Rmu_sc0026349.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026349.1
OG0000632
Physical Location & Seq
Forward (+)
58 .. 489
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026349.1_g000001.1.cds

Sequence Viewer

Length: 324 bp
atggcacggccactgaacccactgtcttcgctgcaacaacggcgggcggtcacggtcgtcccgctccacctctctgacagctcaagctcttctgaggatgatgggtacggcgggaggaggaagaagaagggtttgaaggagaagatcaagaagaagctgccaggcggcaacagtgaccatagcggcacaactaatacgccaccgtttgataccagagcccatgagaagaagggcatgatggaccaaagagaagcttcccggccaccattaaatcgactgatcgatggactatctatatatgcatcttatgtaaatgcttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.75

Weight (kDa)

9.94

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 64
AciI CCGC 6 cut(s) 43, 47, 62, 111, 165, 183
AcoI YGGCCR 2 cut(s) 8, 260
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 81, 87, 157, 254
AluI AGCT 4 cut(s) 81, 87, 157, 254
AoxI GGCC 2 cut(s) 8, 260
ApeKI GCWGC 2 cut(s) 31, 157
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 259
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 18, 144
BccI CCATC 3 cut(s) 95, 232, 278
BceAI ACGGC 3 cut(s) 23, 56, 124
BciT130I CCWGG 1 cut(s) 162
BcnI CCSGG 1 cut(s) 259
BisI GCNGC 4 cut(s) 32, 158, 166, 184
BlsI GCNGC 4 cut(s) 33, 159, 167, 185
Bme1390I CCNGG 2 cut(s) 162, 259
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 162, 259
BmsI GCATC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 259
Bsa29I ATCGAT 1 cut(s) 282
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 18, 144
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 10, 262
BshVI ATCGAT 1 cut(s) 282
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 2 cut(s) 10, 262
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 144, 279
BspACI CCGC 6 cut(s) 43, 47, 62, 111, 165, 183
BspANI GGCC 2 cut(s) 10, 262
BspCNI CTCAG 1 cut(s) 85
BspDI ATCGAT 1 cut(s) 282
BspQI GCTCTTC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 64
BssMI GATC 2 cut(s) 144, 279
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 4 cut(s) 24, 55, 173, 204
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 2 cut(s) 147, 282
BstMBI GATC 2 cut(s) 144, 279
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 160, 257
BstV1I GCAGC 2 cut(s) 18, 144
BstV2I GAAGAC 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 10, 262
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 11, 20, 178
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 241
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 1 cut(s) 106
CviAII CATG 2 cut(s) 221, 235
CviJI RGCY 7 cut(s) 10, 81, 87, 157, 218, 254, 262
CviKI_1 RGCY 7 cut(s) 10, 81, 87, 157, 218, 254, 262
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 93
DpnI GATC 2 cut(s) 146, 281
DpnII GATC 2 cut(s) 144, 279
EaeI YGGCCR 2 cut(s) 8, 260
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 2 cut(s) 224, 238
FaiI YATR 7 cut(s) 180, 222, 236, 296, 298, 300, 309
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 220, 234
FauI CCCGC 3 cut(s) 36, 69, 104
Fnu4HI GCNGC 4 cut(s) 32, 158, 166, 184
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 4 cut(s) 32, 158, 166, 184
GluI GCNGC 4 cut(s) 32, 158, 166, 184
HaeIII GGCC 2 cut(s) 10, 262
HapII CCGG 1 cut(s) 259
Hin1II CATG 2 cut(s) 224, 238
HindIII AAGCTT 1 cut(s) 252
HpaII CCGG 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 76, 94
Hpy188III TCNNGA 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 121, 130, 223
HpyCH4III ACNGT 4 cut(s) 24, 55, 173, 204
HpyCH4V TGCA 2 cut(s) 34, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 224, 238
Kzo9I GATC 2 cut(s) 144, 279
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 4 cut(s) 147, 174, 226, 272
Lsp1109I GCAGC 2 cut(s) 18, 144
LweI GCATC 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 49, 173
MalI GATC 2 cut(s) 146, 281
MbiI CCGCTC 1 cut(s) 64
MboI GATC 2 cut(s) 144, 279
MboII GAAGA 7 cut(s) 18, 81, 133, 136, 154, 163, 238
MhlI GDGCHC 1 cut(s) 220
MnlI CCTC 4 cut(s) 80, 88, 108, 111
Mph1103I ATGCAT 1 cut(s) 304
MseI TTAA 1 cut(s) 269
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 2 cut(s) 162, 259
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 259
NdeII GATC 2 cut(s) 144, 279
NlaIII CATG 2 cut(s) 224, 238
NmuCI GTSAC 2 cut(s) 49, 173
NsiI ATGCAT 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 94
PkrI GCNGC 4 cut(s) 33, 159, 167, 185
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 241
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 4 cut(s) 32, 158, 166, 184
Sau3AI GATC 2 cut(s) 144, 279
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 162, 259
SduI GDGCHC 1 cut(s) 220
SetI ASST 5 cut(s) 72, 83, 89, 159, 256
SfaNI GCATC 1 cut(s) 311
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SsiI CCGC 6 cut(s) 43, 47, 62, 111, 165, 183
StyD4I CCNGG 2 cut(s) 160, 257
TaaI ACNGT 4 cut(s) 24, 55, 173, 204
TaqI TCGA 2 cut(s) 274, 282
TauI GCSGC 2 cut(s) 168, 186
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 3 cut(s) 18, 27, 178
TseFI GTSAC 2 cut(s) 49, 173
TseI GCWGC 2 cut(s) 31, 157
Tsp45I GTSAC 2 cut(s) 49, 173
TspRI CASTG 3 cut(s) 18, 27, 178
VpaK11BI GGWCC 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.