pycom02g11040

Belongs to the plant dehydrin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
7793015 .. 7794394
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11040.1

Sequence Viewer

Length: 567 bp
ATGTCGCATCTGCATAATCAACACGGGGCACAGCCAACCGACGCCTACGGCAACCCGATCCAGAGAACCGACGAGTACGGGAACCCACTTGGCGGTGCTACTACAGGTGCCACCACCGGAGGATACGGTGCTCATGACACAGCCGCTGCGACCACTGGTCACGATTACGGCAGGAAAGAGCACCATGGTGTCACTGGGGTGCTCCACCGCTCTGGCAGCTCAAGCTCTAGCTCTTCGGAGGATGATGGGCTAGGTGGGAGGAGGAAGAAGAAGGGGTTGAAACAGAAGATAAAGGAGAAGCTCCCGGGATCAACCACGACTGATACAACTTACGGCACCGCTGGCACCACCTATCCAGGAGGGCACCAGCAGGAAAAGGGGGTGATGGACAAGATGAAGGACAAGCTGCCGGGTACTGGCCACAAGGATGACCCCCACTACTCAACCACAACACATGCTACTACGACCACAACTCCCTACGGCGGTGCCACCTACACGGAGGAGCACCACGAAAAGAAGGGGATCATGGACAAGATCAAAGAGAAGCTTCCCGGCGGAAACCACTAG

Protein Analysis

189

Amino Acids

19.89

Weight (kDa)

