Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

80325175 .. 80333086

Gene Structure 7912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCGCATTACCAGAGCGAGTACGGCAGGGACAAGACCACCGACGAGTTCGGAAACCCGATCCGCCGGACTGAGGACCCGGTTCACCATGGTGTAACTGAAGCAGCCACCGGGTACGGCACTCATGACACTAGAACAGGGTACGGAACTCATGACACCACCGGAACGGGGTACGGGACTCATAGCACAACTGGTACAGGCTACGGAACTCATGGCACCGCCACTGGTCCCACTGGCTTCCCTGCAACAACGGCGGGCGGTCACGGCGTCCCGCTTCACCGCTCTAACAGCTCAAGTTGTTCTGAGGATGATGGGTACAGCGGGAGGAGGAAGAAGAAGGGCTTTAAGGAGAAGATCAAGGAGAAGCTGCCAGGCGGCAACAGTGACCATAGCGGCACAACTAATACGCCACCGTTTGATACCAGAGCCCATAAGAAGAAGGGCATGATGGACAAGATCAAAGAGAAGCTTCCCGGTCACCATTATACATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

165

Amino Acids

17.71

Weight (kDa)

9.0

Isoelectric Point (pI)

23.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	13 - 161	1.2e-29	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	282
AciI	CCGC	9 cut(s)	64, 219, 254, 258, 272, 280, 321, 375, 393
AclWI	GGATC	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	6 cut(s)	23, 116, 143, 173, 196, 317
AfiI	CCNNNNNNNGG	2 cut(s)	73, 168
AjnI	CCWGG	1 cut(s)	370
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	291, 367, 469
AluI	AGCT	3 cut(s)	291, 367, 469
AlwI	GGATC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	104, 367
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	76, 227
AsuC2I	CCSGG	3 cut(s)	80, 112, 474
AsuHPI	GGTGA	3 cut(s)	77, 269, 470
AvaII	GGWCC	2 cut(s)	76, 227
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	116, 354
BccI	CCATC	2 cut(s)	305, 442
BceAI	ACGGC	4 cut(s)	40, 133, 267, 280
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	3 cut(s)	80, 112, 474
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	4 cut(s)	105, 368, 376, 394
BlsI	GCNGC	4 cut(s)	106, 369, 377, 395
Bme1390I	CCNGG	4 cut(s)	80, 112, 372, 474
Bme18I	GGWCC	2 cut(s)	76, 227
BmgT120I	GGNCC	2 cut(s)	76, 227
BmiI	GGNNCC	3 cut(s)	78, 217, 229
BmrFI	CCNGG	4 cut(s)	80, 112, 372, 474
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	3 cut(s)	80, 112, 474
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 168
Bse1I	ACTGG	3 cut(s)	196, 229, 238
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	73, 168
BseMII	CTCAG	2 cut(s)	63, 294
BseNI	ACTGG	3 cut(s)	196, 229, 238
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	116, 354
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	5 cut(s)	67, 80, 111, 162, 474
BslFI	GGGAC	4 cut(s)	44, 190, 213, 254
BslI	CCNNNNNNNGG	2 cut(s)	73, 168
BsmFI	GGGAC	4 cut(s)	44, 190, 213, 254
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	60, 354, 456
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	9 cut(s)	64, 219, 254, 258, 272, 280, 321, 375, 393
BspCNI	CTCAG	2 cut(s)	64, 295
BspHI	TCATGA	2 cut(s)	124, 151
BspLI	GGNNCC	3 cut(s)	78, 217, 229
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	196, 229, 238
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	60, 354, 456
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	383, 414
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	72, 303
BstDSI	CCRYGG	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	63, 357, 459
BstMBI	GATC	3 cut(s)	60, 354, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 251, 264, 288
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	492
BstPI	GGTNACC	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	78, 110, 370, 472
BstV1I	GCAGC	2 cut(s)	116, 354
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	3 cut(s)	222, 231, 388
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	2 cut(s)	124, 151
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	76, 227
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	6 cut(s)	22, 115, 142, 172, 195, 316
CviAII	CATG	6 cut(s)	89, 125, 152, 212, 445, 489
