FvH4_1g12560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000632
Physical Location & Seq
Reverse (-)
6895191 .. 6896692
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12560.t1

Sequence Viewer

Length: 609 bp
ATGGCGCACCAGAGCGAGAACGGCAGAGACACGACTGCCGACGAGTCCGGAAACCCGATCCGCCGGACTGAAGACCCGGTTCATCACCAAGGTGTAACTGAAGCAACCACCGGGAATGGCACTCATGACACTATAACAGGGTACGGAACTCATGAAACGACCGGAACGGGGCACAAGACTCATGGTACAACTGGTACAGGGAACGGAACTCATGAAACGACCGAAACGGGGCACAAGACTCATGGTACAACTGGTACAGGGAACGGAACTCATGGCAGGGCGGCCAGGGCCACTGGGCCAACTGGTTTCGCTGCAACAACGGCCGGCGGTCAGGGACTCCTGCATCACCGGTCTGACGGCTCATCAAGCTCTTCTGAGGATGACGGGTACGGCGGGAGGAGGAAGAAGGAGGAGAAGGAAAAAGAAGGGCTTGAAGAGAAGATTAAGGAGAAGCTGCCAGGCGGGAACAGTGACCATAGCGGCACTAATAATACGCCACCGTCTGATACCATCCCCCATGAGAAGAAGGGCATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCATCATGAAATCGACCATTCATCGACTATAGATATATGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.2

Weight (kDa)

6.11

Isoelectric Point (pI)

