Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000528.1

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

47615 .. 49712

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000528.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggcgcattaccagagtgaataccccacagagtctcccacagacgagtacggcaaccccgttacccgcactgacgagtatggcaacccgattcaccacggcgtgaccggagcaaccaccgggcacggcattcatgacaccactcacgtcaccggaaccggaaccggaaccggctacggaactcacggcaccggtactgcacccactggtttcgttggggcagctcctggtggccacggcgtcactactcttccgcgttccggcagctccagctccagctcctctgaggatgatggttatggtggaaggaggaagaagggtttgaaggagaagatcaaggagaagctgccaggtggcacacgccggtccgatgacccctacggtacaaccccgactaccacaccttctggtggacagtaccaggataggggagtgatggacaaaatcaaggagaagattccaggtggtcacaaggacgatccctacagtactactcataccactactacaccgggttacggcgtggccggagagcaccgtgagaataagggagtgatggaccagatgaaagagaagctaccaggcggtcacaagaatgatccctacggtactacacatagcactactacaccgggttatggcgtggccggagagcaccgtgagaataagggagtgatggaccagatgaaagagaagctaccaggcggtcacaagaatgatccctacggtactacacatagcactactacaccgggttatggcgtggccggagagcaccgtgagaataagggagtgatggaccagatgaaagagaagctaccaggcggtcacaagaatgatccctacggtactacacatagcactactacaccgggttatggcgtggccggagagcaccgtgagaataagggagtgatggaccagatgaaagagaagctaccaggcggtcacaagaatgatccctacggtactacacatagcactactacaccgggttatggcgtggccggagagcaccgtgagaataagggagtgatggaccagatgaaagagaagctaccaggcggtcacaagaatgatccctacggtactacacatagcactactacaccgggttatggcgtggccggagagcaccgagagattattcagagcaccgccgtgcacttgcaccaacataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

394

Amino Acids

41.9

Weight (kDa)

