Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11665046 .. 11666621

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1140000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCGAATTATGGTAATACAACAGCCGAAAAAACTACCGAGGAGTACTTCGGGAACCCAACTTACAACGGTAGCGCAGGAGCCGATAGGACCGACGAGTTCGGGAACGCGGTTCAACACGGTCGGACTAATACCGGCTACGGGACTGCTGATCCTAAGACTCGTGATGAAGGGATTGTTGGGCATCATGGCGGCCCCGCTGTGCTTCAGCGCTCAGGAAGCTCTAGCTCTTCGTCTGAAGATGATGGGCTAGGTGGGAGAAGGAAGAAGGGACTGAAAGAGAAGATAAAGGAGAAGCTACCAGGTGGTGGTAACAAGGATGACCAGTACTCTGGTGGAACGCAGACCACTACCCCTTACGGTGGTGGGACGACTTACAAAGTAGGCGAGCAACACCAGGAGAAGGGTACGACGGACAAGATCAAGAAGAAGCTGCCAGGTGGGAATAGGGATGACCAGTATTCTCATGACACGTCAACTACTGCTGCAGCTTATGGTGGGACTGGGCGCACCGGAGAGCCCCAGGAAAAGAAGAACATGATGGACAAGATCAAAGAAAAGCTTCCTGGTGGCCACGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0097305 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

195

Amino Acids

20.55

Weight (kDa)

7.86

Isoelectric Point (pI)

