Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11756786 .. 11757369

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGCATTACCAGAGCGAGTACGGCAGAGACAAGACCACCGACGAGTTCGGAAACCCGATCCTCCGGACTGAGGACCCGGTTCACCATGGTGTAACTGAAGCAGCCACCGGGTACGGCACTCATGACACTAGAACAGGGTACGGAACTCATGACACCACCGGAACGGGGTACGGGACTCATAGCACAACTGGAACAGGCTACGGAACTCATGGCACCGCCACTGGTCCCACTGGCGGGGTTCACAGCGTTTCGCTTCACCGCTCTGACAGCTCAAGCTCTTCTGAGGATGATGGGTACGGCGGGAGGAGGAAGAAGGGCTTGAAGGAGAAGATAAAGGAGAAGCTGCCAGGTGGGACACACAGGTCCGAGGACCGCTATGGTGCGACGACTGCACCTTACGGTGGACAGCACCAGGAGAAGGGAATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

156

Amino Acids

16.6

Weight (kDa)

6.9

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	13 - 155	9.6e-33	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	66
AciI	CCGC	5 cut(s)	219, 237, 262, 303, 376
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	5 cut(s)	23, 116, 143, 173, 299
AfiI	CCNNNNNNNGG	6 cut(s)	73, 168, 236, 237, 404, 421
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	349, 414
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	273, 279, 346, 451
AluI	AGCT	4 cut(s)	273, 279, 346, 451
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	66
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	2 cut(s)	104, 346
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	4 cut(s)	76, 227, 366, 373
AsuC2I	CCSGG	3 cut(s)	80, 112, 456
AsuHPI	GGTGA	2 cut(s)	77, 251
AvaII	GGWCC	4 cut(s)	76, 227, 366, 373
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	116, 333
BccI	CCATC	2 cut(s)	287, 424
BceAI	ACGGC	3 cut(s)	40, 133, 316
BciT130I	CCWGG	2 cut(s)	351, 416
BcnI	CCSGG	3 cut(s)	80, 112, 456
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	105, 347
BlsI	GCNGC	2 cut(s)	106, 348
Bme1390I	CCNGG	5 cut(s)	80, 112, 351, 416, 456
Bme18I	GGWCC	4 cut(s)	76, 227, 366, 373
BmgT120I	GGNCC	4 cut(s)	76, 227, 366, 373
BmiI	GGNNCC	3 cut(s)	78, 217, 229
BmrFI	CCNGG	5 cut(s)	80, 112, 351, 416, 456
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	3 cut(s)	80, 112, 456
BsaJI	CCNNGG	2 cut(s)	88, 369
BsaWI	WCCGGW	2 cut(s)	66, 161
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 168, 236, 237, 404, 421
Bse1I	ACTGG	3 cut(s)	196, 229, 238
BseAI	TCCGGA	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	351, 416
BseDI	CCNNGG	2 cut(s)	88, 369
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	6 cut(s)	73, 168, 236, 237, 404, 421
BseMII	CTCAG	2 cut(s)	63, 276
BseNI	ACTGG	3 cut(s)	196, 229, 238
BseRI	GAGGAG	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	116, 333
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	459
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	5 cut(s)	67, 80, 111, 162, 456
BslFI	GGGAC	3 cut(s)	190, 213, 370
BslI	CCNNNNNNNGG	6 cut(s)	73, 168, 236, 237, 404, 421
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	3 cut(s)	190, 213, 370
BsnI	GGCC	1 cut(s)	459
Bsp13I	TCCGGA	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	60, 438
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	5 cut(s)	219, 237, 262, 303, 376
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	64, 277
BspEI	TCCGGA	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	124, 151
BspLI	GGNNCC	3 cut(s)	78, 217, 229
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	196, 229, 238
BssECI	CCNNGG	2 cut(s)	88, 369
BssMI	GATC	2 cut(s)	60, 438
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	351, 416
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	72, 285
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	63, 441
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	60, 438
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 270, 392
BstNI	CCWGG	2 cut(s)	351, 416
BstSCI	CCNGG	5 cut(s)	78, 110, 349, 414, 454
BstV1I	GCAGC	2 cut(s)	116, 333