7.01

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	1 cut(s)	256
AciI	CCGC	8 cut(s)	67, 254, 585, 705, 825, 945, 1065, 1158
AclWI	GGATC	6 cut(s)	473, 593, 713, 833, 953, 1073
AcoI	YGGCCR	7 cut(s)	232, 525, 645, 765, 885, 1005, 1125
AcyI	GRCGYC	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	103
AfiI	CCNNNNNNNGG	9 cut(s)	260, 410, 427, 518, 638, 758, 878, 998, 1118
AgeI	ACCGGT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	325
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	9 cut(s)	226, 349, 420, 460, 580, 700, 820, 940, 1060
AleI	CACNNNNGTG	1 cut(s)	1160
Alw21I	GWGCWC	8 cut(s)	537, 657, 777, 897, 1017, 1137, 1157, 1167
Alw26I	GTCTC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	1163
AlwI	GGATC	6 cut(s)	473, 593, 713, 833, 953, 1073
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	7 cut(s)	232, 525, 645, 765, 885, 1005, 1125
ApaLI	GTGCAC	1 cut(s)	1163
ApeKI	GCWGC	3 cut(s)	221, 264, 346
AsiGI	ACCGGT	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	6 cut(s)	366, 559, 679, 799, 919, 1039
AsuC2I	CCSGG	7 cut(s)	121, 513, 633, 753, 873, 993, 1113
AsuHPI	GGTGA	2 cut(s)	86, 142
AvaII	GGWCC	6 cut(s)	366, 559, 679, 799, 919, 1039
BaeGI	GKGCMC	2 cut(s)	126, 1167
BalI	TGGCCA	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	188
Bbv12I	GWGCWC	8 cut(s)	537, 657, 777, 897, 1017, 1137, 1157, 1167
BbvI	GCAGC	3 cut(s)	233, 276, 333
BccI	CCATC	7 cut(s)	287, 430, 550, 670, 790, 910, 1030
BceAI	ACGGC	7 cut(s)	67, 115, 142, 202, 253, 535, 1145
BciT130I	CCWGG	9 cut(s)	228, 351, 422, 462, 582, 702, 822, 942, 1062
BcnI	CCSGG	7 cut(s)	121, 513, 633, 753, 873, 993, 1113
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	3 cut(s)	222, 265, 347
BlsI	GCNGC	3 cut(s)	223, 266, 348
BmcAI	AGTACT	1 cut(s)	490
Bme18I	GGWCC	6 cut(s)	366, 559, 679, 799, 919, 1039
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	6 cut(s)	366, 559, 679, 799, 919, 1039
BmiI	GGNNCC	4 cut(s)	157, 163, 169, 190
BpmI	CTGGAG	2 cut(s)	253, 259
BpuMI	CCSGG	7 cut(s)	121, 513, 633, 753, 873, 993, 1113
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	97, 235
BsaWI	WCCGGW	5 cut(s)	107, 152, 158, 164, 191
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	9 cut(s)	260, 410, 427, 518, 638, 758, 878, 998, 1118
Bse118I	RCCGGY	3 cut(s)	170, 191, 363
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	9 cut(s)	228, 351, 422, 462, 582, 702, 822, 942, 1062
BseDI	CCNNGG	2 cut(s)	97, 235
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	9 cut(s)	260, 410, 427, 518, 638, 758, 878, 998, 1118
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	2 cut(s)	126, 1167
BseXI	GCAGC	3 cut(s)	233, 276, 333
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	7 cut(s)	234, 527, 647, 767, 887, 1007, 1127
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	191
BsiHKAI	GWGCWC	8 cut(s)	537, 657, 777, 897, 1017, 1137, 1157, 1167
BslI	CCNNNNNNNGG	9 cut(s)	260, 410, 427, 518, 638, 758, 878, 998, 1118
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	7 cut(s)	234, 527, 647, 767, 887, 1007, 1127
Bsp1286I	GDGCHC	9 cut(s)	126, 537, 657, 777, 897, 1017, 1137, 1157, 1167
Bsp143I	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
BspACI	CCGC	8 cut(s)	67, 254, 585, 705, 825, 945, 1065, 1158
BspANI	GGCC	7 cut(s)	234, 527, 647, 767, 887, 1007, 1127
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	4 cut(s)	157, 163, 169, 190
BspPI	GGATC	6 cut(s)	473, 593, 713, 833, 953, 1073
BspT107I	GGYRCC	1 cut(s)	188
BsrFI	RCCGGY	3 cut(s)	170, 191, 363
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	3 cut(s)	170, 191, 363
BssECI	CCNNGG	2 cut(s)	97, 235
BssMI	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	9 cut(s)	228, 351, 422, 462, 582, 702, 822, 942, 1062
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	2 cut(s)	97, 235
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	7 cut(s)	336, 481, 601, 721, 841, 961, 1081
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	9 cut(s)	228, 351, 422, 462, 582, 702, 822, 942, 1062
BstSFI	CTRYAG	1 cut(s)	484
BstSLI	GKGCMC	2 cut(s)	126, 1167
