Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351081.1

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 468

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

aaagagaagctaccaggcggtcacaagaatgatccctacagtactacacatagcactactacaccggcttacggcgatgattcctacactactaatcagagcactactacaccgggttacggcatgggttatggcagggccggagagcaccgtgagaataagggagtggtggaccagatgaaagagaagctaccaggcggtcacaaggatgatccctacagtactactcatagcactactacaccgggttccggcgtggccggagagaaccgtgagaataagggagtggttgacaagatcaaagagaagctaccaggtggtcgcaaggatgatccctacggtactactcacaccaccacgactgctgcaccggcttacggtactgcaacaggggagcaccatgagaagaagggaatgatggacaagatcaaggagaagcttcccggtggacacagcaccactcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

155

Amino Acids

16.59

Weight (kDa)

8.66

Isoelectric Point (pI)

12.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	18, 198
AclWI	GGATC	3 cut(s)	26, 206, 326
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	4 cut(s)	43, 223, 343, 382
AfiI	CCNNNNNNNGG	4 cut(s)	71, 119, 251, 377
AjnI	CCWGG	3 cut(s)	13, 193, 313
AluBI	AGCT	4 cut(s)	10, 190, 310, 439
AluI	AGCT	4 cut(s)	10, 190, 310, 439
Alw21I	GWGCWC	3 cut(s)	104, 150, 399
AlwI	GGATC	3 cut(s)	26, 206, 326
AoxI	GGCC	2 cut(s)	138, 258
ApeKI	GCWGC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	138, 172
AsuC2I	CCSGG	3 cut(s)	114, 246, 444
AvaII	GGWCC	1 cut(s)	172
Bbv12I	GWGCWC	3 cut(s)	104, 150, 399
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	2 cut(s)	88, 136
BciT130I	CCWGG	3 cut(s)	15, 195, 315
BcnI	CCSGG	3 cut(s)	114, 246, 444
BfmI	CTRYAG	2 cut(s)	37, 217
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmcAI	AGTACT	2 cut(s)	43, 223
Bme1390I	CCNGG	6 cut(s)	15, 114, 195, 246, 315, 444
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	138, 172
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	6 cut(s)	15, 114, 195, 246, 315, 444
BpuMI	CCSGG	3 cut(s)	114, 246, 444
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 119, 251, 377
Bse118I	RCCGGY	2 cut(s)	64, 370
BseBI	CCWGG	3 cut(s)	15, 195, 315
BseGI	GGATG	2 cut(s)	214, 334
BseLI	CCNNNNNNNGG	4 cut(s)	71, 119, 251, 377
BseXI	GCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	140, 260
BsiHKAI	GWGCWC	3 cut(s)	104, 150, 399
BsiSI	CCGG	8 cut(s)	65, 113, 141, 245, 252, 261, 371, 444
BslI	CCNNNNNNNGG	4 cut(s)	71, 119, 251, 377
BsnI	GGCC	2 cut(s)	140, 260
Bsp1286I	GDGCHC	3 cut(s)	104, 150, 399
Bsp143I	GATC	5 cut(s)	31, 211, 297, 331, 426
BspACI	CCGC	2 cut(s)	18, 198
BspANI	GGCC	2 cut(s)	140, 260
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	3 cut(s)	26, 206, 326
BsrFI	RCCGGY	2 cut(s)	64, 370
BssAI	RCCGGY	2 cut(s)	64, 370
BssMI	GATC	5 cut(s)	31, 211, 297, 331, 426
Bst2UI	CCWGG	3 cut(s)	15, 195, 315
Bst4CI	ACNGT	6 cut(s)	41, 152, 221, 272, 341, 380
BstF5I	GGATG	2 cut(s)	214, 334
BstKTI	GATC	5 cut(s)	34, 214, 300, 334, 429
BstMBI	GATC	5 cut(s)	31, 211, 297, 331, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	3 cut(s)	15, 195, 315
BstSCI	CCNGG	6 cut(s)	13, 112, 193, 244, 313, 442
BstSFI	CTRYAG	2 cut(s)	37, 217
BstV1I	GCAGC	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	140, 260
