Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

12663457 .. 12664634

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCGCATTACCAGAGCGAGTACGGCAGAGACAAGACCACCGACGAGTTCGGAAACCCGATCCGCCGGACTGATGACCCTGTTCACCATGGTGTAACTGAAGCAGCCACCGGGTACGGCACTCATGACACTAGAACAGGGTACGGAACTCATGACACCACCGGAACGGGGTACGGGACTCATAGCACAACTGGTACAGGCTACGGAACTCATGGCACCGCCACTGGTCCCACTGGCTTCGATGCAACAACGGCCGGCGTTCACAGCGTCCCGCTTCACCGCTCTGACAGCTCAAGCTCTTCTGAGGATGATGGGTACGGCGGGAGGAGGAAGAAGAAGGGCTTGAAGGAGAAGATAAAGGAGAAGCTGCCAGGTGGCACACACAGGTCCGAGGACCGTTACGGTGCGACTACTACACCTTACGGTGGACAGCACCAGGAGAAGGGAATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

162

Amino Acids

17.41

Weight (kDa)

7.25

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	13 - 162	1.1e-32	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	282
AciI	CCGC	5 cut(s)	64, 219, 272, 280, 321
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	2 cut(s)	252, 478
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	6 cut(s)	23, 116, 143, 173, 196, 317
AfiI	CCNNNNNNNGG	3 cut(s)	168, 425, 442
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	370, 435
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	291, 297, 367, 472
AluI	AGCT	4 cut(s)	291, 297, 367, 472
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	252, 478
ApeKI	GCWGC	2 cut(s)	104, 367
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	227, 387, 394
AsuC2I	CCSGG	2 cut(s)	112, 477
AsuHPI	GGTGA	2 cut(s)	77, 269
AvaII	GGWCC	3 cut(s)	227, 387, 394
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	116, 354
BccI	CCATC	2 cut(s)	305, 445
BceAI	ACGGC	4 cut(s)	40, 133, 267, 334
BciT130I	CCWGG	2 cut(s)	372, 437
BcnI	CCSGG	2 cut(s)	112, 477
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	105, 368
BlsI	GCNGC	2 cut(s)	106, 369
Bme1390I	CCNGG	4 cut(s)	112, 372, 437, 477
Bme18I	GGWCC	3 cut(s)	227, 387, 394
BmgT120I	GGNCC	3 cut(s)	227, 387, 394
BmiI	GGNNCC	2 cut(s)	217, 229
BmrFI	CCNGG	4 cut(s)	112, 372, 437, 477
BmsI	GCATC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	2 cut(s)	112, 477
BsaJI	CCNNGG	2 cut(s)	88, 390
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 425, 442
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	196, 229, 238
BseBI	CCWGG	2 cut(s)	372, 437
BseDI	CCNNGG	2 cut(s)	88, 390
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	3 cut(s)	168, 425, 442
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	3 cut(s)	196, 229, 238
BseRI	GAGGAG	1 cut(s)	340
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	116, 354
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	254, 480
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	255
BsiSI	CCGG	5 cut(s)	67, 111, 162, 255, 477
BslFI	GGGAC	3 cut(s)	190, 213, 254
BslI	CCNNNNNNNGG	3 cut(s)	168, 425, 442
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	3 cut(s)	190, 213, 254
BsnI	GGCC	2 cut(s)	254, 480
Bsp143I	GATC	2 cut(s)	60, 459
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	5 cut(s)	64, 219, 272, 280, 321
BspANI	GGCC	2 cut(s)	254, 480
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	2 cut(s)	124, 151
BspLI	GGNNCC	2 cut(s)	217, 229
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	196, 229, 238
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	88, 390
BssMI	GATC	2 cut(s)	60, 459
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	372, 437
Bst4CI	ACNGT	3 cut(s)	398, 404, 425
Bst6I	CTCTTC	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	63, 462
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	60, 459
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 251, 264, 288
BstNI	CCWGG	2 cut(s)	372, 437
BstSCI	CCNGG	4 cut(s)	110, 370, 435, 475
BstV1I	GCAGC	2 cut(s)	116, 354
BstZI	CGGCCG	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	254, 480
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	222, 231