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	222, 231
CciI	TCATGA	2 cut(s)	124, 151
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	76, 227, 366, 373
Csp6I	GTAC	5 cut(s)	22, 115, 142, 172, 298
CviAII	CATG	4 cut(s)	89, 125, 152, 212
CviJI	RGCY	8 cut(s)	107, 201, 273, 279, 321, 346, 451, 459
CviKI_1	RGCY	8 cut(s)	107, 201, 273, 279, 321, 346, 451, 459
CviQI	GTAC	5 cut(s)	22, 115, 142, 172, 298
DdeI	CTNAG	2 cut(s)	72, 285
DpnI	GATC	2 cut(s)	62, 440
DpnII	GATC	2 cut(s)	60, 438
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	4 cut(s)	76, 227, 366, 373
Eco57I	CTGAAG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	349, 414
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	4 cut(s)	92, 128, 155, 215
FaiI	YATR	6 cut(s)	90, 126, 153, 183, 213, 381
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 435, 467
FaqI	GGGAC	3 cut(s)	190, 213, 370
FatI	CATG	4 cut(s)	88, 124, 151, 211
FauI	CCCGC	2 cut(s)	230, 296
Fnu4HI	GCNGC	2 cut(s)	105, 347
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	105, 347
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	105, 347
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	5 cut(s)	67, 80, 111, 162, 456
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	92, 128, 155, 215
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	5 cut(s)	67, 80, 111, 162, 456
HphI	GGTGA	2 cut(s)	77, 251
Hpy166II	GTNNAC	3 cut(s)	85, 244, 407
Hpy188I	TCNGA	4 cut(s)	53, 268, 286, 370
Hpy188III	TCNNGA	3 cut(s)	67, 125, 152
Hpy8I	GTNNAC	3 cut(s)	85, 244, 407
Hpy99I	CGWCG	2 cut(s)	47, 391
HpyAV	CCTTC	3 cut(s)	310, 319, 415
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 270, 392
HpyF3I	CTNAG	2 cut(s)	72, 285
Hsp92II	CATG	4 cut(s)	92, 128, 155, 215
HspAI	GCGC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	60, 438
LguI	GCTCTTC	1 cut(s)	286
Lsp1109I	GCAGC	2 cut(s)	116, 333
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	62, 440
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	2 cut(s)	60, 438
MboII	GAAGA	3 cut(s)	273, 325, 343
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	67, 74, 280, 300, 303, 364
MroI	TCCGGA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	5 cut(s)	67, 80, 111, 162, 456
MspR9I	CCNGG	5 cut(s)	80, 112, 351, 416, 456
MvaI	CCWGG	2 cut(s)	351, 416
MwoI	GCNNNNNNNGC	3 cut(s)	24, 270, 392
NciI	CCSGG	3 cut(s)	80, 112, 456
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	60, 438
NlaIII	CATG	4 cut(s)	92, 128, 155, 215
NlaIV	GGNNCC	3 cut(s)	78, 217, 229
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	2 cut(s)	124, 151
PciSI	GCTCTTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	106, 348
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	349, 414
PspGI	CCWGG	2 cut(s)	349, 414
PspN4I	GGNNCC	3 cut(s)	78, 217, 229
PspPI	GGNCC	4 cut(s)	76, 227, 366, 373
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	5 cut(s)	23, 116, 143, 173, 299
RsaNI	GTAC	5 cut(s)	22, 115, 142, 172, 298
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	286
SatI	GCNGC	2 cut(s)	105, 347
Sau3AI	GATC	2 cut(s)	60, 438
Sau96I	GGNCC	4 cut(s)	76, 227, 366, 373
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	5 cut(s)	80, 112, 351, 416, 456
SetI	ASST	7 cut(s)	275, 281, 348, 355, 368, 400, 453
SinI	GGWCC	4 cut(s)	76, 227, 366, 373
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SsiI	CCGC	5 cut(s)	219, 237, 262, 303, 376
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	5 cut(s)	78, 110, 349, 414, 454
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	404
TscAI	CASTG	2 cut(s)	229, 238
TseI	GCWGC	2 cut(s)	104, 346
TspGWI	ACGGA	2 cut(s)	159, 219
TspRI	CASTG	2 cut(s)	229, 238
VpaK11BI	GGWCC	4 cut(s)	76, 227, 366, 373
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.