Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

16736378 .. 16737962

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G161000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGAATTACCAGAACCAATATGGTGCAACGGCCCAATCTACAAATGATTACGGGAACCCACTCACCAACTACACCGGATCAGAGCCCCAATCTACAAATGAGTACGGGGCTACAGATGAGTATGGGAACCCAGTCACCACCTACACCAGATCAGAGCCCCACTATACAGATGAGTATGGGAACCCAGTACGCGAAAGGGGGATGATGGACAAGATCAAGGAGAAGCTCCCAGGTACTCATGACCCCTACTCATCTCATTCTCAGACAACCTACCCCACTGCACGTTACGGTGAAACCGGCTACACTGGATTGGAGCAGCACCATGGGATGATGAACAAGATGCCAGGTACTGACCCCTACTCATCTCATTCTCATACAACCGGCACCACTGCACCTTACGATGGAACCGGCTACACCGGAACAGAGTACCGCCAGCACAAGGGCACGATGGACAGGATCAAGGATAAGCTGACTGGGACTGGTGGACATAGGGTGGATGATCCCTACTCATCTCATTCTCATAAAACCGCCACCACCACACCTTACGGTGGCACCACCACCACAGCTTACGGTGACAGCACCACCACACCTTCACCTTACGGTGGCACCACCACCACACATTCACCTTACGGTGGCACCACCACCACAGCTTACGGTGACACCACCACCACACCTTCAGCTTACGGTGGCACCACCACCACACCTTCAGCTTACGGTGGCACCGCCACCACCACCTACCCCCGTGAAAAGAAGGGCATCATGGACAAGATCAAAGAGAAACTTCCTGGTGGACATCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0097305 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

269

Amino Acids

28.99

Weight (kDa)

6.25

Isoelectric Point (pI)

