Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11754959 .. 11755349

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGCAGTACCAGAGCGAGTACGGCAGAGACAAAATCACTGACGAGTTCGGAAACCCCATCTGCCGGACTGAAGACCCGGCTCACCACGGTGAGACTGAAGCAACCGTCGGGTACGGCACTCATGACTCTAGAACAAGCCGGAGGAGGAAGAAGAAGGGCTTTAAGGAGAAGATCAAGGAGAAGCTGCCAGGCGGCAACAGTGACCATAGCGGCACAACTAATACGCCACCGTTTGATACCAGAGCCCATGAGAAGAAGGGCATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

102

Amino Acids

11.45

Weight (kDa)

9.24

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	50 - 101	1.5e-16	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	195, 213
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	2 cut(s)	93, 120
AfaI	GTAC	3 cut(s)	11, 23, 116
AfiI	CCNNNNNNNGG	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	190
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	2 cut(s)	187, 289
AluI	AGCT	2 cut(s)	187, 289
Alw26I	GTCTC	2 cut(s)	24, 89
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	2 cut(s)	80, 294
AsuHPI	GGTGA	2 cut(s)	77, 104
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	2 cut(s)	68, 262
BceAI	ACGGC	2 cut(s)	40, 133
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	2 cut(s)	80, 294
BcoDI	GTCTC	2 cut(s)	24, 89
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	188, 196, 214
BlsI	GCNGC	3 cut(s)	189, 197, 215
Bme1390I	CCNGG	3 cut(s)	80, 192, 294
BmrFI	CCNGG	3 cut(s)	80, 192, 294
BpiI	GAAGAC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	80, 294
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	297
BsiSI	CCGG	4 cut(s)	67, 80, 142, 294
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	24, 89
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	174, 276
BspACI	CCGC	2 cut(s)	195, 213
BspANI	GGCC	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	174, 276
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	92, 109, 203, 234
BstDSI	CCRYGG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	177, 279
BstMAI	GTCTC	2 cut(s)	24, 89
BstMBI	GATC	2 cut(s)	174, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	3 cut(s)	78, 190, 292
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	39, 208
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	3 cut(s)	10, 22, 115
CviAII	CATG	3 cut(s)	125, 251, 265
CviJI	RGCY	7 cut(s)	83, 141, 162, 187, 248, 289, 297
CviKI_1	RGCY	7 cut(s)	83, 141, 162, 187, 248, 289, 297
CviQI	GTAC	3 cut(s)	10, 22, 115
DpnI	GATC	2 cut(s)	176, 278
DpnII	GATC	2 cut(s)	174, 276
EaeI	YGGCCR	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	93, 120
EcoRII	CCWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	3 cut(s)	128, 254, 268
FaiI	YATR	4 cut(s)	126, 210, 252, 266
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 273, 305
FatI	CATG	3 cut(s)	124, 250, 264
Fnu4HI	GCNGC	3 cut(s)	188, 196, 214
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	188, 196, 214
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	188, 196, 214
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	4 cut(s)	67, 80, 142, 294
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	128, 254, 268
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	4 cut(s)	67, 80, 142, 294
HphI	GGTGA	2 cut(s)	77, 104
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	125, 132
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	151, 253
HpyCH4III	ACNGT	4 cut(s)	92, 109, 203, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	128, 254, 268
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	174, 276
LpnPI	CCDG	7 cut(s)	26, 80, 93, 155, 177, 204, 256
Lsp1109I	GCAGC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	176, 278
MboI	GATC	2 cut(s)	174, 276
MboII	GAAGA	5 cut(s)	86, 163, 166, 184, 268
MhlI	GDGCHC	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	138, 141
MseI	TTAA	2 cut(s)	165, 304
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	4 cut(s)	67, 80, 142, 294
MspR9I	CCNGG	3 cut(s)	80, 192, 294
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	24
NciI	CCSGG	2 cut(s)	80, 294
NdeII	GATC	2 cut(s)	174, 276
NlaIII	CATG	3 cut(s)	128, 254, 268
NmuCI	GTSAC	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	189, 197, 215
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
RsaI	GTAC	3 cut(s)	11, 23, 116
RsaNI	GTAC	3 cut(s)	10, 22, 115
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	165, 304
SatI	GCNGC	3 cut(s)	188, 196, 214
Sau3AI	GATC	2 cut(s)	174, 276
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	80, 192, 294
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	2 cut(s)	189, 291
SmiMI	CAYNNNNRTG	1 cut(s)	90
SsiI	CCGC	2 cut(s)	195, 213
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	78, 190, 292
TaaI	ACNGT	4 cut(s)	92, 109, 203, 234
TauI	GCSGC	2 cut(s)	198, 216
Tru1I	TTAA	2 cut(s)	165, 304
Tru9I	TTAA	2 cut(s)	165, 304
TscAI	CASTG	2 cut(s)	46, 208
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	203
TspRI	CASTG	2 cut(s)	46, 208
XbaI	TCTAGA	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.