20.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	20 - 148	1.3e-28	Dehydrin
Dehydrin	PF00257	134 - 192	5.6e-15	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	1 cut(s)	110
AciI	CCGC	3 cut(s)	110, 192, 198
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	571
AcuI	CTGAAG	2 cut(s)	191, 258
AfaI	GTAC	3 cut(s)	47, 329, 409
AfeI	AGCGCT	1 cut(s)	212
AfiI	CCNNNNNNNGG	4 cut(s)	141, 308, 362, 403
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	474
AjnI	CCWGG	5 cut(s)	301, 396, 436, 522, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	6 cut(s)	222, 228, 298, 433, 491, 562
AluI	AGCT	6 cut(s)	222, 228, 298, 433, 491, 562
AlwI	GGATC	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	212
AoxI	GGCC	2 cut(s)	193, 571
ApeKI	GCWGC	3 cut(s)	433, 485, 488
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	3 cut(s)	77, 213, 510
AspS9I	GGNCC	2 cut(s)	90, 194
AvaII	GGWCC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	522
BauI	CACGAG	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	420, 472, 500
BccI	CCATC	2 cut(s)	239, 535
BciT130I	CCWGG	5 cut(s)	303, 398, 438, 524, 567
BfaI	CTAG	2 cut(s)	225, 251
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	214
BisI	GCNGC	4 cut(s)	193, 434, 486, 489
BlsI	GCNGC	4 cut(s)	194, 435, 487, 490
BmcAI	AGTACT	2 cut(s)	47, 329
Bme1390I	CCNGG	5 cut(s)	303, 398, 438, 524, 567
Bme18I	GGWCC	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	474
BmgT120I	GGNCC	2 cut(s)	90, 194
BmiI	GGNNCC	3 cut(s)	56, 82, 196
BmrFI	CCNGG	5 cut(s)	303, 398, 438, 524, 567
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	39, 522
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 308, 362, 403
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	325, 457, 508
BseBI	CCWGG	5 cut(s)	303, 398, 438, 524, 567
BseDI	CCNNGG	2 cut(s)	39, 522
BseGI	GGATG	2 cut(s)	325, 457
BseLI	CCNNNNNNNGG	4 cut(s)	141, 308, 362, 403
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	3 cut(s)	325, 457, 508
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	420, 472, 500
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	195, 573
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	135, 513
BslFI	GGGAC	4 cut(s)	157, 285, 382, 514
BslI	CCNNNNNNNGG	4 cut(s)	141, 308, 362, 403
BsmFI	GGGAC	4 cut(s)	157, 285, 382, 514
BsnI	GGCC	2 cut(s)	195, 573
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	151, 420, 549
BspACI	CCGC	3 cut(s)	110, 192, 198
BspANI	GGCC	2 cut(s)	195, 573
BspCNI	CTCAG	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	3 cut(s)	56, 82, 196
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	325, 457, 508
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	39, 522
BssMI	GATC	3 cut(s)	151, 420, 549
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	5 cut(s)	303, 398, 438, 524, 567
Bst4CI	ACNGT	3 cut(s)	71, 122, 362
Bst6I	CTCTTC	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	156, 214
BstF5I	GGATG	2 cut(s)	325, 457
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	3 cut(s)	77, 213, 510
BstKTI	GATC	3 cut(s)	154, 423, 552
BstMBI	GATC	3 cut(s)	151, 420, 549
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	5 cut(s)	303, 398, 438, 524, 567
BstSCI	CCNGG	5 cut(s)	301, 396, 436, 522, 565
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	420, 472, 500
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	195, 573
BtrI	CACGTC	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	325, 457
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	3 cut(s)	77, 213, 510
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	90, 194
CsiI	ACCWGGT	1 cut(s)	301
Csp6I	GTAC	3 cut(s)	46, 328, 408
CviAII	CATG	3 cut(s)	188, 467, 538
CviQI	GTAC	3 cut(s)	46, 328, 408
DdeI	CTNAG	2 cut(s)	156, 214
DpnI	GATC	3 cut(s)	153, 422, 551
DpnII	GATC	3 cut(s)	151, 420, 549
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	90
Eco47III	AGCGCT	1 cut(s)	212
Eco57I	CTGAAG	2 cut(s)	191, 258
EcoRII	CCWGG	5 cut(s)	301, 396, 436, 522, 565
EcoT38I	GRGCYC	1 cut(s)	522
FaeI	CATG	3 cut(s)	191, 470, 541
FaiI	YATR	5 cut(s)	12, 189, 468, 495, 539
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	4 cut(s)	157, 285, 382, 514
FatI	CATG	3 cut(s)	187, 466, 537
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	193, 434, 486, 489
FokI	GGATG	2 cut(s)	332, 464
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	4 cut(s)	193, 434, 486, 489
FspBI	CTAG	2 cut(s)	225, 251
GlaI	GCGC	3 cut(s)	76, 212, 509
GluI	GCNGC	4 cut(s)	193, 434, 486, 489
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	195, 573
HapII	CCGG	2 cut(s)	135, 513
HhaI	GCGC	3 cut(s)	77, 213, 510
Hin1II	CATG	3 cut(s)	191, 470, 541
Hin6I	GCGC	3 cut(s)	75, 211, 508
HinP1I	GCGC	3 cut(s)	75, 211, 508
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	135, 513
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	2 cut(s)	126, 238
Hpy188III	TCNNGA	6 cut(s)	52, 103, 164, 216, 424, 467
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	2 cut(s)	98, 415
HpyAV	CCTTC	4 cut(s)	164, 255, 262, 397
HpyCH4III	ACNGT	3 cut(s)	71, 122, 362
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	2 cut(s)	156, 214
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	3 cut(s)	191, 470, 541
HspAI	GCGC	3 cut(s)	75, 211, 508
Kzo9I	GATC	3 cut(s)	151, 420, 549
LguI	GCTCTTC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	3 cut(s)	420, 472, 500
LweI	GCATC	1 cut(s)	193
MabI	ACCWGGT	1 cut(s)	301
MaeI	CTAG	2 cut(s)	225, 251
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	3 cut(s)	153, 422, 551
MboI	GATC	3 cut(s)	151, 420, 549
MboII	GAAGA	6 cut(s)	222, 251, 277, 295, 439, 544
MhlI	GDGCHC	1 cut(s)	522
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	34
Mox20I	TGGCCA	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	573
Msp20I	TGGCCA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	135, 513
MspR9I	CCNGG	5 cut(s)	303, 398, 438, 524, 567
MvaI	CCWGG	5 cut(s)	303, 398, 438, 524, 567
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	3 cut(s)	151, 420, 549
NlaIII	CATG	3 cut(s)	191, 470, 541
NlaIV	GGNNCC	3 cut(s)	56, 82, 196
PagI	TCATGA	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	561
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	4 cut(s)	194, 435, 487, 490
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	5 cut(s)	301, 396, 436, 522, 565
PspGI	CCWGG	5 cut(s)	301, 396, 436, 522, 565
PspN4I	GGNNCC	3 cut(s)	56, 82, 196
PspPI	GGNCC	2 cut(s)	90, 194
PsrI	GAACNNNNNNTAC	2 cut(s)	47, 79
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	3 cut(s)	47, 329, 409
RsaNI	GTAC	3 cut(s)	46, 328, 408
SapI	GCTCTTC	1 cut(s)	235
SatI	GCNGC	4 cut(s)	193, 434, 486, 489
Sau3AI	GATC	3 cut(s)	151, 420, 549
Sau96I	GGNCC	2 cut(s)	90, 194
ScaI	AGTACT	2 cut(s)	47, 329
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	5 cut(s)	303, 398, 438, 524, 567
SduI	GDGCHC	1 cut(s)	522
SexAI	ACCWGGT	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	90
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	3 cut(s)	110, 192, 198
SspMI	CTAG	2 cut(s)	225, 251
StyD4I	CCNGG	5 cut(s)	301, 396, 436, 522, 565
TaaI	ACNGT	3 cut(s)	71, 122, 362
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	1 cut(s)	7
TatI	WGTACW	2 cut(s)	45, 327
TauI	GCSGC	1 cut(s)	195
TseI	GCWGC	3 cut(s)	433, 485, 488
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	428
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	2 cut(s)	225, 251
ZrmI	AGTACT	2 cut(s)	47, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.