GRCGYC 3 cut(s) 366, 528, 565
AfiI CCNNNNNNNGG 6 cut(s) 140, 215, 278, 377, 437, 494
AgeI ACCGGT 1 cut(s) 326
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 2 cut(s) 271, 513
AluBI AGCT 1 cut(s) 553
AluI AGCT 1 cut(s) 553
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 1 cut(s) 21
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 4 cut(s) 148, 151, 223, 226
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 2 cut(s) 432, 558
AvaII GGWCC 1 cut(s) 120
BanI GGYRCC 2 cut(s) 497, 527
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 4 cut(s) 160, 163, 235, 238
BccI CCATC 2 cut(s) 241, 400
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 2 cut(s) 273, 515
BcnI CCSGG 2 cut(s) 432, 558
BcoDI GTCTC 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 531
BisI GCNGC 4 cut(s) 149, 152, 224, 227
BlsI GCNGC 4 cut(s) 150, 153, 225, 228
Bme1390I CCNGG 4 cut(s) 273, 432, 515, 558
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 3 cut(s) 121, 499, 529
BmrFI CCNGG 4 cut(s) 273, 432, 515, 558
BmrI ACTGGG 3 cut(s) 120, 357, 447
BmsI GCATC 1 cut(s) 193
BmuI ACTGGG 3 cut(s) 120, 357, 447
BpmI CTGGAG 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 432, 558
BsaHI GRCGYC 3 cut(s) 366, 528, 565
BsaJI CCNNGG 2 cut(s) 431, 531
BsaWI WCCGGW 2 cut(s) 326, 503
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 215, 278, 377, 437, 494
Bse118I RCCGGY 1 cut(s) 326
BseBI CCWGG 2 cut(s) 273, 515
BseDI CCNNGG 2 cut(s) 431, 531
BseGI GGATG 4 cut(s) 249, 301, 408, 454
BseLI CCNNNNNNNGG 6 cut(s) 140, 215, 278, 377, 437, 494
BseXI GCAGC 4 cut(s) 160, 163, 235, 238
BshFI GGCC 1 cut(s) 473
BshNI GGYRCC 2 cut(s) 497, 527
BshTI ACCGGT 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 4 cut(s) 327, 431, 504, 558
BslFI GGGAC 3 cut(s) 133, 208, 448
BslI CCNNNNNNNGG 6 cut(s) 140, 215, 278, 377, 437, 494
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 3 cut(s) 133, 208, 448
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 2 cut(s) 255, 540
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 1 cut(s) 483
BspANI GGCC 1 cut(s) 473
BspLI GGNNCC 3 cut(s) 121, 499, 529
BspT107I GGYRCC 2 cut(s) 497, 527
BsrFI RCCGGY 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 431, 531
BssMI GATC 2 cut(s) 255, 540
BssNI GRCGYC 3 cut(s) 366, 528, 565
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 273, 515
Bst4CI ACNGT 1 cut(s) 494
BstACI GRCGYC 3 cut(s) 366, 528, 565
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 4 cut(s) 249, 301, 408, 454
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 2 cut(s) 258, 543
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 2 cut(s) 255, 540
BstNI CCWGG 2 cut(s) 273, 515
BstSCI CCNGG 4 cut(s) 271, 430, 513, 556
BstV1I GCAGC 4 cut(s) 160, 163, 235, 238
BsuRI GGCC 1 cut(s) 473
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 4 cut(s) 249, 301, 408, 454
BtsIMutI CAGTG 3 cut(s) 102, 123, 375
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 1 cut(s) 530
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 374
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 3 cut(s) 175, 337, 532
CviJI RGCY 4 cut(s) 34, 87, 473, 553
CviKI_1 RGCY 4 cut(s) 34, 87, 473, 553
DdeI CTNAG 1 cut(s) 465
DinI GGCGCC 1 cut(s) 529
DpnI GATC 2 cut(s) 257, 542
