Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

7113477 .. 7114499

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0089000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCAGTACTCGATTGGATTGCACTCATTCTGTGTGTTTTAGCAAGCTTTGACAACCATGTAGGCCGTGTGGGAGCTTTAGACATAGGTGTTTGCTATGGGACGCAGGGAAATGACCTTCCTGCAGCAACAGATGTTATCAATCTCTACAAAAAACACGGCATTGCAAAAATTAGGCTCTTCGAACCTAACCATGCAGCGCTCGATGCCCTGAAAGGGAGTGGAATCGCTCCTTATATAAATGACGGTAACATCAATTACATCGCCGTCGGTAACGAGCCCGACCTTCCCGGCATCAACCGATTCTCCCCTTATGATCAATGTGTATCCTTACTTTGCCTACAATTGTCAAACCCTGGCAGTGTTCGCTTAGACTATGCTCAATTCACTGCAACAGACACGGTGGTGCAAGACGGAGCATACAGCTACCACAATCTGTTTGATGCCATGGTCGATTCTTTCGTGGCAGCGATGGAGAAAGCAGGCGGCGGAAATGTCAAAGTTGCGGTGGCTGAAAGTGGTTGGCCTTCTGATGGCAGCGGAAATATCAGCACTCCACAACTCGCAGCCACATATAACAAGAATTTCATGAATCATATCCTTAAAAAGGAAGGGACACCAAGAAGACCTGGTGAAAACATTGAAGGGTTTATTTTTGCCATGTTCAATGAGAACCAGAAACCTAATGGGGAGGACGAAAAACACTATGGTCTTTTTTATCCCAACATGCAACCTGTTTATGATGTATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

251

Amino Acids

27.28

Weight (kDa)

