Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

7798114 .. 7814899

Gene Structure 16786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGAATTATGGTTCAACACCCGAAAAAACTACCGAGGAGTACTACGGGAACCCGACTTATAACGGTAGTGCCGGAGCCGGTAGGACCGACGAGTTCGGGAACGCGGTTCAACACAGTCGGACTGATACTGGCTACGGGACTGCTCATGCCAAGACTGGTGATGAAGTGATTGTTGGACGTCATGGCGGCCCTGCCGTACTTCAGCGCTCCGGAAGCTCTAGCTCTTCTGAAGATGATGGGCTAGGTGGAAGAAGGAAGAAGGGACTAAAAGAAAAGATAAGGGAGAAGCTACCAGGTGGTGGTAACAAGGATGACCAGTACTCTGGTGGAACGCAGACCACTACCCCTTACGGTGGTGGGACGACTTACACAGGTGAAGGAGGGCAACGCCAGGAGAAGGGTATGACGGACAAGATCAAGAAGAAGCTGCCAGGTGGGAATAGGGATGACCAGTATTCTCATGACACGTCAACTACTGCTGCACCTTATGGTGGGACAGGGCGCACAGGAGAGCCCCAGGAAAAGAAGGGCATAATGGACAAGATCAAAGACAAGCTTCCTGGTGGCCACGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0097305 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

194

Amino Acids

20.29

Weight (kDa)