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	233, 276, 333
BsuRI	GGCC	7 cut(s)	234, 527, 647, 767, 887, 1007, 1127
BtgI	CCRYGG	2 cut(s)	97, 235
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	69, 204
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	3 cut(s)	170, 191, 363
Cfr13I	GGNCC	6 cut(s)	366, 559, 679, 799, 919, 1039
CpoI	CGGWCCG	1 cut(s)	366
CseI	GACGC	1 cut(s)	229
CspAI	ACCGGT	1 cut(s)	191
CspI	CGGWCCG	1 cut(s)	366
CviAII	CATG	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	7 cut(s)	335, 480, 600, 720, 840, 960, 1080
DpnII	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	7 cut(s)	232, 525, 645, 765, 885, 1005, 1125
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco47I	GGWCC	6 cut(s)	366, 559, 679, 799, 919, 1039
EcoRII	CCWGG	9 cut(s)	226, 349, 420, 460, 580, 700, 820, 940, 1060
FaeI	CATG	1 cut(s)	137
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	222, 265, 347
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	222, 265, 347
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	222, 265, 347
GsuI	CTGGAG	2 cut(s)	253, 259
HaeIII	GGCC	7 cut(s)	234, 527, 647, 767, 887, 1007, 1127
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	32, 91, 457
HphI	GGTGA	2 cut(s)	86, 142
Hpy166II	GTNNAC	2 cut(s)	413, 1165
Hpy188I	TCNGA	3 cut(s)	286, 370, 1152
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	413, 1165
HpyAV	CCTTC	4 cut(s)	300, 310, 319, 414
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	200, 1165, 1171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
LmnI	GCTCC	5 cut(s)	110, 229, 272, 278, 284
Lsp1109I	GCAGC	3 cut(s)	233, 276, 333
MaeII	ACGT	1 cut(s)	147
MalI	GATC	7 cut(s)	335, 480, 600, 720, 840, 960, 1080
MboI	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
MboII	GAAGA	4 cut(s)	242, 325, 343, 466
MhlI	GDGCHC	9 cut(s)	126, 537, 657, 777, 897, 1017, 1137, 1157, 1167
MlsI	TGGCCA	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	3 cut(s)	280, 292, 303
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
MslI	CAYNNNNRTG	6 cut(s)	594, 714, 834, 954, 1074, 1160
Msp20I	TGGCCA	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	9 cut(s)	228, 351, 422, 462, 582, 702, 822, 942, 1062
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	270
NciI	CCSGG	7 cut(s)	121, 513, 633, 753, 873, 993, 1113
NdeII	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	4 cut(s)	157, 163, 169, 190
NmuCI	GTSAC	9 cut(s)	103, 148, 241, 467, 587, 707, 827, 947, 1067
OliI	CACNNNNGTG	1 cut(s)	1160
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	91, 457
PinAI	ACCGGT	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	223, 266, 348
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	9 cut(s)	226, 349, 420, 460, 580, 700, 820, 940, 1060
PspGI	CCWGG	9 cut(s)	226, 349, 420, 460, 580, 700, 820, 940, 1060
PspN4I	GGNNCC	4 cut(s)	157, 163, 169, 190
PspPI	GGNCC	6 cut(s)	366, 559, 679, 799, 919, 1039
PstNI	CAGNNNCTG	1 cut(s)	227
RseI	CAYNNNNRTG	6 cut(s)	594, 714, 834, 954, 1074, 1160
Rsr2I	CGGWCCG	1 cut(s)	366
RsrII	CGGWCCG	1 cut(s)	366
SatI	GCNGC	3 cut(s)	222, 265, 347
Sau3AI	GATC	7 cut(s)	333, 478, 598, 718, 838, 958, 1078
Sau96I	GGNCC	6 cut(s)	366, 559, 679, 799, 919, 1039
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	9 cut(s)	126, 537, 657, 777, 897, 1017, 1137, 1157, 1167
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	6 cut(s)	366, 559, 679, 799, 919, 1039
SmiMI	CAYNNNNRTG	6 cut(s)	594, 714, 834, 954, 1074, 1160
SsiI	CCGC	8 cut(s)	67, 254, 585, 705, 825, 945, 1065, 1158
TaiI	ACGT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	91, 457
TscAI	CASTG	2 cut(s)	76, 211
TseFI	GTSAC	9 cut(s)	103, 148, 241, 467, 587, 707, 827, 947, 1067
TseI	GCWGC	3 cut(s)	221, 264, 346
Tsp45I	GTSAC	9 cut(s)	103, 148, 241, 467, 587, 707, 827, 947, 1067
TspDTI	ATGAA	6 cut(s)	122, 581, 701, 821, 941, 1061
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	76, 211
VneI	GTGCAC	1 cut(s)	1163
VpaK11BI	GGWCC	6 cut(s)	366, 559, 679, 799, 919, 1039
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.