Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

10965553 .. 10966941

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G010840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGCATTACCAGAGCGAGTACGGTAGAGACAAGACCACCGACGAGATCCTCCGGAGTGAGGACCCGGTTAACCATGGTTTAACTGAAGCAACCGGCATTCATGACACTAAAACAGGCTACGGAACTCATGGCACGGCCACTGGGCCCACTGGCTTCGCTGCAACAACGGCCGGTGGTCACGGGTTCCCGAATCACCGGTCTGTCATCTCAAGCTCTTCTGAGGATGATGGGTACGGAGGGAGAAGGGAGAGGAAGGGTTTGAAGGAGAAGATGCCAGGTGGCACACACCGGTCCAACGACCCCTACGATACGACCCCGATTACCACACCTTATGGTGGACAGCACCAGGATAAGGGAGTGATGAACAAACTCAAAGAGAAGCTCCCAGGAGGTCACAAGGACGATCCCTACAGTACAACTCATACCACTGCTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGGTGGTCACAAGGACGATCCCCACAGTGCAACTCATACCACTACTACACCGGGTTACAGCGTGGCCGGAGAGCACCATGAGAACAAGGGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGGTGGTCACAAGGACGATCCCCACAGTACAACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGGTGGTCACAAGGATGATCCCTACAGTACTACTGACACCACTACTACACCGGGTTACGGCGTGGCCGCAGAGCACCATGAGAATAAGGGCTTGAAGGAGAAGATTGAGAAGCTGCCAGGTGGCAACAGTGACCATAGCGGCACTACTAATACGCCACCTTTTGACACCAGAACCCATGAGAAGAAGGGATTGATGGACAAGATTAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

326

Amino Acids

35.1

Weight (kDa)