8.61

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 11 - 139 1.1e-28 Dehydrin
Dehydrin PF00257 120 - 186 7.4e-17 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000632)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 107, 335, 344, 363, 485
AccBSI CCGCTC 1 cut(s) 210
AciI CCGC 6 cut(s) 93, 144, 208, 339, 483, 555
AclWI GGATC 3 cut(s) 52, 316, 530
AcoI YGGCCR 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 77, 415
AfiI CCNNNNNNNGG 3 cut(s) 92, 416, 482
AgsI TTSAA 1 cut(s) 280
AhdI GACNNNNNGTC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 355
AleI CACNNNNGTG 2 cut(s) 186, 197
AluBI AGCT 6 cut(s) 219, 225, 231, 301, 406, 547
AluI AGCT 6 cut(s) 219, 225, 231, 301, 406, 547
Alw21I GWGCWC 4 cut(s) 133, 183, 204, 507
AlwI GGATC 3 cut(s) 52, 316, 530
AlwNI CAGNNNCTG 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 3 cut(s) 146, 216, 406
AsuC2I CCSGG 4 cut(s) 305, 306, 411, 552
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 304
BaeGI GKGCMC 2 cut(s) 31, 366
BalI TGGCCA 1 cut(s) 420
BanI GGYRCC 5 cut(s) 107, 335, 344, 363, 485
Bbv12I GWGCWC 4 cut(s) 133, 183, 204, 507
BbvI GCAGC 3 cut(s) 133, 228, 393
BccI CCATC 2 cut(s) 239, 379
BceAI ACGGC 4 cut(s) 64, 184, 349, 496
BciT130I CCWGG 1 cut(s) 357
BciVI GTATCC 1 cut(s) 116
BcnI CCSGG 4 cut(s) 305, 306, 411, 552
BfaI CTAG 3 cut(s) 228, 251, 565
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 116
BisI GCNGC 4 cut(s) 144, 147, 217, 407
BlsI GCNGC 4 cut(s) 145, 148, 218, 408
Bme1390I CCNGG 5 cut(s) 305, 306, 357, 411, 552
BmeRI GACNNNNNGTC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 304
BmiI GGNNCC 6 cut(s) 83, 109, 337, 346, 365, 487
BmrFI CCNGG 5 cut(s) 305, 306, 357, 411, 552
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 205
BpuMI CCSGG 4 cut(s) 305, 306, 411, 552
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 184, 304
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 416, 482
Bse1I ACTGG 3 cut(s) 160, 199, 421
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 184, 304
BseGI GGATG 2 cut(s) 247, 433
BseLI CCNNNNNNNGG 3 cut(s) 92, 416, 482
BseNI ACTGG 3 cut(s) 160, 199, 421
BseRI GAGGAG 2 cut(s) 274, 515
BseSI GKGCMC 2 cut(s) 31, 366
BseXI GCAGC 3 cut(s) 133, 228, 393
BshFI GGCC 1 cut(s) 420
BshNI GGYRCC 5 cut(s) 107, 335, 344, 363, 485
BsiHKAI GWGCWC 4 cut(s) 133, 183, 204, 507
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 4 cut(s) 117, 305, 410, 552
BslI CCNNNNNNNGG 3 cut(s) 92, 416, 482
BsnI GGCC 1 cut(s) 420
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 6 cut(s) 31, 133, 183, 204, 366, 507
Bsp143I GATC 4 cut(s) 57, 308, 522, 534
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 6 cut(s) 93, 144, 208, 339, 483, 555
BspANI GGCC 1 cut(s) 420
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 6 cut(s) 83, 109, 337, 346, 365, 487
BspPI GGATC 3 cut(s) 52, 316, 530
BspQI GCTCTTC 1 cut(s) 238
BspT107I GGYRCC 5 cut(s) 107, 335, 344, 363, 485
BsrBI CCGCTC 1 cut(s) 210
BsrI ACTGG 3 cut(s) 160, 199, 421
BssECI CCNNGG 2 cut(s) 184, 304
BssMI GATC 4 cut(s) 57, 308, 522, 534
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 343
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 247, 433
BstKTI GATC 4 cut(s) 60, 311, 525, 537
BstMBI GATC 4 cut(s) 57, 308, 522, 534
BstMWI GCNNNNNNNGC 3 cut(s) 216, 222, 342
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 5 cut(s) 303, 304, 355, 409, 550
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 2 cut(s) 31, 366
BstV1I GCAGC 3 cut(s) 133, 228, 393
BstXI CCANNNNNNTGG 1 cut(s) 212
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 2 cut(s) 247, 433
BtsIMutI CAGTG 2 cut(s) 153, 192
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 146
CciI TCATGA 1 cut(s) 133
Cfr9I CCCGGG 1 cut(s) 304
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 76, 414
CviAII CATG 4 cut(s) 134, 185, 455, 526
CviQI GTAC 2 cut(s) 76, 414
DpnI GATC 4 cut(s) 59, 310, 524, 536
DpnII GATC 4 cut(s) 57, 308, 522, 534
DriI GACNNNNNGTC 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 4 cut(s) 137, 188, 458, 529
FaiI YATR 5 cut(s) 15, 135, 186, 456, 527
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FatI CATG 4 cut(s) 133, 184, 454, 525
Fnu4HI GCNGC 4 cut(s) 144, 147, 217, 407
FokI GGATG 2 cut(s) 254, 440
Fsp4HI GCNGC 4 cut(s) 144, 147, 217, 407
FspBI CTAG 3 cut(s) 228, 251, 565
GluI GCNGC 4 cut(s) 144, 147, 217, 407
HaeIII GGCC 1 cut(s) 420
HapII CCGG 4 cut(s) 117, 305, 410, 552
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 137, 188, 458, 529
HindIII AAGCTT 1 cut(s) 545
HpaII CCGG 4 cut(s) 117, 305, 410, 552
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 61, 134, 161
Hpy99I CGWCG 2 cut(s) 44, 74
HpyAV CCTTC 3 cut(s) 265, 391, 511
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 222, 342
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 137, 188, 458, 529
Kzo9I GATC 4 cut(s) 57, 308, 522, 534
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 3 cut(s) 207, 306, 502
Lsp1109I GCAGC 3 cut(s) 133, 228, 393
LweI GCATC 1 cut(s) 16
MaeI CTAG 3 cut(s) 228, 251, 565
MaeIII GTNAC 2 cut(s) 158, 190
MalI GATC 4 cut(s) 59, 310, 524, 536
MbiI CCGCTC 1 cut(s) 210
MboI GATC 4 cut(s) 57, 308, 522, 534
MboII GAAGA 4 cut(s) 225, 277, 280, 298
MhlI GDGCHC 6 cut(s) 31, 133, 183, 204, 366, 507
MlsI TGGCCA 1 cut(s) 420
MluNI TGGCCA 1 cut(s) 420
MnlI CCTC 6 cut(s) 113, 232, 252, 255, 353, 493
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MslI CAYNNNNRTG 3 cut(s) 186, 197, 426
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 2 cut(s) 146, 341
MspI CCGG 4 cut(s) 117, 305, 410, 552
MspR9I CCNGG 5 cut(s) 305, 306, 357, 411, 552
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 216, 222, 342
NciI CCSGG 4 cut(s) 305, 306, 411, 552
NcoI CCATGG 1 cut(s) 184
NdeII GATC 4 cut(s) 57, 308, 522, 534
NlaIII CATG 4 cut(s) 137, 188, 458, 529
NlaIV GGNNCC 6 cut(s) 83, 109, 337, 346, 365, 487
NmuCI GTSAC 2 cut(s) 158, 190
NspI RCATGY 1 cut(s) 458
OliI CACNNNNGTG 2 cut(s) 186, 197
PagI TCATGA 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 238
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 4 cut(s) 145, 148, 218, 408
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 6 cut(s) 83, 109, 337, 346, 365, 487
PstNI CAGNNNCTG 1 cut(s) 146
RsaI GTAC 2 cut(s) 77, 415
RsaNI GTAC 2 cut(s) 76, 414
RseI CAYNNNNRTG 3 cut(s) 186, 197, 426
SapI GCTCTTC 1 cut(s) 238
SatI GCNGC 4 cut(s) 144, 147, 217, 407
Sau3AI GATC 4 cut(s) 57, 308, 522, 534
ScrFI CCNGG 5 cut(s) 305, 306, 357, 411, 552
SduI GDGCHC 6 cut(s) 31, 133, 183, 204, 366, 507
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 102
SmaI CCCGGG 1 cut(s) 306
SmiMI CAYNNNNRTG 3 cut(s) 186, 197, 426
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SsiI CCGC 6 cut(s) 93, 144, 208, 339, 483, 555
SspMI CTAG 3 cut(s) 228, 251, 565
StyD4I CCNGG 5 cut(s) 303, 304, 355, 409, 550
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 128
TauI GCSGC 1 cut(s) 146
TscAI CASTG 2 cut(s) 160, 199
TseFI GTSAC 2 cut(s) 158, 190
TseI GCWGC 3 cut(s) 146, 216, 406
Tsp45I GTSAC 2 cut(s) 158, 190
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 1 cut(s) 512
TspMI CCCGGG 1 cut(s) 304
TspRI CASTG 2 cut(s) 160, 199
XceI RCATGY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmaI CCCGGG 1 cut(s) 304
XspI CTAG 3 cut(s) 228, 251, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.