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	2 cut(s)	124, 151
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	3 cut(s)	227, 387, 394
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	6 cut(s)	22, 115, 142, 172, 195, 316
CviAII	CATG	4 cut(s)	89, 125, 152, 212
CviQI	GTAC	6 cut(s)	22, 115, 142, 172, 195, 316
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	62, 461
DpnII	GATC	2 cut(s)	60, 459
EaeI	YGGCCR	2 cut(s)	252, 478
EagI	CGGCCG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	227, 387, 394
Eco52I	CGGCCG	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	370, 435
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	4 cut(s)	92, 128, 155, 215
FaiI	YATR	5 cut(s)	90, 126, 153, 183, 213
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 456, 488
FaqI	GGGAC	3 cut(s)	190, 213, 254
FatI	CATG	4 cut(s)	88, 124, 151, 211
FauI	CCCGC	2 cut(s)	279, 314
Fnu4HI	GCNGC	2 cut(s)	105, 368
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	105, 368
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	105, 368
HaeIII	GGCC	2 cut(s)	254, 480
HapII	CCGG	5 cut(s)	67, 111, 162, 255, 477
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	92, 128, 155, 215
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	5 cut(s)	67, 111, 162, 255, 477
HphI	GGTGA	2 cut(s)	77, 269
Hpy166II	GTNNAC	3 cut(s)	85, 262, 428
Hpy188I	TCNGA	4 cut(s)	53, 286, 304, 391
Hpy188III	TCNNGA	2 cut(s)	125, 152
Hpy8I	GTNNAC	3 cut(s)	85, 262, 428
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	331, 340, 436
HpyCH4III	ACNGT	3 cut(s)	398, 404, 425
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 251, 264, 288
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	92, 128, 155, 215
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	60, 459
LguI	GCTCTTC	1 cut(s)	304
Lsp1109I	GCAGC	2 cut(s)	116, 354
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	94, 398
MalI	GATC	2 cut(s)	62, 461
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	2 cut(s)	60, 459
MboII	GAAGA	4 cut(s)	291, 343, 346, 364
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	298, 318, 321, 385
MroNI	GCCGGC	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	5 cut(s)	67, 111, 162, 255, 477
MspR9I	CCNGG	4 cut(s)	112, 372, 437, 477
MvaI	CCWGG	2 cut(s)	372, 437
MwoI	GCNNNNNNNGC	4 cut(s)	24, 251, 264, 288
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	2 cut(s)	112, 477
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	60, 459
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	4 cut(s)	92, 128, 155, 215
NlaIV	GGNNCC	2 cut(s)	217, 229
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	2 cut(s)	124, 151
PciSI	GCTCTTC	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	106, 369
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	370, 435
PspGI	CCWGG	2 cut(s)	370, 435
PspN4I	GGNNCC	2 cut(s)	217, 229
PspPI	GGNCC	3 cut(s)	227, 387, 394
RsaI	GTAC	6 cut(s)	23, 116, 143, 173, 196, 317
RsaNI	GTAC	6 cut(s)	22, 115, 142, 172, 195, 316
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	304
SatI	GCNGC	2 cut(s)	105, 368
Sau3AI	GATC	2 cut(s)	60, 459
Sau96I	GGNCC	3 cut(s)	227, 387, 394
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	4 cut(s)	112, 372, 437, 477
SetI	ASST	7 cut(s)	293, 299, 369, 376, 389, 421, 474
SfaNI	GCATC	1 cut(s)	232
SinI	GGWCC	3 cut(s)	227, 387, 394
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
SsiI	CCGC	5 cut(s)	64, 219, 272, 280, 321
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	4 cut(s)	110, 370, 435, 475
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	398, 404, 425
TaqI	TCGA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	229, 238
TseI	GCWGC	2 cut(s)	104, 367
TspGWI	ACGGA	2 cut(s)	159, 219
TspRI	CASTG	2 cut(s)	229, 238
VpaK11BI	GGWCC	3 cut(s)	227, 387, 394
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.