Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11803676 .. 11805083

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCACATTACCAGAGCGAATACCCCACAGAGTCTCCCACAGACGAGTACGGCAACCCCGTTACCCGCACTGACGAGTATGGCAACCCGATTCACCACGGCGTGACCGGAGCAACCACCGGGCACGGCATTCATGACACCACTCATGTCACCGGAACCGGCTACGGAACTCACGGCACCGGTACTGCACCCACTGGTCACGGCGTCACTACTCTCCCGCGCTCCGGCAGCTCCAGCTCTAGCTCCTCTGAGGATGATGGTTATGGTGGAAGGAGGAAGAAGAAGGGTTTGAAGGAGAAGATCAAGGAGAAGATGCCAGGTGGCACACACCGGTCCGACGACCCCTACGGTACGACCCCGACTACCACACCTTATGGTGGACAGCACCAGGATAAGGGAGTGGTGGACAAAATCAAAGAGAAGCTCCCAGGTGGTCACAAGGACGATCCCTACAGTACTACTCAGAGAACTACTACACCGGGTTACGGCAGGGCCGGAGAGCACCGTGAGAATAAGGGGGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGGACGATCCCTACAGTACTACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGGGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGGACGATCCCTACAGTACTACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGGACGATCCCTACAGTACTACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGGACGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTATGGCATGGGTTACGGCAGGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGTGGTCACAAGGACGATCCCTACAGTACTACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAAGGCATGGTTGATAAGATCAAGGAGAAGCTGCCAGGTGGTCACAAGGATGATCCCTACAGTACTACTCACACCACCACGACTGCTGCACCGGCTTATGGTACTGCAACAGGGGAGCACCATGAGAAGAAGGGAATGATGGACAAGATCAAGGAGAAGCTTCCCGGTGGACACAGCACCACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

438

Amino Acids

46.9

Weight (kDa)

7.05

Isoelectric Point (pI)

