Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8033534.1

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 450

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8033534.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 449 bp

atggcgcattaccagagcgaataccccacagagtctcccacagacgagtacggcaaccccgttacccgcactgacaagtatggcaacccgattcaccacggcgtgaccggagcaaccaccgggcacggcattcctggcaccactcacgtcaccggaaccggctatggaactcacggtacgaccccgactagcacaccttatggtggacagcaccaggataggggagtggtggaccggatcaaagagaagctaccaggcggtcacaagaatgatccctacagtactactcatacctctactacacagggttacggcgtggctggagagcaccgtgagaataagggagtggtggaccggatcaaagagaagctaccaggcggtcgcaagcatgatccctacagtactactcatagcactactacaccgggttacggcgtggccggagagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

149

Amino Acids

15.88

Weight (kDa)

6.86

Isoelectric Point (pI)

9.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	3 cut(s)	67, 258, 378
AclWI	GGATC	4 cut(s)	245, 266, 365, 386
AcoI	YGGCCR	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	4 cut(s)	50, 178, 283, 403
AfiI	CCNNNNNNNGG	3 cut(s)	203, 220, 431
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	4 cut(s)	133, 213, 253, 373
AluBI	AGCT	2 cut(s)	250, 370
AluI	AGCT	2 cut(s)	250, 370
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	4 cut(s)	245, 266, 365, 386
AoxI	GGCC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	232, 352
AsuC2I	CCSGG	2 cut(s)	121, 426
AsuHPI	GGTGA	2 cut(s)	86, 142
AvaII	GGWCC	2 cut(s)	232, 352
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	330
BceAI	ACGGC	4 cut(s)	67, 115, 142, 328
BciT130I	CCWGG	4 cut(s)	135, 215, 255, 375
BcnI	CCSGG	2 cut(s)	121, 426
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	2 cut(s)	277, 397
BmcAI	AGTACT	2 cut(s)	283, 403
Bme1390I	CCNGG	6 cut(s)	121, 135, 215, 255, 375, 426
Bme18I	GGWCC	2 cut(s)	232, 352
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	232, 352
BmiI	GGNNCC	2 cut(s)	139, 157
BmrFI	CCNGG	6 cut(s)	121, 135, 215, 255, 375, 426
BpmI	CTGGAG	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	121, 426
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	4 cut(s)	107, 152, 234, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 220, 431
Bse118I	RCCGGY	1 cut(s)	158
BseBI	CCWGG	4 cut(s)	135, 215, 255, 375
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	3 cut(s)	203, 220, 431
BseSI	GKGCMC	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	8 cut(s)	108, 120, 153, 159, 235, 355, 425, 441
BslI	CCNNNNNNNGG	3 cut(s)	203, 220, 431
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	126, 330
Bsp143I	GATC	4 cut(s)	237, 271, 357, 391
BspACI	CCGC	3 cut(s)	67, 258, 378
BspANI	GGCC	1 cut(s)	440
BspLI	GGNNCC	2 cut(s)	139, 157
BspPI	GGATC	4 cut(s)	245, 266, 365, 386
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	4 cut(s)	237, 271, 357, 391
Bst2UI	CCWGG	4 cut(s)	135, 215, 255, 375
Bst4CI	ACNGT	4 cut(s)	176, 281, 332, 401
BstC8I	GCNNGC	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	240, 274, 360, 394
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	4 cut(s)	237, 271, 357, 391
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	4 cut(s)	135, 215, 255, 375
BstSCI	CCNGG	6 cut(s)	119, 133, 213, 253, 373, 424
BstSFI	CTRYAG	2 cut(s)	277, 397
BstSLI	GKGCMC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	232, 352
Csp6I	GTAC	4 cut(s)	49, 177, 282, 402
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	5 cut(s)	162, 250, 320, 370, 440
CviKI_1	RGCY	5 cut(s)	162, 250, 320, 370, 440
CviQI	GTAC	4 cut(s)	49, 177, 282, 402
DpnI	GATC	4 cut(s)	239, 273, 359, 393
DpnII	GATC	4 cut(s)	237, 271, 357, 391
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	232, 352
EcoRII	CCWGG	4 cut(s)	133, 213, 253, 373
FaeI	CATG	1 cut(s)	392
FaiI	YATR	6 cut(s)	81, 165, 201, 291, 390, 411
FatI	CATG	1 cut(s)	388
FauI	CCCGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	8 cut(s)	108, 120, 153, 159, 235, 355, 425, 441
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	392
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	32, 91
HpaII	CCGG	8 cut(s)	108, 120, 153, 159, 235, 355, 425, 441
HphI	GGTGA	2 cut(s)	86, 142
Hpy166II	GTNNAC	3 cut(s)	206, 232, 352
Hpy8I	GTNNAC	3 cut(s)	206, 232, 352
HpyCH4III	ACNGT	4 cut(s)	176, 281, 332, 401
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	392
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	237, 271, 357, 391
LmnI	GCTCC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	6 cut(s)	61, 103, 148, 260, 308, 428
MalI	GATC	4 cut(s)	239, 273, 359, 393
MboI	GATC	4 cut(s)	237, 271, 357, 391
MhlI	GDGCHC	2 cut(s)	126, 330
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	1 cut(s)	304
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	8 cut(s)	108, 120, 153, 159, 235, 355, 425, 441
MspR9I	CCNGG	6 cut(s)	121, 135, 215, 255, 375, 426
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	4 cut(s)	135, 215, 255, 375
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	121, 426
NdeII	GATC	4 cut(s)	237, 271, 357, 391
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	139, 157
NmuCI	GTSAC	3 cut(s)	103, 148, 260
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	4 cut(s)	133, 213, 253, 373
PspGI	CCWGG	4 cut(s)	133, 213, 253, 373
PspN4I	GGNNCC	2 cut(s)	139, 157
PspPI	GGNCC	2 cut(s)	232, 352
PsrI	GAACNNNNNNTAC	2 cut(s)	160, 192
RsaI	GTAC	4 cut(s)	50, 178, 283, 403
RsaNI	GTAC	4 cut(s)	49, 177, 282, 402
RseI	CAYNNNNRTG	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	237, 271, 357, 391
Sau96I	GGNCC	2 cut(s)	232, 352
ScaI	AGTACT	2 cut(s)	283, 403
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	6 cut(s)	121, 135, 215, 255, 375, 426
SduI	GDGCHC	2 cut(s)	126, 330
SetI	ASST	5 cut(s)	150, 199, 252, 296, 372
SfcI	CTRYAG	2 cut(s)	277, 397
SinI	GGWCC	2 cut(s)	232, 352
SmiMI	CAYNNNNRTG	1 cut(s)	267
SsiI	CCGC	3 cut(s)	67, 258, 378
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	6 cut(s)	119, 133, 213, 253, 373, 424
TaaI	ACNGT	4 cut(s)	176, 281, 332, 401
TaiI	ACGT	1 cut(s)	150
TatI	WGTACW	2 cut(s)	281, 401
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	3 cut(s)	103, 148, 260
Tsp45I	GTSAC	3 cut(s)	103, 148, 260
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	2 cut(s)	232, 352
XspI	CTAG	1 cut(s)	189
ZrmI	AGTACT	2 cut(s)	283, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.