CviJI	RGCY	8 cut(s)	107, 201, 237, 291, 342, 367, 428, 469
CviKI_1	RGCY	8 cut(s)	107, 201, 237, 291, 342, 367, 428, 469
CviQI	GTAC	6 cut(s)	22, 115, 142, 172, 195, 316
DdeI	CTNAG	2 cut(s)	72, 303
DpnI	GATC	3 cut(s)	62, 356, 458
DpnII	GATC	3 cut(s)	60, 354, 456
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	76, 227
Eco57I	CTGAAG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	6 cut(s)	92, 128, 155, 215, 448, 492
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 453, 485
FaqI	GGGAC	4 cut(s)	44, 190, 213, 254
FatI	CATG	6 cut(s)	88, 124, 151, 211, 444, 488
FauI	CCCGC	3 cut(s)	247, 279, 314
Fnu4HI	GCNGC	4 cut(s)	105, 368, 376, 394
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	4 cut(s)	105, 368, 376, 394
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	105, 368, 376, 394
HapII	CCGG	5 cut(s)	67, 80, 111, 162, 474
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	6 cut(s)	92, 128, 155, 215, 448, 492
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	5 cut(s)	67, 80, 111, 162, 474
HphI	GGTGA	3 cut(s)	77, 269, 470
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	53, 304
Hpy188III	TCNNGA	2 cut(s)	125, 152
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	331, 433
HpyCH4III	ACNGT	2 cut(s)	383, 414
HpyCH4V	TGCA	2 cut(s)	245, 492
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 251, 264, 288
HpyF3I	CTNAG	2 cut(s)	72, 303
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	6 cut(s)	92, 128, 155, 215, 448, 492
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	60, 354, 456
Lsp1109I	GCAGC	2 cut(s)	116, 354
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	4 cut(s)	94, 260, 383, 476
MalI	GATC	3 cut(s)	62, 356, 458
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	3 cut(s)	60, 354, 456
MboII	GAAGA	4 cut(s)	343, 346, 364, 448
MhlI	GDGCHC	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	67, 298, 318, 321
Mph1103I	ATGCAT	1 cut(s)	494
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	5 cut(s)	67, 80, 111, 162, 474
MspR9I	CCNGG	4 cut(s)	80, 112, 372, 474
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	24, 251, 264, 288
NciI	CCSGG	3 cut(s)	80, 112, 474
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	3 cut(s)	60, 354, 456
NlaIII	CATG	6 cut(s)	92, 128, 155, 215, 448, 492
NlaIV	GGNNCC	3 cut(s)	78, 217, 229
NmuCI	GTSAC	3 cut(s)	260, 383, 476
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	1 cut(s)	492
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	2 cut(s)	124, 151
PkrI	GCNGC	4 cut(s)	106, 369, 377, 395
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	370
PspEI	GGTNACC	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	78, 217, 229
PspPI	GGNCC	2 cut(s)	76, 227
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	6 cut(s)	23, 116, 143, 173, 196, 317
RsaNI	GTAC	6 cut(s)	22, 115, 142, 172, 195, 316
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	105, 368, 376, 394
Sau3AI	GATC	3 cut(s)	60, 354, 456
Sau96I	GGNCC	2 cut(s)	76, 227
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	4 cut(s)	80, 112, 372, 474
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	3 cut(s)	293, 369, 471
SinI	GGWCC	2 cut(s)	76, 227
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
SsiI	CCGC	9 cut(s)	64, 219, 254, 258, 272, 280, 321, 375, 393
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	4 cut(s)	78, 110, 370, 472
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	383, 414
TauI	GCSGC	2 cut(s)	378, 396
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	3 cut(s)	229, 238, 388
TseFI	GTSAC	3 cut(s)	260, 383, 476
TseI	GCWGC	2 cut(s)	104, 367
Tsp45I	GTSAC	3 cut(s)	260, 383, 476
TspGWI	ACGGA	2 cut(s)	159, 219
TspRI	CASTG	3 cut(s)	229, 238, 388
VpaK11BI	GGWCC	2 cut(s)	76, 227
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.