DpnII GATC 2 cut(s) 255, 540
Eco130I CCWWGG 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 271, 513
EcoT14I CCWWGG 1 cut(s) 531
EgeI GGCGCC 1 cut(s) 529
EheI GGCGCC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 178, 340, 535
FaiI YATR 5 cut(s) 24, 54, 176, 338, 533
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FaqI GGGAC 3 cut(s) 133, 208, 448
FatI CATG 3 cut(s) 174, 336, 531
Fnu4HI GCNGC 4 cut(s) 149, 152, 224, 227
FokI GGATG 4 cut(s) 256, 308, 415, 461
Fsp4HI GCNGC 4 cut(s) 149, 152, 224, 227
GlaI GCGC 1 cut(s) 529
GluI GCNGC 4 cut(s) 149, 152, 224, 227
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 1 cut(s) 473
HapII CCGG 4 cut(s) 327, 431, 504, 558
HgaI GACGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 530
Hin1I GRCGYC 3 cut(s) 366, 528, 565
Hin1II CATG 3 cut(s) 178, 340, 535
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 3 cut(s) 64, 268, 427
HpaII CCGG 4 cut(s) 327, 431, 504, 558
Hpy166II GTNNAC 5 cut(s) 138, 213, 287, 375, 563
Hpy8I GTNNAC 5 cut(s) 138, 213, 287, 375, 563
HpyAV CCTTC 1 cut(s) 517
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 3 cut(s) 366, 528, 565
Hsp92II CATG 3 cut(s) 178, 340, 535
HspAI GCGC 1 cut(s) 528
KasI GGCGCC 1 cut(s) 527
Kzo9I GATC 2 cut(s) 255, 540
Lsp1109I GCAGC 4 cut(s) 160, 163, 235, 238
LweI GCATC 1 cut(s) 193
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 257, 542
MboI GATC 2 cut(s) 255, 540
MboII GAAGA 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 1 cut(s) 7
Mly113I GGCGCC 1 cut(s) 528
MnlI CCTC 8 cut(s) 77, 137, 158, 212, 233, 374, 438, 484
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 1 cut(s) 571
MspI CCGG 4 cut(s) 327, 431, 504, 558
MspR9I CCNGG 4 cut(s) 273, 432, 515, 558
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 273, 515
NarI GGCGCC 1 cut(s) 528
NciI CCSGG 2 cut(s) 432, 558
NcoI CCATGG 1 cut(s) 531
NdeII GATC 2 cut(s) 255, 540
NlaIII CATG 3 cut(s) 178, 340, 535
NlaIV GGNNCC 3 cut(s) 121, 499, 529
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 64, 268, 427
PflFI GACNNNGTC 1 cut(s) 413
PflMI CCANNNNNTGG 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 271
PinAI ACCGGT 1 cut(s) 326
PkrI GCNGC 4 cut(s) 150, 153, 225, 228
PluTI GGCGCC 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 271, 513
PspGI CCWGG 2 cut(s) 271, 513
PspN4I GGNNCC 3 cut(s) 121, 499, 529
PspPI GGNCC 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 571
SatI GCNGC 4 cut(s) 149, 152, 224, 227
Sau3AI GATC 2 cut(s) 255, 540
Sau96I GGNCC 1 cut(s) 120
ScrFI CCNGG 4 cut(s) 273, 432, 515, 558
SduI GDGCHC 1 cut(s) 513
SetI ASST 6 cut(s) 169, 292, 417, 458, 490, 555
SfaNI GCATC 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 529
SinI GGWCC 1 cut(s) 120
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 483
SspDI GGCGCC 1 cut(s) 527
StyD4I CCNGG 4 cut(s) 271, 430, 513, 556
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 314
TasI AATT 1 cut(s) 7
TfiI GAWTC 3 cut(s) 64, 268, 427
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TscAI CASTG 3 cut(s) 109, 130, 382
TseI GCWGC 4 cut(s) 148, 151, 223, 226
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 3 cut(s) 109, 130, 382
Tth111I GACNNNGTC 1 cut(s) 413
Van91I CCANNNNNTGG 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.