6.56

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	27 - 133	1.8e-14	Dehydrin
Dehydrin	PF00257	113 - 173	3.6e-14	Dehydrin
Dehydrin	PF00257	177 - 213	3e-07	Dehydrin
Dehydrin	PF00257	208 - 253	1.7e-09	Dehydrin
Dehydrin	PF00257	279 - 326	4.3e-11	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	2 cut(s)	816, 888
AclWI	GGATC	5 cut(s)	43, 401, 521, 641, 761
AcoI	YGGCCR	7 cut(s)	138, 171, 453, 573, 693, 813, 970
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	5 cut(s)	23, 236, 418, 658, 778
AfiI	CCNNNNNNNGG	6 cut(s)	61, 338, 355, 446, 686, 806
AgeI	ACCGGT	2 cut(s)	198, 291
AgsI	TTSAA	2 cut(s)	265, 844
AjnI	CCWGG	7 cut(s)	277, 348, 388, 508, 628, 748, 865
AluBI	AGCT	7 cut(s)	216, 385, 505, 625, 745, 862, 964
AluI	AGCT	7 cut(s)	216, 385, 505, 625, 745, 862, 964
Alw21I	GWGCWC	4 cut(s)	465, 585, 705, 825
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	5 cut(s)	43, 401, 521, 641, 761
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	8 cut(s)	138, 146, 171, 453, 573, 693, 813, 970
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	161, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsiGI	ACCGGT	2 cut(s)	198, 291
AspS9I	GGNCC	4 cut(s)	64, 146, 147, 294
AsuC2I	CCSGG	6 cut(s)	68, 441, 561, 681, 801, 969
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	64, 294
BaeGI	GKGCMC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	4 cut(s)	465, 585, 705, 825
BbvI	GCAGC	2 cut(s)	148, 849
BccI	CCATC	2 cut(s)	224, 937
BceAI	ACGGC	5 cut(s)	153, 186, 463, 703, 823
BciT130I	CCWGG	7 cut(s)	279, 350, 390, 510, 630, 750, 867
BcnI	CCSGG	6 cut(s)	68, 441, 561, 681, 801, 969
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	2 cut(s)	412, 772
BisI	GCNGC	4 cut(s)	162, 816, 863, 889
BlsI	GCNGC	4 cut(s)	163, 817, 864, 890
BmcAI	AGTACT	1 cut(s)	778
Bme18I	GGWCC	2 cut(s)	64, 294
BmgT120I	GGNCC	4 cut(s)	64, 146, 147, 294
BmiI	GGNNCC	3 cut(s)	66, 148, 188
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	196
BpuMI	CCSGG	6 cut(s)	68, 441, 561, 681, 801, 969
BsaJI	CCNNGG	2 cut(s)	76, 388
BsaWI	WCCGGW	3 cut(s)	54, 198, 291
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 338, 355, 446, 686, 806
Bse118I	RCCGGY	4 cut(s)	95, 173, 198, 291
Bse1I	ACTGG	2 cut(s)	148, 157
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	7 cut(s)	279, 350, 390, 510, 630, 750, 867
BseDI	CCNNGG	2 cut(s)	76, 388
BseGI	GGATG	2 cut(s)	232, 769
BseLI	CCNNNNNNNGG	6 cut(s)	61, 338, 355, 446, 686, 806
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	148, 157
BseSI	GKGCMC	1 cut(s)	150
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	148, 849
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	8 cut(s)	140, 148, 173, 455, 575, 695, 815, 972
BshTI	ACCGGT	2 cut(s)	198, 291
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	4 cut(s)	465, 585, 705, 825
BslI	CCNNNNNNNGG	6 cut(s)	61, 338, 355, 446, 686, 806
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	8 cut(s)	140, 148, 173, 455, 575, 695, 815, 972
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	5 cut(s)	150, 465, 585, 705, 825
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	816, 888
BspANI	GGCC	8 cut(s)	140, 148, 173, 455, 575, 695, 815, 972
BspCNI	CTCAG	1 cut(s)	214
BspEI	TCCGGA	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	66, 148, 188
BspPI	GGATC	5 cut(s)	43, 401, 521, 641, 761
BspQI	GCTCTTC	1 cut(s)	223
BsrFI	RCCGGY	4 cut(s)	95, 173, 198, 291
BsrI	ACTGG	2 cut(s)	148, 157
BssAI	RCCGGY	4 cut(s)	95, 173, 198, 291
BssECI	CCNNGG	2 cut(s)	76, 388
BssMI	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	7 cut(s)	279, 350, 390, 510, 630, 750, 867
Bst4CI	ACNGT	6 cut(s)	26, 416, 536, 656, 776, 878
Bst6I	CTCTTC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	232, 769
BstKTI	GATC	8 cut(s)	51, 409, 495, 529, 615, 649, 735, 769
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	7 cut(s)	279, 350, 390, 510, 630, 750, 867
BstSFI	CTRYAG	2 cut(s)	412, 772
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	148, 849
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	8 cut(s)	140, 148, 173, 455, 575, 695, 815, 972
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	232, 769
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	5 cut(s)	141, 150, 429, 541, 883
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	4 cut(s)	95, 173, 198, 291
