Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

45754579 .. 45760160

Gene Structure 5582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGCATTACCAGAGCGAATACCCCACAGAGTCTCCCACAGACGAGTACGGCAACCCCGTTACCCGCACCGACAAGTATGGCAACCCGATTCACCACGGCGTGACCGGAGCAACCACCGGGCACGGCATTCATGACACCACTCACGTCACCGGAACCGGCTACTCTGAGGATGATGGTTATGGTGGAAGGAGGAAGAAGAAGGGTTTGAAGGAGAAGATCAAGGAGAAAATGCCAGGTGGCACACTCCGGTCCGACGACCCCTACGGTACGACCCCGACTAGCACACCTTATGGTGGACAGCACCAGGATAGGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCGGGCGGTCACAAGAATGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTATGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACTCATAGCACTACTGGCGTGGCCGGAGAGCACCGTAAGAATAAGGGAGTGGTGGGCCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACTCATACCTCTACTACACCGGGTTACGGCGTGGCTGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCGGATCAAAGAGAAGCTACCAGGCGGTCGCAAGGATGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGCATGGTTGACAAGATCAAAGAGAATCTACCATGTGGTCACAAGGATGATCCCTACCGTACTACTCACACTACCACGACTGCTGCACCGCCTTACAGTGCTGCAACAGGGAAGCACCATGCAACAGGGGAGCACCATGAGAAGAAGGGAATGATGGACAAGATCAAGGAGAAGCTTCCCGGTGGACACAGCACCACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

328

Amino Acids

35.56

Weight (kDa)

8.99

Isoelectric Point (pI)