22.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 13 - 190 2e-24 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 6 cut(s) 61, 281, 327, 393, 462, 480
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 3 cut(s) 282, 321, 562
AcuI CTGAAG 2 cut(s) 90, 120
AfaI GTAC 7 cut(s) 143, 187, 196, 247, 256, 389, 604
AfiI CCNNNNNNNGG 2 cut(s) 168, 228
AgeI ACCGGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 2 cut(s) 284, 457
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 3 cut(s) 369, 454, 556
AluI AGCT 3 cut(s) 369, 454, 556
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 52
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 5 cut(s) 282, 288, 296, 321, 562
ApeKI GCWGC 2 cut(s) 311, 454
AsiGI ACCGGT 1 cut(s) 348
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 288, 296
AsuC2I CCSGG 3 cut(s) 77, 112, 561
AsuHPI GGTGA 2 cut(s) 77, 338
BaeGI GKGCMC 2 cut(s) 174, 234
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 298, 441
BccI CCATC 3 cut(s) 518, 529, 573
BceAI ACGGC 4 cut(s) 37, 336, 373, 406
BciT130I CCWGG 2 cut(s) 286, 459
BcnI CCSGG 3 cut(s) 77, 112, 561
BcoDI GTCTC 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 4 cut(s) 282, 312, 455, 481
BlsI GCNGC 4 cut(s) 283, 313, 456, 482
Bme1390I CCNGG 5 cut(s) 77, 112, 286, 459, 561
BmgT120I GGNCC 2 cut(s) 288, 296
BmrFI CCNGG 5 cut(s) 77, 112, 286, 459, 561
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 78
BpuMI CCSGG 3 cut(s) 77, 112, 561
BsaJI CCNNGG 2 cut(s) 88, 285
BsaWI WCCGGW 3 cut(s) 47, 161, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 228
Bse118I RCCGGY 2 cut(s) 323, 348
Bse1I ACTGG 4 cut(s) 196, 256, 298, 307
BseAI TCCGGA 1 cut(s) 47
BseBI CCWGG 2 cut(s) 286, 459
BseDI CCNNGG 2 cut(s) 88, 285
BseGI GGATG 2 cut(s) 385, 510
BseLI CCNNNNNNNGG 2 cut(s) 168, 228
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 4 cut(s) 196, 256, 298, 307
BseRI GAGGAG 2 cut(s) 412, 425
BseSI GKGCMC 2 cut(s) 174, 234
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 2 cut(s) 298, 441
Bsh1285I CGRYCG 3 cut(s) 162, 222, 324
BshFI GGCC 5 cut(s) 284, 290, 298, 323, 564
BshTI ACCGGT 1 cut(s) 348
BsiEI CGRYCG 3 cut(s) 162, 222, 324
BsiSI CCGG 8 cut(s) 48, 64, 77, 111, 162, 324, 349, 561
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 168, 228
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 5 cut(s) 284, 290, 298, 323, 564
Bsp1286I GDGCHC 2 cut(s) 174, 234
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 2 cut(s) 57, 543
BspACI CCGC 6 cut(s) 61, 281, 327, 393, 462, 480
BspANI GGCC 5 cut(s) 284, 290, 298, 323, 564
BspCNI CTCAG 1 cut(s) 367
BspEI TCCGGA 1 cut(s) 47
BspHI TCATGA 4 cut(s) 124, 151, 211, 568
BspPI GGATC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 376
BsrFI RCCGGY 2 cut(s) 323, 348
BsrI ACTGG 4 cut(s) 196, 256, 298, 307
BssAI RCCGGY 2 cut(s) 323, 348
BssECI CCNNGG 2 cut(s) 88, 285
BssMI GATC 2 cut(s) 57, 543
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 286, 459
Bst4CI ACNGT 2 cut(s) 470, 501
Bst6I CTCTTC 2 cut(s) 376, 429
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 385, 510
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 60, 546
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 2 cut(s) 57, 543
BstMCI CGRYCG 3 cut(s) 162, 222, 324
BstMWI GCNNNNNNNGC 4 cut(s) 21, 287, 320, 366
BstNI CCWGG 2 cut(s) 286, 459
BstSCI CCNGG 5 cut(s) 75, 110, 284, 457, 559
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 2 cut(s) 174, 234
BstV1I GCAGC 2 cut(s) 298, 441
BstV2I GAAGAC 1 cut(s) 78
BstZI CGGCCG 1 cut(s) 321
BsuRI GGCC 5 cut(s) 284, 290, 298, 323, 564
BtsCI GGATG 2 cut(s) 385, 510
BtsIMutI CAGTG 2 cut(s) 291, 475
Cac8I GCNNGC 1 cut(s) 325
CciI TCATGA 4 cut(s) 124, 151, 211, 568
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 323, 348
Cfr13I GGNCC 2 cut(s) 288, 296
Csp6I GTAC 7 cut(s) 142, 186, 195, 246, 255, 388, 603
CspAI ACCGGT 1 cut(s) 348
CviAII CATG 9 cut(s) 125, 152, 182, 212, 242, 272, 518, 532, 569