Cfr13I	GGNCC	4 cut(s)	64, 146, 147, 294
CsiI	ACCWGGT	3 cut(s)	508, 628, 748
Csp6I	GTAC	5 cut(s)	22, 235, 417, 657, 777
CspAI	ACCGGT	2 cut(s)	198, 291
CviAII	CATG	8 cut(s)	77, 104, 131, 467, 587, 707, 827, 926
CviQI	GTAC	5 cut(s)	22, 235, 417, 657, 777
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	8 cut(s)	50, 408, 494, 528, 614, 648, 734, 768
DpnII	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
EaeI	YGGCCR	7 cut(s)	138, 171, 453, 573, 693, 813, 970
EagI	CGGCCG	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	64, 294
Eco52I	CGGCCG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	7 cut(s)	277, 348, 388, 508, 628, 748, 865
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	8 cut(s)	80, 107, 134, 470, 590, 710, 830, 929
FalI	AAGNNNNNCTT	2 cut(s)	948, 980
FatI	CATG	8 cut(s)	76, 103, 130, 466, 586, 706, 826, 925
Fnu4HI	GCNGC	4 cut(s)	162, 816, 863, 889
FokI	GGATG	2 cut(s)	239, 776
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	4 cut(s)	162, 816, 863, 889
GluI	GCNGC	4 cut(s)	162, 816, 863, 889
HaeIII	GGCC	8 cut(s)	140, 148, 173, 455, 575, 695, 815, 972
Hin1II	CATG	8 cut(s)	80, 107, 134, 470, 590, 710, 830, 929
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	5 cut(s)	73, 341, 487, 607, 727
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	3 cut(s)	55, 104, 190
Hpy8I	GTNNAC	5 cut(s)	73, 341, 487, 607, 727
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	5 cut(s)	240, 250, 259, 838, 928
HpyCH4III	ACNGT	6 cut(s)	26, 416, 536, 656, 776, 878
HpyCH4V	TGCA	2 cut(s)	164, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	8 cut(s)	80, 107, 134, 470, 590, 710, 830, 929
Kpn2I	TCCGGA	1 cut(s)	54
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	4, 390
Lsp1109I	GCAGC	2 cut(s)	148, 849
LweI	GCATC	1 cut(s)	264
MabI	ACCWGGT	3 cut(s)	508, 628, 748
MalI	GATC	8 cut(s)	50, 408, 494, 528, 614, 648, 734, 768
MboI	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
MboII	GAAGA	4 cut(s)	210, 283, 862, 943
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	5 cut(s)	150, 465, 585, 705, 825
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	55, 62, 217, 233, 246, 386
MroI	TCCGGA	1 cut(s)	54
MseI	TTAA	3 cut(s)	72, 83, 954
MslI	CAYNNNNRTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	7 cut(s)	279, 350, 390, 510, 630, 750, 867
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	6 cut(s)	68, 441, 561, 681, 801, 969
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
NlaIII	CATG	8 cut(s)	80, 107, 134, 470, 590, 710, 830, 929
NlaIV	GGNNCC	3 cut(s)	66, 148, 188
NmuCI	GTSAC	6 cut(s)	179, 395, 515, 635, 755, 878
PagI	TCATGA	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	193
PinAI	ACCGGT	2 cut(s)	198, 291
PkrI	GCNGC	4 cut(s)	163, 817, 864, 890
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	7 cut(s)	277, 348, 388, 508, 628, 748, 865
PspGI	CCWGG	7 cut(s)	277, 348, 388, 508, 628, 748, 865
PspN4I	GGNNCC	3 cut(s)	66, 148, 188
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	64, 146, 147, 294
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	5 cut(s)	23, 236, 418, 658, 778
RsaNI	GTAC	5 cut(s)	22, 235, 417, 657, 777
RseI	CAYNNNNRTG	1 cut(s)	762
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	72, 83, 954
SatI	GCNGC	4 cut(s)	162, 816, 863, 889
Sau3AI	GATC	8 cut(s)	48, 406, 492, 526, 612, 646, 732, 766
Sau96I	GGNCC	4 cut(s)	64, 146, 147, 294
ScaI	AGTACT	1 cut(s)	778
SduI	GDGCHC	5 cut(s)	150, 465, 585, 705, 825
SexAI	ACCWGGT	3 cut(s)	508, 628, 748
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	2 cut(s)	412, 772
SinI	GGWCC	2 cut(s)	64, 294
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SsiI	CCGC	2 cut(s)	816, 888
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	6 cut(s)	26, 416, 536, 656, 776, 878
TatI	WGTACW	3 cut(s)	416, 656, 776
TauI	GCSGC	2 cut(s)	818, 891
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	72, 83, 954
Tru9I	TTAA	3 cut(s)	72, 83, 954
TscAI	CASTG	5 cut(s)	148, 157, 436, 541, 883
TseFI	GTSAC	6 cut(s)	179, 395, 515, 635, 755, 878
TseI	GCWGC	2 cut(s)	161, 862
Tsp45I	GTSAC	6 cut(s)	179, 395, 515, 635, 755, 878
TspDTI	ATGAA	2 cut(s)	92, 380
TspGWI	ACGGA	2 cut(s)	138, 252
TspRI	CASTG	5 cut(s)	148, 157, 436, 541, 883
VpaK11BI	GGWCC	2 cut(s)	64, 294
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.