17.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	13 - 146	2.2e-28	Dehydrin
Dehydrin	PF00257	126 - 186	1.6e-13	Dehydrin
Dehydrin	PF00257	164 - 226	4.8e-13	Dehydrin
Dehydrin	PF00257	206 - 266	7.3e-13	Dehydrin
Dehydrin	PF00257	245 - 306	1.1e-11	Dehydrin
Dehydrin	PF00257	286 - 350	7.8e-13	Dehydrin
Dehydrin	PF00257	328 - 390	6.8e-14	Dehydrin
Dehydrin	PF00257	370 - 433	9.1e-18	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	1 cut(s)	220
AciI	CCGC	6 cut(s)	67, 218, 552, 672, 792, 912
AclWI	GGATC	7 cut(s)	440, 560, 680, 800, 920, 1052, 1172
AcoI	YGGCCR	4 cut(s)	612, 732, 852, 1104
AcyI	GRCGYC	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	103
AgeI	ACCGGT	2 cut(s)	179, 330
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	9 cut(s)	316, 387, 427, 547, 667, 787, 907, 1039, 1159
Alw21I	GWGCWC	7 cut(s)	504, 624, 744, 864, 996, 1116, 1245
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	7 cut(s)	440, 560, 680, 800, 920, 1052, 1172
AoxI	GGCC	6 cut(s)	492, 612, 732, 852, 984, 1104
ApeKI	GCWGC	3 cut(s)	228, 1156, 1211
AsiGI	ACCGGT	2 cut(s)	179, 330
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	8 cut(s)	333, 492, 526, 646, 766, 886, 984, 1018
AsuC2I	CCSGG	8 cut(s)	121, 480, 600, 720, 840, 960, 1092, 1290
AsuHPI	GGTGA	2 cut(s)	86, 142
AvaII	GGWCC	6 cut(s)	333, 526, 646, 766, 886, 1018
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	176
Bbv12I	GWGCWC	7 cut(s)	504, 624, 744, 864, 996, 1116, 1245
BbvI	GCAGC	3 cut(s)	240, 1143, 1198
BccI	CCATC	2 cut(s)	251, 1258
BciT130I	CCWGG	9 cut(s)	318, 389, 429, 549, 669, 789, 909, 1041, 1161
BcnI	CCSGG	8 cut(s)	121, 480, 600, 720, 840, 960, 1092, 1290
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	7 cut(s)	451, 571, 691, 811, 931, 1063, 1183
BisI	GCNGC	3 cut(s)	229, 1157, 1212
BlsI	GCNGC	3 cut(s)	230, 1158, 1213
BmcAI	AGTACT	7 cut(s)	457, 577, 697, 817, 937, 1069, 1189
Bme18I	GGWCC	6 cut(s)	333, 526, 646, 766, 886, 1018
BmgT120I	GGNCC	8 cut(s)	333, 492, 526, 646, 766, 886, 984, 1018
BmiI	GGNNCC	2 cut(s)	157, 178
BmsI	GCATC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	217
BpuMI	CCSGG	8 cut(s)	121, 480, 600, 720, 840, 960, 1092, 1290
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	97, 427
BsaWI	WCCGGW	4 cut(s)	107, 152, 179, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse118I	RCCGGY	4 cut(s)	158, 179, 330, 1216
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	9 cut(s)	318, 389, 429, 549, 669, 789, 909, 1041, 1161
BseDI	CCNNGG	2 cut(s)	97, 427
BseGI	GGATG	2 cut(s)	259, 1180
BseMII	CTCAG	2 cut(s)	240, 476
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	240, 1143, 1198
BsgI	GTGCAG	2 cut(s)	171, 1197
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	6 cut(s)	494, 614, 734, 854, 986, 1106
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	2 cut(s)	179, 330
BsiHKAI	GWGCWC	7 cut(s)	504, 624, 744, 864, 996, 1116, 1245
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	6 cut(s)	494, 614, 734, 854, 986, 1106
Bsp1286I	GDGCHC	8 cut(s)	126, 504, 624, 744, 864, 996, 1116, 1245
BspACI	CCGC	6 cut(s)	67, 218, 552, 672, 792, 912
BspANI	GGCC	6 cut(s)	494, 614, 734, 854, 986, 1106
BspCNI	CTCAG	2 cut(s)	241, 475
BspFNI	CGCG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	157, 178
BspPI	GGATC	7 cut(s)	440, 560, 680, 800, 920, 1052, 1172
BspT107I	GGYRCC	1 cut(s)	176
BsrFI	RCCGGY	4 cut(s)	158, 179, 330, 1216
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	4 cut(s)	158, 179, 330, 1216
BssECI	CCNNGG	2 cut(s)	97, 427
BssNI	GRCGYC	1 cut(s)	204
Bst2UI	CCWGG	9 cut(s)	318, 389, 429, 549, 669, 789, 909, 1041, 1161
BstACI	GRCGYC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	249, 462
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	259, 1180
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 234, 1217
BstNI	CCWGG	9 cut(s)	318, 389, 429, 549, 669, 789, 909, 1041, 1161
BstSFI	CTRYAG	7 cut(s)	451, 571, 691, 811, 931, 1063, 1183
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	240, 1143, 1198
BsuRI	GGCC	6 cut(s)	494, 614, 734, 854, 986, 1106
