Rorug02G0089200

Belongs to the plant dehydrin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
7136175 .. 7137305
1131 bp
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UTR
Exon/CDS
Intron
Rorug02G0089200.1

Sequence Viewer

Length: 630 bp
ATGATTTTCCCTATCTTTTTCACATTTGTTCTCCTCCTTTCCATTTCCGATGCTGCAGTGCAGGACTTCTGTGTTGCAGACTACAAGGCTCCAGAAGGCCCTGCAGGCTACTCCTGCAAGAAGGCTGCAAAAGTTACCGTAGATGACTTTGTATTCACTGGCCTAGGTGTTGCTGGTAACACCACAAACATTATCAAAGCTGCAGTCACCCCAGCATTTGCTGCTCAATTTCCTGGTGTTAACGGCCTTGGCATTTCGCTGGCTCGTCTAGACCTGGCTCCTGGTGGAGTTATCCCATTTCACACACACCCTGGAGCTTCAGAAGTCTTGATTGTTACGCAAGGAACCATAATTGCCGGGTTCATTTCATCAGCTAACACAGTTTATCTGAAAACCCTTAAGACGGGTGATCTTATGGTGTTCCCTCAAGGGTTATTGCACTTTCAAGTGAATGGAGGTGGTACTTCAGCAATTGCCTTCCCTAGCTTCAGTAGTCCAAGCCCCGGTCTGCAGATTCTGGACTTTGCACTTTTCCAAAACGATTTGCCTACATCATTGGTAGCAATGACTACTTTCCTCGATGTTGCTCAGATCAAGAAACTTAAGGGTGTTCTAGGTGGTACTAATTAA

Protein Analysis

209

Amino Acids

21.7

Weight (kDa)

6.24

Isoelectric Point (pI)