21.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	6 cut(s)	386, 554, 608, 638, 692, 722
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	433, 531, 726
AclWI	GGATC	3 cut(s)	88, 467, 497
AcuI	CTGAAG	2 cut(s)	663, 693
AfaI	GTAC	5 cut(s)	107, 192, 238, 352, 431
AfiI	CCNNNNNNNGG	5 cut(s)	404, 442, 551, 605, 635
AjnI	CCWGG	3 cut(s)	232, 346, 787
AluBI	AGCT	6 cut(s)	229, 472, 569, 653, 683, 713
AluI	AGCT	6 cut(s)	229, 472, 569, 653, 683, 713
AlwI	GGATC	3 cut(s)	88, 467, 497
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	7 cut(s)	58, 130, 305, 587, 588, 618, 671
BaeGI	GKGCMC	1 cut(s)	449
BanI	GGYRCC	6 cut(s)	386, 554, 608, 638, 692, 722
BanII	GRGCYC	2 cut(s)	90, 162
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	202, 398, 445
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	3 cut(s)	234, 348, 789
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	234, 348, 789
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	3 cut(s)	234, 348, 789
BmrI	ACTGGG	3 cut(s)	128, 182, 486
BmsI	GCATC	2 cut(s)	333, 768
BmuI	ACTGGG	3 cut(s)	128, 182, 486
BsaJI	CCNNGG	2 cut(s)	232, 325
BsaWI	WCCGGW	2 cut(s)	77, 419
Bsc4I	CCNNNNNNNGG	5 cut(s)	404, 442, 551, 605, 635
Bse118I	RCCGGY	3 cut(s)	299, 383, 410
Bse1I	ACTGG	5 cut(s)	134, 188, 313, 481, 487
BseBI	CCWGG	3 cut(s)	234, 348, 789
BseDI	CCNNGG	2 cut(s)	232, 325
BseGI	GGATG	3 cut(s)	210, 336, 505
BseLI	CCNNNNNNNGG	5 cut(s)	404, 442, 551, 605, 635
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	5 cut(s)	134, 188, 313, 481, 487
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	2 cut(s)	267, 378
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	6 cut(s)	386, 554, 608, 638, 692, 722
BsiSI	CCGG	5 cut(s)	78, 300, 384, 411, 420
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	5 cut(s)	404, 442, 551, 605, 635
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	3 cut(s)	90, 162, 449
Bsp143I	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	3 cut(s)	433, 531, 726
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	241
BspPI	GGATC	3 cut(s)	88, 467, 497
BspT107I	GGYRCC	6 cut(s)	386, 554, 608, 638, 692, 722
BsrFI	RCCGGY	3 cut(s)	299, 383, 410
BsrI	ACTGG	5 cut(s)	134, 188, 313, 481, 487
BssAI	RCCGGY	3 cut(s)	299, 383, 410
BssECI	CCNNGG	2 cut(s)	232, 325
BssMI	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	3 cut(s)	234, 348, 789
Bst4CI	ACNGT	8 cut(s)	293, 551, 575, 605, 635, 659, 689, 719
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	3 cut(s)	210, 336, 505
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	6 cut(s)	83, 155, 219, 462, 505, 774
BstMBI	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
BstNI	CCWGG	3 cut(s)	234, 348, 789
BstSCI	CCNGG	3 cut(s)	232, 346, 787
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	449
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	210, 336, 505
BtsI	GCAGTG	2 cut(s)	279, 390
BtsIMutI	CAGTG	3 cut(s)	279, 306, 390
Cac8I	GCNNGC	1 cut(s)	437
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	1 cut(s)	241
Cfr10I	RCCGGY	3 cut(s)	299, 383, 410
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	5 cut(s)	106, 191, 237, 351, 430
CviAII	CATG	3 cut(s)	242, 326, 763
CviQI	GTAC	5 cut(s)	106, 191, 237, 351, 430
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	6 cut(s)	82, 154, 218, 461, 504, 773
DpnII	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	90, 162
Eco57I	CTGAAG	2 cut(s)	663, 693
EcoRII	CCWGG	3 cut(s)	232, 346, 787
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	90, 162
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	245, 329, 766
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	3 cut(s)	241, 325, 762
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	3 cut(s)	217, 343, 512
FriOI	GRGCYC	2 cut(s)	90, 162
Fsp4HI	GCNGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	5 cut(s)	78, 300, 384, 411, 420
Hin1II	CATG	3 cut(s)	245, 329, 766
HpaII	CCGG	5 cut(s)	78, 300, 384, 411, 420
HphI	GGTGA	7 cut(s)	58, 130, 305, 587, 588, 618, 671
Hpy166II	GTNNAC	2 cut(s)	488, 794
Hpy188I	TCNGA	3 cut(s)	85, 157, 267
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	488, 794
HpyAV	CCTTC	4 cut(s)	603, 687, 717, 748
HpyCH4III	ACNGT	8 cut(s)	293, 551, 575, 605, 635, 659, 689, 719
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	29, 284, 395
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	245, 329, 766
Kzo9I	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
LmnI	GCTCC	2 cut(s)	234, 316
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	333, 768
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	4 cut(s)	136, 287, 575, 659
MalI	GATC	6 cut(s)	82, 154, 218, 461, 504, 773
MboI	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
MhlI	GDGCHC	3 cut(s)	90, 162, 449
MluCI	AATT	1 cut(s)	7
MseI	TTAA	1 cut(s)	805
MspI	CCGG	5 cut(s)	78, 300, 384, 411, 420
MspR9I	CCNGG	3 cut(s)	234, 348, 789
MvaI	CCWGG	3 cut(s)	234, 348, 789
MvnI	CGCG	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
NlaIII	CATG	3 cut(s)	245, 329, 766
NmuCI	GTSAC	3 cut(s)	136, 575, 659
PagI	TCATGA	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	321
Psp6I	CCWGG	3 cut(s)	232, 346, 787
PspGI	CCWGG	3 cut(s)	232, 346, 787
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	353
RsaI	GTAC	5 cut(s)	107, 192, 238, 352, 431
RsaNI	GTAC	5 cut(s)	106, 191, 237, 351, 430
SaqAI	TTAA	1 cut(s)	805
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	6 cut(s)	80, 152, 216, 459, 502, 771
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	234, 348, 789
SduI	GDGCHC	3 cut(s)	90, 162, 449
SfaNI	GCATC	2 cut(s)	333, 768
SfcI	CTRYAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	3 cut(s)	433, 531, 726
StyD4I	CCNGG	3 cut(s)	232, 346, 787
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	8 cut(s)	293, 551, 575, 605, 635, 659, 689, 719
TaiI	ACGT	1 cut(s)	289
TasI	AATT	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	805
Tru9I	TTAA	1 cut(s)	805
TscAI	CASTG	3 cut(s)	286, 313, 397
TseFI	GTSAC	3 cut(s)	136, 575, 659
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	3 cut(s)	136, 575, 659
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	3 cut(s)	286, 313, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.