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	259, 1180
BtsIMutI	CAGTG	2 cut(s)	69, 192
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	4 cut(s)	158, 179, 330, 1216
Cfr13I	GGNCC	8 cut(s)	333, 492, 526, 646, 766, 886, 984, 1018
CpoI	CGGWCCG	1 cut(s)	333
CseI	GACGC	1 cut(s)	193
CsiI	ACCWGGT	1 cut(s)	1039
CspAI	ACCGGT	2 cut(s)	179, 330
CspI	CGGWCCG	1 cut(s)	333
CviAII	CATG	5 cut(s)	134, 146, 970, 1132, 1247
DdeI	CTNAG	2 cut(s)	249, 462
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	4 cut(s)	612, 732, 852, 1104
Eco47I	GGWCC	6 cut(s)	333, 526, 646, 766, 886, 1018
EcoRII	CCWGG	9 cut(s)	316, 387, 427, 547, 667, 787, 907, 1039, 1159
FaeI	CATG	5 cut(s)	137, 149, 973, 1135, 1250
FatI	CATG	5 cut(s)	133, 145, 969, 1131, 1246
FauI	CCCGC	2 cut(s)	74, 225
Fnu4HI	GCNGC	3 cut(s)	229, 1157, 1212
FokI	GGATG	2 cut(s)	266, 1187
Fsp4HI	GCNGC	3 cut(s)	229, 1157, 1212
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	3 cut(s)	229, 1157, 1212
GsuI	CTGGAG	1 cut(s)	217
HaeIII	GGCC	6 cut(s)	494, 614, 734, 854, 986, 1106
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	5 cut(s)	137, 149, 973, 1135, 1250
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	1283
HinfI	GANTC	2 cut(s)	32, 91
HphI	GGTGA	2 cut(s)	86, 142
Hpy166II	GTNNAC	8 cut(s)	380, 406, 526, 646, 766, 886, 1018, 1295
Hpy188I	TCNGA	3 cut(s)	250, 337, 465
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	8 cut(s)	380, 406, 526, 646, 766, 886, 1018, 1295
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	4 cut(s)	264, 277, 286, 1249
HpyCH4V	TGCA	3 cut(s)	188, 1214, 1232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 234, 1217
HpyF3I	CTNAG	2 cut(s)	249, 462
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	5 cut(s)	137, 149, 973, 1135, 1250
HspAI	GCGC	1 cut(s)	220
LmnI	GCTCC	6 cut(s)	110, 227, 236, 248, 429, 1240
Lsp1109I	GCAGC	3 cut(s)	240, 1143, 1198
LweI	GCATC	1 cut(s)	303
MabI	ACCWGGT	1 cut(s)	1039
MaeI	CTAG	1 cut(s)	240
MboII	GAAGA	5 cut(s)	289, 292, 310, 322, 1264
MhlI	GDGCHC	8 cut(s)	126, 504, 624, 744, 864, 996, 1116, 1245
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	3 cut(s)	244, 256, 267
MslI	CAYNNNNRTG	1 cut(s)	1173
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	9 cut(s)	318, 389, 429, 549, 669, 789, 909, 1041, 1161
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	3 cut(s)	228, 234, 1217
NciI	CCSGG	8 cut(s)	121, 480, 600, 720, 840, 960, 1092, 1290
NlaIII	CATG	5 cut(s)	137, 149, 973, 1135, 1250
NlaIV	GGNNCC	2 cut(s)	157, 178
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	91
PinAI	ACCGGT	2 cut(s)	179, 330
PkrI	GCNGC	3 cut(s)	230, 1158, 1213
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	9 cut(s)	316, 387, 427, 547, 667, 787, 907, 1039, 1159
PspGI	CCWGG	9 cut(s)	316, 387, 427, 547, 667, 787, 907, 1039, 1159
PspN4I	GGNNCC	2 cut(s)	157, 178
PspPI	GGNCC	8 cut(s)	333, 492, 526, 646, 766, 886, 984, 1018
RseI	CAYNNNNRTG	1 cut(s)	1173
Rsr2I	CGGWCCG	1 cut(s)	333
RsrII	CGGWCCG	1 cut(s)	333
SatI	GCNGC	3 cut(s)	229, 1157, 1212
Sau96I	GGNCC	8 cut(s)	333, 492, 526, 646, 766, 886, 984, 1018
ScaI	AGTACT	7 cut(s)	457, 577, 697, 817, 937, 1069, 1189
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	8 cut(s)	126, 504, 624, 744, 864, 996, 1116, 1245
SexAI	ACCWGGT	1 cut(s)	1039
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	7 cut(s)	451, 571, 691, 811, 931, 1063, 1183
SinI	GGWCC	6 cut(s)	333, 526, 646, 766, 886, 1018
SmiMI	CAYNNNNRTG	1 cut(s)	1173
SsiI	CCGC	6 cut(s)	67, 218, 552, 672, 792, 912
SspMI	CTAG	1 cut(s)	240
TaqI	TCGA	1 cut(s)	1309
TatI	WGTACW	7 cut(s)	455, 575, 695, 815, 935, 1067, 1187
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	2 cut(s)	76, 199
TseI	GCWGC	3 cut(s)	228, 1156, 1211
TspDTI	ATGAA	2 cut(s)	122, 908
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	76, 199
VpaK11BI	GGWCC	6 cut(s)	333, 526, 646, 766, 886, 1018
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	7 cut(s)	457, 577, 697, 817, 937, 1069, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.