Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

80318129 .. 80319046

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGCATTACCAGAGCGAGTACGGTAGAGACAAGACCACCGACGAGATCCGCCGGAGTGAGGACCCGGTTAACCATGGTTTAACTGAAGCAACCACCGGGTACGGCATTCATGACACTAAAACAGGCTACGGAACTCATGACACGAATGGAACGGGGCACGGGACTCATGGTACAACTGGTACAGGCTACGGAACTCATGGCACGGCCACTGGGCCCACTGGCTTCGCTGCAACAACGGCCGGTGGTCACGGGTTCCGAATCACCGGTCTGACATCTCAAGCTCTTCTGAGGATGATGGGTACGGAGGGAGGAGAGGAGAGGAAGGGTTTGAAGGAGAAGATGCCAGGTGGCACACACCAGTCCGACAACCCCTACGGTACGACCCCGATTACCACACCTTATGGTGGACAGCACCAGGATAAGGGAGTGGTGGACAAACTCAAAGAGAAGCTCCCAGGAGGTCACAAGGACGATCCCCACAGTACAACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGTACTACTGACACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGCTTGAAGGAGAAGATTGAGAAGCTGCCGCCAGGCGGCAACAGTGACCATATCGGCACTAGTAATACGCCACCTTTTGATACCAGAGCCCATGAGAAGAAGGGAATGATGGACAAGATTAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

261

Amino Acids

27.73

Weight (kDa)

6.39

Isoelectric Point (pI)

