Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000528.1

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

72382 .. 73829

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000528.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atggagcattaccagagcgagtacggtagagacaagaccaccgacgagatccgccggagtgaggacccggttaaccatggtttaactgaagcaaccggcattcatgacactaaaacaggctacggaactcatggcacggccactgggcccactggcttcgctgcaacaacggccggtggtcacgggttcccgaatcaccggtctggcatctcaagctcttctgaggatgatgggtacggagggagaagggagaggaagggtttgaaggagaagatgccaggtggcacacaccggtccgacgacccctacgatacgaccccgattaccacaccttatggtggacagcaccaggataagggagtgatggacaaactcaaagagaagctcccaggaggtcacaaggacgatccccacagtacaactcataccactgctacaccgggttacggcgtggcaggagagcaccatgagaataagggagtggtggacaagatcaaagagaagctaccaggtggtcacaaggacgatccccacagtacaactcataccactactacaccgggttacggcgtggccggagagcaccatgagaataagggagtggtggacaagatcaaagagaagctaccaggtggtcacaaggacgatccccacagtacaactcataccactactacaccgggttacggcgtggccggagagcaccatgagaataagggagtggtggacaagatcaaagagaagctaccaggtggtcacaaggacgatccccacagtacaactcataccactactacaccgggttacggcgtggccggagagcaccatgagaataagggagtggtggacaagatcaaagagaagctaccaggtggtcacaaggacgatccccacagtacaactcataccactactacaccgggttacggcgtggccggagagcaccatgagaataagggagtggtggacaagatcaaagagaagctaccaggtggtcacaaggacgatccccacagtacaactcataccactactacaccgggttacggcgtggccggagagcaccatgagaacaagggagtggtggacaagatcaaagagaagctaccaggtggtcacaaggatgatccctacagtactactgacaccactactacaccgggttacggcgtggccgcagagcaccatgagaataagggcttgaaggagaagattgagaagctgccaggtggcaacagtgaccatagcggcactactaatacgccaccttttgacaccagaacccatgagaagaagggattgatggacaagattaaagagaagcttcccggccaccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

446

Amino Acids

47.85

Weight (kDa)

6.53

Isoelectric Point (pI)