22.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 55 - 198 1.6e-35 Cupin
Cupin_2 PF07883 90 - 155 2.4e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000632)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 303, 450, 472
AfaI GTAC 2 cut(s) 463, 622
AfiI CCNNNNNNNGG 2 cut(s) 403, 503
AflII CTTAAG 2 cut(s) 398, 602
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 4 cut(s) 232, 273, 280, 310
AluBI AGCT 4 cut(s) 200, 317, 374, 486
AluI AGCT 4 cut(s) 200, 317, 374, 486
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 3 cut(s) 97, 160, 244
ApeKI GCWGC 4 cut(s) 53, 125, 200, 221
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspA2I CCTAGG 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 2 cut(s) 358, 504
AsuHPI GGTGA 2 cut(s) 199, 419
AvrII CCTAGG 1 cut(s) 163
BbvI GCAGC 4 cut(s) 40, 112, 187, 208
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 4 cut(s) 234, 275, 282, 312
BcnI CCSGG 2 cut(s) 358, 504
BfaI CTAG 4 cut(s) 164, 269, 483, 614
BfmI CTRYAG 4 cut(s) 54, 102, 201, 509
BfrI CTTAAG 2 cut(s) 398, 602
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 4 cut(s) 54, 126, 201, 222
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 4 cut(s) 55, 127, 202, 223
Bme1390I CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 3 cut(s) 90, 279, 346
BmrFI CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
BmsI GCATC 1 cut(s) 40
BpmI CTGGAG 2 cut(s) 75, 333
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 2 cut(s) 358, 504
BsaJI CCNNGG 4 cut(s) 163, 247, 310, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 503
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 4 cut(s) 234, 275, 282, 312
BseDI CCNNGG 4 cut(s) 163, 247, 310, 502
BseLI CCNNNNNNNGG 2 cut(s) 403, 503
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 4 cut(s) 40, 112, 187, 208
BseYI CCCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 3 cut(s) 99, 162, 246
BsiSI CCGG 2 cut(s) 357, 504
BslI CCNNNNNNNGG 2 cut(s) 403, 503
BsnI GGCC 3 cut(s) 99, 162, 246
Bsp143I GATC 2 cut(s) 409, 591
BspANI GGCC 3 cut(s) 99, 162, 246
BspCNI CTCAG 1 cut(s) 601
BspLI GGNNCC 3 cut(s) 90, 279, 346
BspMAI CTGCAG 4 cut(s) 58, 106, 205, 513
BspTI CTTAAG 2 cut(s) 398, 602
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 4 cut(s) 163, 247, 310, 502
BssMI GATC 2 cut(s) 409, 591
BssT1I CCWWGG 2 cut(s) 163, 247
Bst2UI CCWGG 4 cut(s) 234, 275, 282, 312
Bst4CI ACNGT 2 cut(s) 139, 382
BstAFI CTTAAG 2 cut(s) 398, 602
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 106, 261
BstDEI CTNAG 1 cut(s) 588
BstKTI GATC 2 cut(s) 412, 594
BstMBI GATC 2 cut(s) 409, 591
BstMWI GCNNNNNNNGC 3 cut(s) 105, 114, 221
BstNI CCWGG 4 cut(s) 234, 275, 282, 312
BstSCI CCNGG 6 cut(s) 232, 273, 280, 310, 356, 502
BstSFI CTRYAG 4 cut(s) 54, 102, 201, 509
BstV1I GCAGC 4 cut(s) 40, 112, 187, 208
BsuRI GGCC 3 cut(s) 99, 162, 246
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 156
Cac8I GCNNGC 2 cut(s) 106, 261
CaiI CAGNNNCTG 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 462, 621
CviQI GTAC 2 cut(s) 462, 621
DdeI CTNAG 1 cut(s) 588
DpnI GATC 2 cut(s) 411, 593
DpnII GATC 2 cut(s) 409, 591
Eco130I CCWWGG 2 cut(s) 163, 247
Eco57I CTGAAG 3 cut(s) 303, 450, 472
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 4 cut(s) 232, 273, 280, 310
EcoT14I CCWWGG 2 cut(s) 163, 247
ErhI CCWWGG 2 cut(s) 163, 247
FaiI YATR 2 cut(s) 350, 416
Fnu4HI GCNGC 4 cut(s) 54, 126, 201, 222
Fsp4HI GCNGC 4 cut(s) 54, 126, 201, 222
FspBI CTAG 4 cut(s) 164, 269, 483, 614
GluI GCNGC 4 cut(s) 54, 126, 201, 222
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 2 cut(s) 75, 333
HaeIII GGCC 3 cut(s) 99, 162, 246
HapII CCGG 2 cut(s) 357, 504
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 514
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 2 cut(s) 357, 504
HphI GGTGA 2 cut(s) 199, 419
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 4 cut(s) 49, 322, 390, 591
Hpy188III TCNNGA 5 cut(s) 92, 269, 328, 518, 595
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 89, 115, 487
HpyCH4III ACNGT 2 cut(s) 139, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 114, 221
HpyF3I CTNAG 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 409, 591
LmnI GCTCC 3 cut(s) 94, 283, 314
Lsp1109I GCAGC 4 cut(s) 40, 112, 187, 208
LweI GCATC 1 cut(s) 40
MaeI CTAG 4 cut(s) 164, 269, 483, 614
MaeIII GTNAC 4 cut(s) 133, 176, 205, 334
MalI GATC 2 cut(s) 411, 593
MboI GATC 2 cut(s) 409, 591
MfeI CAATTG 1 cut(s) 471
MluCI AATT 4 cut(s) 227, 351, 471, 625
MnlI CCTC 4 cut(s) 44, 435, 449, 587
MseI TTAA 4 cut(s) 240, 399, 603, 628
MspCI CTTAAG 2 cut(s) 398, 602
MspI CCGG 2 cut(s) 357, 504
MspR9I CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 4 cut(s) 234, 275, 282, 312
MwoI GCNNNNNNNGC 3 cut(s) 105, 114, 221
NciI CCSGG 2 cut(s) 358, 504
NdeII GATC 2 cut(s) 409, 591
NlaIV GGNNCC 3 cut(s) 90, 279, 346
NmuCI GTSAC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 4 cut(s) 55, 127, 202, 223
Psp6I CCWGG 4 cut(s) 232, 273, 280, 310
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 4 cut(s) 232, 273, 280, 310
PspN4I GGNNCC 3 cut(s) 90, 279, 346
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 4 cut(s) 58, 106, 205, 513
PstNI CAGNNNCTG 1 cut(s) 517
RsaI GTAC 2 cut(s) 463, 622
RsaNI GTAC 2 cut(s) 462, 621
SaqAI TTAA 4 cut(s) 240, 399, 603, 628
SatI GCNGC 4 cut(s) 54, 126, 201, 222
Sau3AI GATC 2 cut(s) 409, 591
Sau96I GGNCC 1 cut(s) 98
SbfI CCTGCAGG 1 cut(s) 106
ScrFI CCNGG 6 cut(s) 234, 275, 282, 312, 358, 504
SdaI CCTGCAGG 1 cut(s) 106
SetI ASST 8 cut(s) 169, 202, 276, 319, 376, 460, 488, 619
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 4 cut(s) 54, 102, 201, 509
SmlI CTYRAG 3 cut(s) 398, 426, 602
SmoI CTYRAG 3 cut(s) 398, 426, 602
Sse8387I CCTGCAGG 1 cut(s) 106
Sse9I AATT 4 cut(s) 227, 351, 471, 625
SspMI CTAG 4 cut(s) 164, 269, 483, 614
StyD4I CCNGG 6 cut(s) 232, 273, 280, 310, 356, 502
StyI CCWWGG 2 cut(s) 163, 247
TaaI ACNGT 2 cut(s) 139, 382
TaqI TCGA 1 cut(s) 579
TasI AATT 4 cut(s) 227, 351, 471, 625
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 4 cut(s) 240, 399, 603, 628
Tru9I TTAA 4 cut(s) 240, 399, 603, 628
TscAI CASTG 2 cut(s) 63, 163
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 53, 125, 200, 221
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 352, 357
TspRI CASTG 2 cut(s) 63, 163
Vha464I CTTAAG 2 cut(s) 398, 602
XbaI TCTAGA 1 cut(s) 268
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 4 cut(s) 164, 269, 483, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.