20.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	136 - 183	3.3e-06	Dehydrin
Dehydrin	PF00257	239 - 261	8.5e-08	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	52, 668, 675
AclWI	GGATC	2 cut(s)	43, 470
AcoI	YGGCCR	5 cut(s)	207, 240, 522, 615, 775
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	8 cut(s)	23, 104, 175, 184, 304, 382, 487, 580
AfiI	CCNNNNNNNGG	6 cut(s)	61, 407, 424, 515, 608, 674
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	334, 646
AhlI	ACTAGT	1 cut(s)	698
AjnI	CCWGG	4 cut(s)	346, 417, 457, 670
AluBI	AGCT	5 cut(s)	284, 454, 572, 664, 769
AluI	AGCT	5 cut(s)	284, 454, 572, 664, 769
Alw21I	GWGCWC	2 cut(s)	534, 627
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	43, 470
AoxI	GGCC	6 cut(s)	207, 215, 240, 522, 615, 775
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	230, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AsiGI	ACCGGT	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	64, 215, 216
AsuC2I	CCSGG	5 cut(s)	68, 100, 510, 603, 774
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	2 cut(s)	162, 219
BanII	GRGCYC	2 cut(s)	219, 730
Bbv12I	GWGCWC	2 cut(s)	534, 627
BbvI	GCAGC	2 cut(s)	217, 651
BccI	CCATC	2 cut(s)	292, 742
BceAI	ACGGC	5 cut(s)	121, 222, 255, 532, 625
BciT130I	CCWGG	4 cut(s)	348, 419, 459, 672
BcnI	CCSGG	5 cut(s)	68, 100, 510, 603, 774
BcoDI	GTCTC	1 cut(s)	24
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	1 cut(s)	699
BisI	GCNGC	4 cut(s)	231, 665, 668, 676
BlsI	GCNGC	4 cut(s)	232, 666, 669, 677
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	9 cut(s)	68, 100, 348, 419, 459, 510, 603, 672, 774
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	64, 215, 216
BmiI	GGNNCC	3 cut(s)	66, 217, 257
BmrFI	CCNGG	9 cut(s)	68, 100, 348, 419, 459, 510, 603, 672, 774
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	5 cut(s)	68, 100, 510, 603, 774
BsaJI	CCNNGG	2 cut(s)	76, 457
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 407, 424, 515, 608, 674
Bse118I	RCCGGY	2 cut(s)	242, 266
Bse1I	ACTGG	5 cut(s)	184, 217, 226, 361, 576
BseBI	CCWGG	4 cut(s)	348, 419, 459, 672
BseDI	CCNNGG	2 cut(s)	76, 457
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	6 cut(s)	61, 407, 424, 515, 608, 674
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	5 cut(s)	184, 217, 226, 361, 576
BseRI	GAGGAG	2 cut(s)	327, 332
BseSI	GKGCMC	2 cut(s)	162, 219
BseX3I	CGGCCG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	217, 651
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	6 cut(s)	209, 217, 242, 524, 617, 777
BshTI	ACCGGT	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	2 cut(s)	534, 627
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	6 cut(s)	61, 407, 424, 515, 608, 674
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	6 cut(s)	209, 217, 242, 524, 617, 777
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	5 cut(s)	162, 219, 534, 627, 730
Bsp143I	GATC	3 cut(s)	48, 475, 559
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	3 cut(s)	52, 668, 675
BspANI	GGCC	6 cut(s)	209, 217, 242, 524, 617, 777
BspCNI	CTCAG	1 cut(s)	282
BspHI	TCATGA	2 cut(s)	112, 139
BspLI	GGNNCC	3 cut(s)	66, 217, 257
BspPI	GGATC	2 cut(s)	43, 470
BspQI	GCTCTTC	1 cut(s)	291
BsrFI	RCCGGY	2 cut(s)	242, 266
BsrI	ACTGG	5 cut(s)	184, 217, 226, 361, 576
BssAI	RCCGGY	2 cut(s)	242, 266
BssECI	CCNNGG	2 cut(s)	76, 457
BssMI	GATC	3 cut(s)	48, 475, 559
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	4 cut(s)	348, 419, 459, 672
Bst4CI	ACNGT	4 cut(s)	26, 380, 485, 683
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	51, 478, 562
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	48, 475, 559
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	4 cut(s)	348, 419, 459, 672
BstSCI	CCNGG	9 cut(s)	66, 98, 346, 417, 457, 508, 601, 670, 772
BstSLI	GKGCMC	2 cut(s)	162, 219
BstV1I	GCAGC	2 cut(s)	217, 651
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	240
BsuRI	GGCC	6 cut(s)	209, 217, 242, 524, 617, 777
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	210, 219, 688
CciI	TCATGA	2 cut(s)	112, 139
Cfr10I	RCCGGY	2 cut(s)	242, 266
Cfr13I	GGNCC	3 cut(s)	64, 215, 216
Csp6I	GTAC	8 cut(s)	22, 103, 174, 183, 303, 381, 486, 579
CspAI	ACCGGT	1 cut(s)	266
CviAII	CATG	8 cut(s)	77, 113, 140, 170, 200, 536, 629, 731
CviQI	GTAC	8 cut(s)	22, 103, 174, 183, 303, 381, 486, 579
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	3 cut(s)	50, 477, 561
DpnII	GATC	3 cut(s)	48, 475, 559
EaeI	YGGCCR	5 cut(s)	207, 240, 522, 615, 775
EagI	CGGCCG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	219, 730
Eco47I	GGWCC	1 cut(s)	64
Eco52I	CGGCCG	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	4 cut(s)	346, 417, 457, 670
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	219, 730
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	8 cut(s)	80, 116, 143, 173, 203, 539, 632, 734
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	8 cut(s)	76, 112, 139, 169, 199, 535, 628, 730
Fnu4HI	GCNGC	4 cut(s)	231, 665, 668, 676
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	2 cut(s)	219, 730
Fsp4HI	GCNGC	4 cut(s)	231, 665, 668, 676
FspBI	CTAG	1 cut(s)	699
GluI	GCNGC	4 cut(s)	231, 665, 668, 676
HaeIII	GGCC	6 cut(s)	209, 217, 242, 524, 617, 777
Hin1II	CATG	8 cut(s)	80, 116, 143, 173, 203, 539, 632, 734
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	2 cut(s)	166, 261
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	4 cut(s)	73, 410, 436, 554
Hpy188I	TCNGA	4 cut(s)	260, 273, 291, 367
Hpy188III	TCNNGA	2 cut(s)	113, 140
Hpy8I	GTNNAC	4 cut(s)	73, 410, 436, 554
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	4 cut(s)	319, 328, 640, 733
HpyCH4III	ACNGT	4 cut(s)	26, 380, 485, 683
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	8 cut(s)	80, 116, 143, 173, 203, 539, 632, 734
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	48, 475, 559
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	4, 459
Lsp1109I	GCAGC	2 cut(s)	217, 651
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	5 cut(s)	248, 464, 512, 605, 683
MalI	GATC	3 cut(s)	50, 477, 561
MboI	GATC	3 cut(s)	48, 475, 559
MboII	GAAGA	4 cut(s)	278, 352, 664, 748
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	5 cut(s)	162, 219, 534, 627, 730
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	55, 285, 301, 305, 310, 315, 455
MseI	TTAA	3 cut(s)	72, 83, 759
MspR9I	CCNGG	9 cut(s)	68, 100, 348, 419, 459, 510, 603, 672, 774
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	4 cut(s)	348, 419, 459, 672
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	5 cut(s)	68, 100, 510, 603, 774
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	48, 475, 559
NlaIII	CATG	8 cut(s)	80, 116, 143, 173, 203, 539, 632, 734
NlaIV	GGNNCC	3 cut(s)	66, 217, 257
NmuCI	GTSAC	3 cut(s)	248, 464, 683
PagI	TCATGA	2 cut(s)	112, 139
PciSI	GCTCTTC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	261
PinAI	ACCGGT	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	232, 666, 669, 677
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	4 cut(s)	346, 417, 457, 670
PspGI	CCWGG	4 cut(s)	346, 417, 457, 670
PspN4I	GGNNCC	3 cut(s)	66, 217, 257
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	64, 215, 216
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	8 cut(s)	23, 104, 175, 184, 304, 382, 487, 580
RsaNI	GTAC	8 cut(s)	22, 103, 174, 183, 303, 381, 486, 579
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	72, 83, 759
SatI	GCNGC	4 cut(s)	231, 665, 668, 676
Sau3AI	GATC	3 cut(s)	48, 475, 559
Sau96I	GGNCC	3 cut(s)	64, 215, 216
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	9 cut(s)	68, 100, 348, 419, 459, 510, 603, 672, 774
SduI	GDGCHC	5 cut(s)	162, 219, 534, 627, 730
SetI	ASST	9 cut(s)	286, 352, 403, 456, 466, 574, 666, 715, 771
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
SpeI	ACTAGT	1 cut(s)	698
SsiI	CCGC	3 cut(s)	52, 668, 675
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	9 cut(s)	66, 98, 346, 417, 457, 508, 601, 670, 772
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	26, 380, 485, 683
TatI	WGTACW	2 cut(s)	485, 578
TauI	GCSGC	2 cut(s)	670, 678
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	3 cut(s)	72, 83, 759
Tru9I	TTAA	3 cut(s)	72, 83, 759
TscAI	CASTG	3 cut(s)	217, 226, 688
TseFI	GTSAC	3 cut(s)	248, 464, 683
TseI	GCWGC	2 cut(s)	230, 664
Tsp45I	GTSAC	3 cut(s)	248, 464, 683
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	3 cut(s)	147, 207, 320
TspRI	CASTG	3 cut(s)	217, 226, 688
VpaK11BI	GGWCC	1 cut(s)	64
XspI	CTAG	1 cut(s)	699
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.