8.58

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AatII	GACGTC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccII	CGCG	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	2 cut(s)	107, 189
AcoI	YGGCCR	1 cut(s)	568
AcuI	CTGAAG	2 cut(s)	188, 252
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	3 cut(s)	44, 201, 323
AfeI	AGCGCT	1 cut(s)	209
AfiI	CCNNNNNNNGG	4 cut(s)	302, 356, 400, 494
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	18, 113
AjiI	CACGTC	1 cut(s)	471
AjnI	CCWGG	5 cut(s)	295, 393, 433, 519, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	5 cut(s)	219, 225, 292, 430, 559
AluI	AGCT	5 cut(s)	219, 225, 292, 430, 559
Aor13HI	TCCGGA	1 cut(s)	212
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	2 cut(s)	190, 568
ApeKI	GCWGC	2 cut(s)	430, 482
AspLEI	GCGC	2 cut(s)	210, 507
AspS9I	GGNCC	2 cut(s)	87, 191
AsuHPI	GGTGA	2 cut(s)	173, 389
AvaII	GGWCC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	417, 469
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	5 cut(s)	297, 395, 435, 521, 564
BfaI	CTAG	2 cut(s)	222, 245
BfoI	RGCGCY	1 cut(s)	211
BisI	GCNGC	3 cut(s)	190, 431, 483
BlsI	GCNGC	3 cut(s)	191, 432, 484
BmcAI	AGTACT	2 cut(s)	44, 323
Bme1390I	CCNGG	5 cut(s)	297, 395, 435, 521, 564
Bme18I	GGWCC	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	87, 191
BmiI	GGNNCC	2 cut(s)	53, 79
BmrFI	CCNGG	5 cut(s)	297, 395, 435, 521, 564
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	36, 519
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 356, 400, 494
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	4 cut(s)	136, 163, 319, 454
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	5 cut(s)	297, 395, 435, 521, 564
BseDI	CCNNGG	2 cut(s)	36, 519
BseGI	GGATG	2 cut(s)	319, 454
BseLI	CCNNNNNNNGG	4 cut(s)	302, 356, 400, 494
BseNI	ACTGG	4 cut(s)	136, 163, 319, 454
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	417, 469
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	192, 570
BsiSI	CCGG	3 cut(s)	75, 81, 213
BslFI	GGGAC	4 cut(s)	154, 279, 376, 511
BslI	CCNNNNNNNGG	4 cut(s)	302, 356, 400, 494
BsmFI	GGGAC	4 cut(s)	154, 279, 376, 511
BsnI	GGCC	2 cut(s)	192, 570
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	417, 546
BspACI	CCGC	2 cut(s)	107, 189
BspANI	GGCC	2 cut(s)	192, 570
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	53, 79
BspQI	GCTCTTC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	4 cut(s)	136, 163, 319, 454
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	36, 519
BssMI	GATC	2 cut(s)	417, 546
BssNI	GRCGYC	1 cut(s)	181
Bst2UI	CCWGG	5 cut(s)	297, 395, 435, 521, 564
Bst4CI	ACNGT	3 cut(s)	68, 119, 356
Bst6I	CTCTTC	1 cut(s)	232
BstACI	GRCGYC	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	319, 454
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 507
BstKTI	GATC	2 cut(s)	420, 549
BstMBI	GATC	2 cut(s)	417, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	5 cut(s)	297, 395, 435, 521, 564
BstSCI	CCNGG	5 cut(s)	295, 393, 433, 519, 562
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	417, 469
BstXI	CCANNNNNNTGG	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	192, 570
BtrI	CACGTC	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	319, 454
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	210, 507
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	87, 191
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	43, 200, 322
CviAII	CATG	3 cut(s)	149, 185, 464
CviQI	GTAC	3 cut(s)	43, 200, 322
DpnI	GATC	2 cut(s)	419, 548
DpnII	GATC	2 cut(s)	417, 546
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	87
Eco47III	AGCGCT	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	188, 252
EcoRII	CCWGG	5 cut(s)	295, 393, 433, 519, 562
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	3 cut(s)	152, 188, 467
FaiI	YATR	8 cut(s)	12, 63, 150, 186, 407, 465, 492, 536
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FaqI	GGGAC	4 cut(s)	154, 279, 376, 511
FatI	CATG	3 cut(s)	148, 184, 463
Fnu4HI	GCNGC	3 cut(s)	190, 431, 483
FokI	GGATG	2 cut(s)	326, 461
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	3 cut(s)	190, 431, 483
FspBI	CTAG	2 cut(s)	222, 245
GlaI	GCGC	2 cut(s)	209, 506
GluI	GCNGC	3 cut(s)	190, 431, 483
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	192, 570
HapII	CCGG	3 cut(s)	75, 81, 213
HhaI	GCGC	2 cut(s)	210, 507
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	152, 188, 467
Hin6I	GCGC	2 cut(s)	208, 505
HinP1I	GCGC	2 cut(s)	208, 505
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	557
HpaII	CCGG	3 cut(s)	75, 81, 213
HphI	GGTGA	2 cut(s)	173, 389
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	2 cut(s)	123, 232
Hpy188III	TCNNGA	4 cut(s)	100, 213, 421, 464
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	5 cut(s)	249, 256, 374, 394, 523
HpyCH4III	ACNGT	3 cut(s)	68, 119, 356
HpyCH4IV	ACGT	2 cut(s)	181, 470
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	181, 470
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	152, 188, 467
HspAI	GCGC	2 cut(s)	208, 505
Kpn2I	TCCGGA	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	417, 546
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	77, 215
Lsp1109I	GCAGC	2 cut(s)	417, 469
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	222, 245
MaeII	ACGT	2 cut(s)	181, 470
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	419, 548
MboI	GATC	2 cut(s)	417, 546
MboII	GAAGA	5 cut(s)	219, 245, 264, 271, 436
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	570
MmeI	TCCRAC	2 cut(s)	101, 157
MnlI	CCTC	2 cut(s)	31, 377
Mox20I	TGGCCA	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	570
MspI	CCGG	3 cut(s)	75, 81, 213
MspR9I	CCNGG	5 cut(s)	297, 395, 435, 521, 564
MvaI	CCWGG	5 cut(s)	297, 395, 435, 521, 564
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeII	GATC	2 cut(s)	417, 546
NlaIII	CATG	3 cut(s)	152, 188, 467
NlaIV	GGNNCC	2 cut(s)	53, 79
PagI	TCATGA	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	191, 432, 484
PsiI	TTATAA	1 cut(s)	63
Psp6I	CCWGG	5 cut(s)	295, 393, 433, 519, 562
PspGI	CCWGG	5 cut(s)	295, 393, 433, 519, 562
PspN4I	GGNNCC	2 cut(s)	53, 79
PspPI	GGNCC	2 cut(s)	87, 191
RsaI	GTAC	3 cut(s)	44, 201, 323
RsaNI	GTAC	3 cut(s)	43, 200, 322
SapI	GCTCTTC	1 cut(s)	232
SatI	GCNGC	3 cut(s)	190, 431, 483
Sau3AI	GATC	2 cut(s)	417, 546
Sau96I	GGNCC	2 cut(s)	87, 191
ScaI	AGTACT	2 cut(s)	44, 323
ScrFI	CCNGG	5 cut(s)	297, 395, 435, 521, 564
SduI	GDGCHC	1 cut(s)	519
SexAI	ACCWGGT	1 cut(s)	295
SinI	GGWCC	1 cut(s)	87
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	107, 189
SspMI	CTAG	2 cut(s)	222, 245
StyD4I	CCNGG	5 cut(s)	295, 393, 433, 519, 562
TaaI	ACNGT	3 cut(s)	68, 119, 356
TaiI	ACGT	2 cut(s)	184, 473
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	7
TatI	WGTACW	2 cut(s)	42, 321
TauI	GCSGC	1 cut(s)	192
TseI	GCWGC	2 cut(s)	430, 482
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XspI	CTAG	2 cut(s)	222, 245
ZraI	GACGTC	1 cut(s)	182
ZrmI	AGTACT	2 cut(s)	44, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.