17.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	55 - 119	3.3e-16	Dehydrin
Dehydrin	PF00257	99 - 159	7.2e-11	Dehydrin
Dehydrin	PF00257	172 - 234	8.2e-12	Dehydrin
Dehydrin	PF00257	252 - 324	1.9e-15	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	67, 351, 471, 579, 699, 872
AclWI	GGATC	6 cut(s)	359, 479, 587, 686, 707, 827
AcoI	YGGCCR	3 cut(s)	411, 519, 759
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	7 cut(s)	50, 271, 376, 496, 604, 724, 844
AfiI	CCNNNNNNNGG	5 cut(s)	296, 313, 404, 632, 752
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	5 cut(s)	235, 306, 466, 574, 694
AluBI	AGCT	5 cut(s)	343, 463, 571, 691, 958
AluI	AGCT	5 cut(s)	343, 463, 571, 691, 958
Alw21I	GWGCWC	5 cut(s)	423, 531, 651, 771, 918
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	6 cut(s)	359, 479, 587, 686, 707, 827
AoxI	GGCC	4 cut(s)	411, 519, 553, 759
ApeKI	GCWGC	2 cut(s)	866, 884
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	5 cut(s)	252, 325, 445, 553, 673
AsuC2I	CCSGG	6 cut(s)	121, 348, 399, 627, 747, 963
AsuHPI	GGTGA	2 cut(s)	86, 142
AvaII	GGWCC	4 cut(s)	252, 325, 445, 673
BaeGI	GKGCMC	1 cut(s)	126
Bbv12I	GWGCWC	5 cut(s)	423, 531, 651, 771, 918
BbvI	GCAGC	2 cut(s)	853, 871
BccI	CCATC	2 cut(s)	170, 931
BceAI	ACGGC	5 cut(s)	67, 115, 142, 649, 769
BciT130I	CCWGG	5 cut(s)	237, 308, 468, 576, 696
BcnI	CCSGG	6 cut(s)	121, 348, 399, 627, 747, 963
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	4 cut(s)	370, 490, 598, 718
BisI	GCNGC	2 cut(s)	867, 885
BlsI	GCNGC	2 cut(s)	868, 886
BmcAI	AGTACT	4 cut(s)	376, 496, 604, 724
Bme18I	GGWCC	4 cut(s)	252, 325, 445, 673
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	5 cut(s)	252, 325, 445, 553, 673
BmiI	GGNNCC	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	663
BpuMI	CCSGG	6 cut(s)	121, 348, 399, 627, 747, 963
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	4 cut(s)	107, 152, 249, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	5 cut(s)	296, 313, 404, 632, 752
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	5 cut(s)	237, 308, 468, 576, 696
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	3 cut(s)	178, 715, 835
BseLI	CCNNNNNNNGG	5 cut(s)	296, 313, 404, 632, 752
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	853, 871
BsgI	GTGCAG	1 cut(s)	852
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	4 cut(s)	413, 521, 555, 761
BsiEI	CGRYCG	1 cut(s)	703
BsiHKAI	GWGCWC	5 cut(s)	423, 531, 651, 771, 918
BslI	CCNNNNNNNGG	5 cut(s)	296, 313, 404, 632, 752
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	4 cut(s)	413, 521, 555, 761
Bsp1286I	GDGCHC	6 cut(s)	126, 423, 531, 651, 771, 918
Bsp143I	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
BspACI	CCGC	6 cut(s)	67, 351, 471, 579, 699, 872
BspANI	GGCC	4 cut(s)	413, 521, 555, 761
BspCNI	CTCAG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	6 cut(s)	359, 479, 587, 686, 707, 827
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
Bst2UI	CCWGG	5 cut(s)	237, 308, 468, 576, 696
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	178, 715, 835
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	9 cut(s)	222, 367, 487, 595, 681, 715, 801, 835, 948
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	5 cut(s)	237, 308, 468, 576, 696
BstSFI	CTRYAG	4 cut(s)	370, 490, 598, 718
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	853, 871
BsuRI	GGCC	4 cut(s)	413, 521, 555, 761
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	178, 715, 835
BtsIMutI	CAGTG	1 cut(s)	886
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	5 cut(s)	252, 325, 445, 553, 673
CpoI	CGGWCCG	1 cut(s)	252
Csp6I	GTAC	7 cut(s)	49, 270, 375, 495, 603, 723, 843
CspI	CGGWCCG	1 cut(s)	252
CviAII	CATG	5 cut(s)	134, 787, 816, 902, 920
CviQI	GTAC	7 cut(s)	49, 270, 375, 495, 603, 723, 843
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	9 cut(s)	221, 366, 486, 594, 680, 714, 800, 834, 947
DpnII	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	3 cut(s)	411, 519, 759
Eco47I	GGWCC	4 cut(s)	252, 325, 445, 673
EcoRII	CCWGG	5 cut(s)	235, 306, 466, 574, 694
FaeI	CATG	5 cut(s)	137, 790, 819, 905, 923
FatI	CATG	5 cut(s)	133, 786, 815, 901, 919
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	867, 885
FokI	GGATG	3 cut(s)	185, 722, 842
Fsp4HI	GCNGC	2 cut(s)	867, 885
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	867, 885
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	4 cut(s)	413, 521, 555, 761
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	5 cut(s)	137, 790, 819, 905, 923
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	3 cut(s)	32, 91, 808
HphI	GGTGA	2 cut(s)	86, 142
Hpy166II	GTNNAC	6 cut(s)	299, 325, 445, 673, 793, 968
Hpy188I	TCNGA	2 cut(s)	169, 256
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	6 cut(s)	299, 325, 445, 673, 793, 968
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	4 cut(s)	183, 196, 205, 922
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	869, 887, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	137, 790, 819, 905, 923
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
LmnI	GCTCC	2 cut(s)	110, 913
Lsp1109I	GCAGC	2 cut(s)	853, 871
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	9 cut(s)	61, 103, 148, 353, 473, 581, 629, 749, 821
MalI	GATC	9 cut(s)	221, 366, 486, 594, 680, 714, 800, 834, 947
MboI	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
MboII	GAAGA	4 cut(s)	208, 211, 229, 937
MhlI	GDGCHC	6 cut(s)	126, 423, 531, 651, 771, 918
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	163, 186, 625
MslI	CAYNNNNRTG	4 cut(s)	360, 480, 588, 828
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	5 cut(s)	237, 308, 468, 576, 696
MwoI	GCNNNNNNNGC	1 cut(s)	513
NciI	CCSGG	6 cut(s)	121, 348, 399, 627, 747, 963
NdeII	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
NlaIII	CATG	5 cut(s)	137, 790, 819, 905, 923
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	6 cut(s)	103, 148, 353, 473, 581, 821
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	91, 808
PkrI	GCNGC	2 cut(s)	868, 886
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	5 cut(s)	235, 306, 466, 574, 694
PspGI	CCWGG	5 cut(s)	235, 306, 466, 574, 694
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	5 cut(s)	252, 325, 445, 553, 673
RsaI	GTAC	7 cut(s)	50, 271, 376, 496, 604, 724, 844
RsaNI	GTAC	7 cut(s)	49, 270, 375, 495, 603, 723, 843
RseI	CAYNNNNRTG	4 cut(s)	360, 480, 588, 828
Rsr2I	CGGWCCG	1 cut(s)	252
RsrII	CGGWCCG	1 cut(s)	252
SatI	GCNGC	2 cut(s)	867, 885
Sau3AI	GATC	9 cut(s)	219, 364, 484, 592, 678, 712, 798, 832, 945
Sau96I	GGNCC	5 cut(s)	252, 325, 445, 553, 673
ScaI	AGTACT	4 cut(s)	376, 496, 604, 724
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	6 cut(s)	126, 423, 531, 651, 771, 918
SetI	ASST	9 cut(s)	150, 241, 292, 345, 465, 573, 617, 693, 960
SfcI	CTRYAG	4 cut(s)	370, 490, 598, 718
SinI	GGWCC	4 cut(s)	252, 325, 445, 673
SmiMI	CAYNNNNRTG	4 cut(s)	360, 480, 588, 828
SsiI	CCGC	6 cut(s)	67, 351, 471, 579, 699, 872
SspMI	CTAG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	982
TatI	WGTACW	4 cut(s)	374, 494, 602, 722
TfiI	GAWTC	2 cut(s)	91, 808
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	6 cut(s)	103, 148, 353, 473, 581, 821
TseI	GCWGC	2 cut(s)	866, 884
Tsp45I	GTSAC	6 cut(s)	103, 148, 353, 473, 581, 821
TspDTI	ATGAA	4 cut(s)	122, 347, 467, 575
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	4 cut(s)	252, 325, 445, 673
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	4 cut(s)	376, 496, 604, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.