Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

12129806 .. 12130346

Gene Structure 541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG141400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCGCATTACCAGAGTCAGTACAGCAGAGACAAGACCACTGACGAGTTCGGAAACCTGATCCGCGGGACTGAAGACCCGGTTCACCACGGTGTAACTGAAGCAACCGGCGGGTACGGCACTCATGACACTAGATCAAACAAGTCTGAGGATGATGGGTACGGCGGGAGGAGGAAGAAGAAGGGTTTGAAGGAGAAGATCAAGAAGAAGCTGCCAGGCGGCAACAGTGACCATAGCGGCACAACTAATACGCCACCATGTGATACCAGAGCCCATGAGAAGAAGGGCATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

109

Amino Acids

12.1

Weight (kDa)

9.33

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	45 - 109	3.9e-21	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AciI	CCGC	6 cut(s)	64, 66, 111, 165, 219, 237
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	319
AcuI	CTGAAG	2 cut(s)	93, 120
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	3 cut(s)	23, 116, 161
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	214
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	2 cut(s)	211, 313
AluI	AGCT	2 cut(s)	211, 313
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	2 cut(s)	80, 318
AsuHPI	GGTGA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	2 cut(s)	149, 286
BceAI	ACGGC	2 cut(s)	133, 178
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	2 cut(s)	80, 318
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	212, 220, 238
BlsI	GCNGC	3 cut(s)	213, 221, 239
Bme1390I	CCNGG	3 cut(s)	80, 216, 318
BmrFI	CCNGG	3 cut(s)	80, 216, 318
BpiI	GAAGAC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	80, 318
BsaJI	CCNNGG	2 cut(s)	64, 88
Bse118I	RCCGGY	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	64, 88
BseGI	GGATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	80, 108, 318
BslFI	GGGAC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	60, 134, 198, 300
BspACI	CCGC	6 cut(s)	64, 66, 111, 165, 219, 237
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	124
BspPI	GGATC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	64, 88
BssMI	GATC	4 cut(s)	60, 134, 198, 300
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	92, 227
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	2 cut(s)	64, 88
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	63, 137, 201, 303
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	4 cut(s)	60, 134, 198, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	78, 214, 316
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	321
BtgI	CCRYGG	2 cut(s)	64, 88
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	39, 232
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	107
Cfr42I	CCGCGG	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	22, 115, 160
CviAII	CATG	4 cut(s)	125, 258, 275, 289
CviJI	RGCY	4 cut(s)	211, 272, 313, 321
CviKI_1	RGCY	4 cut(s)	211, 272, 313, 321
CviQI	GTAC	3 cut(s)	22, 115, 160
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	4 cut(s)	62, 136, 200, 302
DpnII	GATC	4 cut(s)	60, 134, 198, 300
DraIII	CACNNNGTG	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	274
Eco57I	CTGAAG	2 cut(s)	93, 120
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	274
FaeI	CATG	4 cut(s)	128, 261, 278, 292
FaiI	YATR	5 cut(s)	126, 234, 259, 276, 290
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	4 cut(s)	124, 257, 274, 288
FauI	CCCGC	3 cut(s)	59, 104, 158
Fnu4HI	GCNGC	3 cut(s)	212, 220, 238
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	212, 220, 238
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	212, 220, 238
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	3 cut(s)	80, 108, 318
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	128, 261, 278, 292
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	80, 108, 318
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	53, 148
Hpy188III	TCNNGA	2 cut(s)	125, 202
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	175, 184, 277
HpyCH4III	ACNGT	2 cut(s)	92, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	128, 261, 278, 292
HspAI	GCGC	1 cut(s)	5
KspI	CCGCGG	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	60, 134, 198, 300
LpnPI	CCDG	7 cut(s)	26, 71, 93, 121, 201, 228, 280
Lsp1109I	GCAGC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	94, 227
MalI	GATC	4 cut(s)	62, 136, 200, 302
MboI	GATC	4 cut(s)	60, 134, 198, 300
MboII	GAAGA	6 cut(s)	86, 187, 190, 208, 217, 292
MhlI	GDGCHC	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	3 cut(s)	142, 162, 165
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	3 cut(s)	80, 108, 318
MspR9I	CCNGG	3 cut(s)	80, 216, 318
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	80, 318
NdeII	GATC	4 cut(s)	60, 134, 198, 300
NlaIII	CATG	4 cut(s)	128, 261, 278, 292
NmuCI	GTSAC	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	213, 221, 239
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
RsaI	GTAC	3 cut(s)	23, 116, 161
RsaNI	GTAC	3 cut(s)	22, 115, 160
RseI	CAYNNNNRTG	1 cut(s)	90
SacII	CCGCGG	1 cut(s)	67
SatI	GCNGC	3 cut(s)	212, 220, 238
Sau3AI	GATC	4 cut(s)	60, 134, 198, 300
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	80, 216, 318
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	3 cut(s)	60, 213, 315
Sfr303I	CCGCGG	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	90
SsiI	CCGC	6 cut(s)	64, 66, 111, 165, 219, 237
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	78, 214, 316
TaaI	ACNGT	2 cut(s)	92, 227
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	2 cut(s)	222, 240
TscAI	CASTG	2 cut(s)	46, 232
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	227
TspRI	CASTG	2 cut(s)	46, 232
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.