Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11654606 .. 11656894

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1139800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAATCCCATGGATTTCTAGGCGTGAAATTGGTGAGACCTATCCTAAGGACGAGTGCCATCAATCGAGGCTCGAGGGCTACGACCCTTCGACATATCAATGAGTGCTCAACTACAACTGACACAACATACGGCACCACCGACCCAGGAGGGCACCACCAGGAAAAAGGGATGACGGACAAGATCGAGGACAAGCTGCCGAGTACTGGCCACAAGGATAACCCCCACTACTCACATACTACTACGTCGACCACCACACCATCCGGCGGCGGCACCGCTTACACGGAGGAGAACCACGAAAAGAAAGGGATCATGGACAAGATCATAGAGAAGCTTCGTGGCGGACACCACAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

120

Amino Acids

13.05

Weight (kDa)

9.3

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	50 - 116	7.8e-14	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	134, 153, 272
AccI	GTMKAC	1 cut(s)	248
AciI	CCGC	4 cut(s)	267, 270, 276, 342
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	208
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	206, 266
AjnI	CCWGG	2 cut(s)	145, 159
AluBI	AGCT	2 cut(s)	196, 334
AluI	AGCT	2 cut(s)	196, 334
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	3 cut(s)	134, 153, 272
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	68, 268
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	147, 161
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	3 cut(s)	197, 268, 271
BlsI	GCNGC	3 cut(s)	198, 269, 272
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	2 cut(s)	147, 161
BmeT110I	CYCGRG	1 cut(s)	73
BmiI	GGNNCC	3 cut(s)	136, 155, 274
BmrFI	CCNGG	2 cut(s)	147, 161
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	10, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 266
Bse1I	ACTGG	1 cut(s)	211
Bse21I	CCTNAGG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	147, 161
BseDI	CCNNGG	2 cut(s)	10, 145
BseGI	GGATG	2 cut(s)	177, 260
BseLI	CCNNNNNNNGG	2 cut(s)	206, 266
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	3 cut(s)	134, 153, 272
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	206, 266
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	110, 156
Bsp143I	GATC	3 cut(s)	183, 309, 321
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	4 cut(s)	267, 270, 276, 342
BspANI	GGCC	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	136, 155, 274
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	3 cut(s)	134, 153, 272
BspTNI	GGTCTC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	10, 145
BssMI	GATC	3 cut(s)	183, 309, 321
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	147, 161
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	177, 260
BstKTI	GATC	3 cut(s)	186, 312, 324
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	183, 309, 321
BstNI	CCWGG	2 cut(s)	147, 161
BstSCI	CCNGG	2 cut(s)	145, 159
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	177, 260
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	11, 313
CviJI	RGCY	5 cut(s)	72, 80, 196, 210, 334
CviKI_1	RGCY	5 cut(s)	72, 80, 196, 210, 334
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	185, 311, 323
DpnII	GATC	3 cut(s)	183, 309, 321
EaeI	YGGCCR	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	145, 159
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	2 cut(s)	14, 316
FaiI	YATR	7 cut(s)	12, 96, 130, 237, 314, 326, 358
FatI	CATG	2 cut(s)	10, 312
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	197, 268, 271
FokI	GGATG	2 cut(s)	184, 247
Fsp4HI	GCNGC	3 cut(s)	197, 268, 271
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	3 cut(s)	197, 268, 271
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	2 cut(s)	14, 316
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	332
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	249
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	14, 316
Kzo9I	GATC	3 cut(s)	183, 309, 321
LpnPI	CCDG	6 cut(s)	132, 146, 159, 173, 192, 277
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	245
MalI	GATC	3 cut(s)	185, 311, 323
MboI	GATC	3 cut(s)	183, 309, 321
MhlI	GDGCHC	2 cut(s)	110, 156
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	210
MnlI	CCTC	5 cut(s)	62, 69, 143, 181, 280
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	147, 161
MvaI	CCWGG	2 cut(s)	147, 161
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	183, 309, 321
NlaIII	CATG	2 cut(s)	14, 316
NlaIV	GGNNCC	3 cut(s)	136, 155, 274
NmeAIII	GCCGAG	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 138
PkrI	GCNGC	3 cut(s)	198, 269, 272
Psp6I	CCWGG	2 cut(s)	145, 159
PspGI	CCWGG	2 cut(s)	145, 159
PspN4I	GGNNCC	3 cut(s)	136, 155, 274
PspXI	VCTCGAGB	1 cut(s)	73
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	247
SatI	GCNGC	3 cut(s)	197, 268, 271
Sau3AI	GATC	3 cut(s)	183, 309, 321
ScaI	AGTACT	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	147, 161
SduI	GDGCHC	2 cut(s)	110, 156
SetI	ASST	4 cut(s)	43, 198, 248, 336
Sfr274I	CTCGAG	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	4 cut(s)	267, 270, 276, 342
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	145, 159
StyI	CCWWGG	1 cut(s)	10
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	5 cut(s)	67, 74, 91, 186, 248
TasI	AATT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	203
TauI	GCSGC	2 cut(s)	270, 273
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	191, 299
XhoI	CTCGAG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.