4.93

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 86	5e-11	Glycosyl hydrolases family 17
Glyco_hydro_17	PF00332	117 - 249	6.4e-42	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	486, 489, 506, 540
AcsI	RAATTY	1 cut(s)	583
AfaI	GTAC	1 cut(s)	9
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	3 cut(s)	216, 533, 607
AgsI	TTSAA	2 cut(s)	644, 667
AjnI	CCWGG	2 cut(s)	355, 628
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	3 cut(s)	48, 77, 426
AluI	AGCT	3 cut(s)	48, 77, 426
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	2 cut(s)	64, 524
ApeKI	GCWGC	5 cut(s)	125, 197, 467, 537, 566
ApoI	RAATTY	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	644
AsuII	TTCGAA	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	631
BbvI	GCAGC	5 cut(s)	137, 209, 479, 549, 578
BccI	CCATC	2 cut(s)	466, 527
BceAI	ACGGC	3 cut(s)	51, 175, 251
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	357, 630
BciVI	GTATCC	1 cut(s)	337
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	6 cut(s)	126, 198, 468, 487, 538, 567
BlsI	GCNGC	6 cut(s)	127, 199, 469, 488, 539, 568
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	3 cut(s)	291, 357, 630
BmrFI	CCNGG	3 cut(s)	291, 357, 630
BmsI	GCATC	3 cut(s)	196, 303, 433
BpiI	GAAGAC	1 cut(s)	631
Bpu14I	TTCGAA	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	355, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 533, 607
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	357, 630
BseDI	CCNNGG	2 cut(s)	355, 447
BseLI	CCNNNNNNNGG	3 cut(s)	216, 533, 607
BseMI	GCAATG	1 cut(s)	162
BseXI	GCAGC	5 cut(s)	137, 209, 479, 549, 578
BshFI	GGCC	2 cut(s)	66, 526
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	115, 628
BslI	CCNNNNNNNGG	3 cut(s)	216, 533, 607
BsmFI	GGGAC	2 cut(s)	115, 628
BsnI	GGCC	2 cut(s)	66, 526
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	316
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	4 cut(s)	486, 489, 506, 540
BspANI	GGCC	2 cut(s)	66, 526
BspHI	TCATGA	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	355, 447
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	357, 630
Bst4CI	ACNGT	2 cut(s)	248, 403
Bst6I	CTCTTC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	46, 484
BstDEI	CTNAG	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	447
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 366
BstNI	CCWGG	2 cut(s)	357, 630
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	3 cut(s)	289, 355, 628
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	137, 209, 479, 549, 578
BstV2I	GAAGAC	1 cut(s)	631
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	66, 526
BtgI	CCRYGG	1 cut(s)	447
BtgZI	GCGATG	2 cut(s)	247, 485
BtsI	GCAGTG	2 cut(s)	367, 387
BtsIMutI	CAGTG	2 cut(s)	367, 387
Cac8I	GCNNGC	2 cut(s)	46, 484
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	202
CseI	GACGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	6 cut(s)	59, 194, 448, 589, 661, 727
CviJI	RGCY	9 cut(s)	48, 66, 77, 178, 280, 426, 512, 526, 569
CviKI_1	RGCY	9 cut(s)	48, 66, 77, 178, 280, 426, 512, 526, 569
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	282
Eco47III	AGCGCT	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	355, 628
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	6 cut(s)	62, 197, 451, 592, 664, 730
FaqI	GGGAC	2 cut(s)	115, 628
FatI	CATG	6 cut(s)	58, 193, 447, 588, 660, 726
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	6 cut(s)	126, 198, 468, 487, 538, 567
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	6 cut(s)	126, 198, 468, 487, 538, 567
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	6 cut(s)	126, 198, 468, 487, 538, 567
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	66, 526
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	6 cut(s)	62, 197, 451, 592, 664, 730
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	4 cut(s)	225, 303, 455, 592
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	644
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	5 cut(s)	128, 296, 537, 605, 638
HpyCH4III	ACNGT	2 cut(s)	248, 403
HpyCH4V	TGCA	7 cut(s)	23, 125, 167, 197, 392, 409, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 366
HpyF3I	CTNAG	1 cut(s)	370
Hsp92II	CATG	6 cut(s)	62, 197, 451, 592, 664, 730
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	74, 235, 416
Lsp1109I	GCAGC	5 cut(s)	137, 209, 479, 549, 578
LweI	GCATC	3 cut(s)	196, 303, 433
MabI	ACCWGGT	1 cut(s)	628
MaeIII	GTNAC	2 cut(s)	248, 272
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	172, 636
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	5 cut(s)	171, 256, 344, 383, 583
MnlI	CCTC	1 cut(s)	685
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	540
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	291, 357, 630
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	2 cut(s)	357, 630
MwoI	GCNNNNNNNGC	2 cut(s)	206, 366
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	6 cut(s)	62, 197, 451, 592, 664, 730
NspI	RCATGY	1 cut(s)	730
NspV	TTCGAA	1 cut(s)	183
OliI	CACNNNNGTG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PfeI	GAWTC	4 cut(s)	225, 303, 455, 592
PkrI	GCNGC	6 cut(s)	127, 199, 469, 488, 539, 568
Psp6I	CCWGG	2 cut(s)	355, 628
PspGI	CCWGG	2 cut(s)	355, 628
PstI	CTGCAG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	6 cut(s)	126, 198, 468, 487, 538, 567
Sau3AI	GATC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	3 cut(s)	291, 357, 630
SduI	GDGCHC	1 cut(s)	282
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	3 cut(s)	196, 303, 433
SfcI	CTRYAG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse9I	AATT	5 cut(s)	171, 256, 344, 383, 583
SsiI	CCGC	4 cut(s)	486, 489, 506, 540
StyD4I	CCNGG	3 cut(s)	289, 355, 628
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	248, 403
TaqI	TCGA	4 cut(s)	12, 183, 204, 453
TasI	AATT	5 cut(s)	171, 256, 344, 383, 583
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	4 cut(s)	225, 303, 455, 592
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	367, 394
TseI	GCWGC	5 cut(s)	125, 197, 467, 537, 566
TspDTI	ATGAA	2 cut(s)	577, 605
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	367, 394
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
ZrmI	AGTACT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.