CviQI GTAC 7 cut(s) 142, 186, 195, 246, 255, 388, 603
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 59, 545
DpnII GATC 2 cut(s) 57, 543
EaeI YGGCCR 3 cut(s) 282, 321, 562
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 376, 429
EarI CTCTTC 2 cut(s) 376, 429
EciI GGCGGA 1 cut(s) 50
EclXI CGGCCG 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 90, 120
EcoRII CCWGG 2 cut(s) 284, 457
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 9 cut(s) 128, 155, 185, 215, 245, 275, 521, 535, 572
FalI AAGNNNNNCTT 4 cut(s) 414, 446, 540, 572
FaqI GGGAC 1 cut(s) 348
FatI CATG 9 cut(s) 124, 151, 181, 211, 241, 271, 517, 531, 568
FauI CCCGC 2 cut(s) 386, 455
Fnu4HI GCNGC 4 cut(s) 282, 312, 455, 481
FokI GGATG 2 cut(s) 392, 497
Fsp4HI GCNGC 4 cut(s) 282, 312, 455, 481
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 282, 312, 455, 481
HaeIII GGCC 5 cut(s) 284, 290, 298, 323, 564
HapII CCGG 8 cut(s) 48, 64, 77, 111, 162, 324, 349, 561
HhaI GCGC 1 cut(s) 7
Hin1II CATG 9 cut(s) 128, 155, 185, 215, 245, 275, 521, 535, 572
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 4 cut(s) 44, 178, 238, 336
HpaII CCGG 8 cut(s) 48, 64, 77, 111, 162, 324, 349, 561
HphI GGTGA 2 cut(s) 77, 338
Hpy188I TCNGA 3 cut(s) 355, 376, 505
Hpy188III TCNNGA 5 cut(s) 48, 125, 152, 212, 569
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 400, 409, 419, 520
HpyCH4III ACNGT 2 cut(s) 470, 501
HpyCH4V TGCA 2 cut(s) 314, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 287, 320, 366
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 9 cut(s) 128, 155, 185, 215, 245, 275, 521, 535, 572
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 47
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 57, 543
LguI GCTCTTC 1 cut(s) 376
Lsp1109I GCAGC 2 cut(s) 298, 441
LweI GCATC 1 cut(s) 352
MaeIII GTNAC 2 cut(s) 94, 470
MalI GATC 2 cut(s) 59, 545
MboI GATC 2 cut(s) 57, 543
MboII GAAGA 6 cut(s) 83, 363, 415, 446, 451, 535
MhlI GDGCHC 2 cut(s) 174, 234
MlyI GAGTC 4 cut(s) 53, 172, 232, 330
MnlI CCTC 4 cut(s) 370, 390, 393, 403
MroI TCCGGA 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 323
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 8 cut(s) 48, 64, 77, 111, 162, 324, 349, 561
MspR9I CCNGG 5 cut(s) 77, 112, 286, 459, 561
MvaI CCWGG 2 cut(s) 286, 459
MwoI GCNNNNNNNGC 4 cut(s) 21, 287, 320, 366
NaeI GCCGGC 1 cut(s) 325
NciI CCSGG 3 cut(s) 77, 112, 561
NdeII GATC 2 cut(s) 57, 543
NgoMIV GCCGGC 1 cut(s) 323
NlaIII CATG 9 cut(s) 128, 155, 185, 215, 245, 275, 521, 535, 572
NmuCI GTSAC 1 cut(s) 470
OliI CACNNNNGTG 1 cut(s) 90
PagI TCATGA 4 cut(s) 124, 151, 211, 568
PciSI GCTCTTC 1 cut(s) 376
PdiI GCCGGC 1 cut(s) 325
PinAI ACCGGT 1 cut(s) 348
PkrI GCNGC 4 cut(s) 283, 313, 456, 482
PleI GAGTC 4 cut(s) 52, 172, 232, 330
PpsI GAGTC 4 cut(s) 52, 172, 232, 330
Psp6I CCWGG 2 cut(s) 284, 457
PspGI CCWGG 2 cut(s) 284, 457
PspPI GGNCC 2 cut(s) 288, 296
RsaI GTAC 7 cut(s) 143, 187, 196, 247, 256, 389, 604
RsaNI GTAC 7 cut(s) 142, 186, 195, 246, 255, 388, 603
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 4 cut(s) 282, 312, 455, 481
Sau3AI GATC 2 cut(s) 57, 543
Sau96I GGNCC 2 cut(s) 288, 296
SchI GAGTC 4 cut(s) 53, 172, 232, 330
ScrFI CCNGG 5 cut(s) 77, 112, 286, 459, 561
SduI GDGCHC 2 cut(s) 174, 234
SetI ASST 5 cut(s) 94, 371, 456, 558, 608
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 90
SsiI CCGC 6 cut(s) 61, 281, 327, 393, 462, 480
StyD4I CCNGG 5 cut(s) 75, 110, 284, 457, 559
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 470, 501
TaqI TCGA 2 cut(s) 576, 587
TaqII GACCGA 1 cut(s) 236
TauI GCSGC 2 cut(s) 284, 483
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 298, 475
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 2 cut(s) 311, 454
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 5 cut(s) 71, 168, 228, 573, 585
TspGWI ACGGA 3 cut(s) 159, 219, 279
TspRI CASTG 2 cut(s) 298, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.