19.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	52, 1176, 1248
AclWI	GGATC	8 cut(s)	43, 401, 521, 641, 761, 881, 1001, 1121
AcoI	YGGCCR	9 cut(s)	138, 171, 573, 693, 813, 933, 1053, 1173, 1330
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	9 cut(s)	23, 236, 418, 538, 658, 778, 898, 1018, 1138
AgeI	ACCGGT	2 cut(s)	198, 291
AgsI	TTSAA	2 cut(s)	265, 1204
Alw21I	GWGCWC	7 cut(s)	465, 585, 705, 825, 945, 1065, 1185
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	8 cut(s)	43, 401, 521, 641, 761, 881, 1001, 1121
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	161, 1222
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsiGI	ACCGGT	2 cut(s)	198, 291
AspS9I	GGNCC	4 cut(s)	64, 146, 147, 294
AsuC2I	CCSGG	9 cut(s)	68, 441, 561, 681, 801, 921, 1041, 1161, 1329
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	64, 294
BaeGI	GKGCMC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	7 cut(s)	465, 585, 705, 825, 945, 1065, 1185
BbvI	GCAGC	2 cut(s)	148, 1209
BccI	CCATC	3 cut(s)	224, 358, 1297
BceAI	ACGGC	9 cut(s)	153, 186, 463, 583, 703, 823, 943, 1063, 1183
BcnI	CCSGG	9 cut(s)	68, 441, 561, 681, 801, 921, 1041, 1161, 1329
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	1132
BisI	GCNGC	4 cut(s)	162, 1176, 1223, 1249
BlsI	GCNGC	4 cut(s)	163, 1177, 1224, 1250
BmcAI	AGTACT	1 cut(s)	1138
Bme18I	GGWCC	2 cut(s)	64, 294
BmgT120I	GGNCC	4 cut(s)	64, 146, 147, 294
BmiI	GGNNCC	3 cut(s)	66, 148, 188
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	216, 264
BmuI	ACTGGG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	196
BpuMI	CCSGG	9 cut(s)	68, 441, 561, 681, 801, 921, 1041, 1161, 1329
BsaJI	CCNNGG	2 cut(s)	76, 388
BsaWI	WCCGGW	2 cut(s)	198, 291
Bse118I	RCCGGY	4 cut(s)	95, 173, 198, 291
Bse1I	ACTGG	2 cut(s)	148, 157
BseDI	CCNNGG	2 cut(s)	76, 388
BseGI	GGATG	2 cut(s)	232, 1129
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	148, 157
BseSI	GKGCMC	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	148, 1209
Bsh1285I	CGRYCG	1 cut(s)	174
BshTI	ACCGGT	2 cut(s)	198, 291
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	7 cut(s)	465, 585, 705, 825, 945, 1065, 1185
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	99
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	8 cut(s)	150, 465, 585, 705, 825, 945, 1065, 1185
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	3 cut(s)	52, 1176, 1248
BspCNI	CTCAG	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	66, 148, 188
BspPI	GGATC	8 cut(s)	43, 401, 521, 641, 761, 881, 1001, 1121
BspQI	GCTCTTC	1 cut(s)	223
BsrFI	RCCGGY	4 cut(s)	95, 173, 198, 291
BsrI	ACTGG	2 cut(s)	148, 157
BssAI	RCCGGY	4 cut(s)	95, 173, 198, 291
BssECI	CCNNGG	2 cut(s)	76, 388
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	9 cut(s)	26, 416, 536, 656, 776, 896, 1016, 1136, 1238
Bst6I	CTCTTC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	232, 1129
BstMAI	GTCTC	1 cut(s)	24
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 213
BstSFI	CTRYAG	1 cut(s)	1132
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	148, 1209
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	232, 1129
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	4 cut(s)	141, 150, 429, 1243
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	4 cut(s)	95, 173, 198, 291
Cfr13I	GGNCC	4 cut(s)	64, 146, 147, 294
CpoI	CGGWCCG	1 cut(s)	294
CsiI	ACCWGGT	6 cut(s)	508, 628, 748, 868, 988, 1108
Csp6I	GTAC	9 cut(s)	22, 235, 417, 537, 657, 777, 897, 1017, 1137
CspAI	ACCGGT	2 cut(s)	198, 291
CspI	CGGWCCG	1 cut(s)	294
CviQI	GTAC	9 cut(s)	22, 235, 417, 537, 657, 777, 897, 1017, 1137
DdeI	CTNAG	1 cut(s)	222
EaeI	YGGCCR	9 cut(s)	138, 171, 573, 693, 813, 933, 1053, 1173, 1330
EagI	CGGCCG	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	64, 294
Eco52I	CGGCCG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	76
FalI	AAGNNNNNCTT	2 cut(s)	1308, 1340
Fnu4HI	GCNGC	4 cut(s)	162, 1176, 1223, 1249
FokI	GGATG	2 cut(s)	239, 1136
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	4 cut(s)	162, 1176, 1223, 1249
GluI	GCNGC	4 cut(s)	162, 1176, 1223, 1249
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	1322
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	8 cut(s)	73, 341, 487, 607, 727, 847, 967, 1087
Hpy188I	TCNGA	2 cut(s)	223, 298
Hpy188III	TCNNGA	2 cut(s)	104, 190
Hpy8I	GTNNAC	8 cut(s)	73, 341, 487, 607, 727, 847, 967, 1087
Hpy99I	CGWCG	2 cut(s)	47, 302
HpyAV	CCTTC	5 cut(s)	240, 250, 259, 1198, 1288
HpyCH4III	ACNGT	9 cut(s)	26, 416, 536, 656, 776, 896, 1016, 1136, 1238
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 213
HpyF3I	CTNAG	1 cut(s)	222
KspAI	GTTAAC	1 cut(s)	73
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	4, 390
Lsp1109I	GCAGC	2 cut(s)	148, 1209
LweI	GCATC	2 cut(s)	216, 264
MabI	ACCWGGT	6 cut(s)	508, 628, 748, 868, 988, 1108
MboII	GAAGA	4 cut(s)	210, 283, 1222, 1303
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	8 cut(s)	150, 465, 585, 705, 825, 945, 1065, 1185
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	55, 217, 233, 246, 386
MseI	TTAA	3 cut(s)	72, 83, 1314
MslI	CAYNNNNRTG	1 cut(s)	1122
Mva1269I	GAATGC	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	170, 213
NciI	CCSGG	9 cut(s)	68, 441, 561, 681, 801, 921, 1041, 1161, 1329
NcoI	CCATGG	1 cut(s)	76
NlaIV	GGNNCC	3 cut(s)	66, 148, 188
NmuCI	GTSAC	9 cut(s)	179, 395, 515, 635, 755, 875, 995, 1115, 1238
PagI	TCATGA	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	193
PinAI	ACCGGT	2 cut(s)	198, 291
PkrI	GCNGC	4 cut(s)	163, 1177, 1224, 1250
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	66, 148, 188
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	64, 146, 147, 294
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	9 cut(s)	23, 236, 418, 538, 658, 778, 898, 1018, 1138
RsaNI	GTAC	9 cut(s)	22, 235, 417, 537, 657, 777, 897, 1017, 1137
RseI	CAYNNNNRTG	1 cut(s)	1122
Rsr2I	CGGWCCG	1 cut(s)	294
RsrII	CGGWCCG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	72, 83, 1314
SatI	GCNGC	4 cut(s)	162, 1176, 1223, 1249
Sau96I	GGNCC	4 cut(s)	64, 146, 147, 294
ScaI	AGTACT	1 cut(s)	1138
SduI	GDGCHC	8 cut(s)	150, 465, 585, 705, 825, 945, 1065, 1185
SexAI	ACCWGGT	6 cut(s)	508, 628, 748, 868, 988, 1108
SfaNI	GCATC	2 cut(s)	216, 264
SfcI	CTRYAG	1 cut(s)	1132
SinI	GGWCC	2 cut(s)	64, 294
SmiMI	CAYNNNNRTG	1 cut(s)	1122
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SsiI	CCGC	3 cut(s)	52, 1176, 1248
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	9 cut(s)	26, 416, 536, 656, 776, 896, 1016, 1136, 1238
TatI	WGTACW	7 cut(s)	416, 536, 656, 776, 896, 1016, 1136
TauI	GCSGC	2 cut(s)	1178, 1251
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	72, 83, 1314
Tru9I	TTAA	3 cut(s)	72, 83, 1314
TscAI	CASTG	4 cut(s)	148, 157, 436, 1243
TseFI	GTSAC	9 cut(s)	179, 395, 515, 635, 755, 875, 995, 1115, 1238
TseI	GCWGC	2 cut(s)	161, 1222
Tsp45I	GTSAC	9 cut(s)	179, 395, 515, 635, 755, 875, 995, 1115, 1238
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	2 cut(s)	138, 252
TspRI	CASTG	4 cut(s)	148, 157, 436, 1243
VpaK11BI	GGWCC	2 cut(s)	64, 294
ZrmI	AGTACT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.