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	214, 334
Cfr10I	RCCGGY	2 cut(s)	64, 370
Cfr13I	GGNCC	2 cut(s)	138, 172
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	42, 222, 342, 381
CviAII	CATG	2 cut(s)	124, 401
CviJI	RGCY	8 cut(s)	10, 68, 140, 190, 260, 310, 374, 439
CviKI_1	RGCY	8 cut(s)	10, 68, 140, 190, 260, 310, 374, 439
CviQI	GTAC	4 cut(s)	42, 222, 342, 381
DpnI	GATC	5 cut(s)	33, 213, 299, 333, 428
DpnII	GATC	5 cut(s)	31, 211, 297, 331, 426
EaeI	YGGCCR	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	13, 193, 313
FaeI	CATG	2 cut(s)	127, 404
FaiI	YATR	5 cut(s)	51, 125, 132, 231, 402
FatI	CATG	2 cut(s)	123, 400
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	2 cut(s)	221, 341
Fsp4HI	GCNGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	140, 260
HapII	CCGG	8 cut(s)	65, 113, 141, 245, 252, 261, 371, 444
Hin1II	CATG	2 cut(s)	127, 404
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	8 cut(s)	65, 113, 141, 245, 252, 261, 371, 444
Hpy166II	GTNNAC	3 cut(s)	172, 292, 449
Hpy188I	TCNGA	1 cut(s)	99
Hpy8I	GTNNAC	3 cut(s)	172, 292, 449
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	6 cut(s)	41, 152, 221, 272, 341, 380
HpyCH4V	TGCA	2 cut(s)	368, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	127, 404
Kzo9I	GATC	5 cut(s)	31, 211, 297, 331, 426
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	1 cut(s)	352
MabI	ACCWGGT	1 cut(s)	313
MaeIII	GTNAC	3 cut(s)	20, 116, 200
MalI	GATC	5 cut(s)	33, 213, 299, 333, 428
MboI	GATC	5 cut(s)	31, 211, 297, 331, 426
MboII	GAAGA	1 cut(s)	418
MhlI	GDGCHC	3 cut(s)	104, 150, 399
MslI	CAYNNNNRTG	2 cut(s)	27, 207
MspI	CCGG	8 cut(s)	65, 113, 141, 245, 252, 261, 371, 444
MspR9I	CCNGG	6 cut(s)	15, 114, 195, 246, 315, 444
MvaI	CCWGG	3 cut(s)	15, 195, 315
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	3 cut(s)	114, 246, 444
NdeII	GATC	5 cut(s)	31, 211, 297, 331, 426
NlaIII	CATG	2 cut(s)	127, 404
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	20, 200
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	367
Psp6I	CCWGG	3 cut(s)	13, 193, 313
PspGI	CCWGG	3 cut(s)	13, 193, 313
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	138, 172
RsaI	GTAC	4 cut(s)	43, 223, 343, 382
RsaNI	GTAC	4 cut(s)	42, 222, 342, 381
RseI	CAYNNNNRTG	2 cut(s)	27, 207
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	5 cut(s)	31, 211, 297, 331, 426
Sau96I	GGNCC	2 cut(s)	138, 172
ScaI	AGTACT	2 cut(s)	43, 223
ScrFI	CCNGG	6 cut(s)	15, 114, 195, 246, 315, 444
SduI	GDGCHC	3 cut(s)	104, 150, 399
SetI	ASST	5 cut(s)	12, 192, 312, 319, 441
SexAI	ACCWGGT	1 cut(s)	313
SfcI	CTRYAG	2 cut(s)	37, 217
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	27, 207
SsiI	CCGC	2 cut(s)	18, 198
StyD4I	CCNGG	6 cut(s)	13, 112, 193, 244, 313, 442
TaaI	ACNGT	6 cut(s)	41, 152, 221, 272, 341, 380
TaqI	TCGA	1 cut(s)	463
TatI	WGTACW	2 cut(s)	41, 221
TfiI	GAWTC	1 cut(s)	80
TseFI	GTSAC	2 cut(s)	20, 200
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	2 cut(s)	20, 200
TspDTI	ATGAA	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	172
ZrmI	AGTACT	2 cut(s)	43, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.