Rorug02G0088900

Belongs to the plant dehydrin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
7103475 .. 7103792
318 bp
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UTR
Exon/CDS
Intron
Rorug02G0088900.1

Sequence Viewer

Length: 318 bp
ATGACTTTGGCCGGTCACCACATCATCATTCCCTCACTTTGCCCGGGCAAAGTCATACCGGTGGACTTGCTCTTAGCTCTTACTCAAAGCACTGGTGAGAGTAATATTGCTGGGGCTACTGGCACTAGCAGCAGGGAGATACATGCTGGTAAATTATCGGGAATTGATCCTCCTTATTATAAAGGCACAAAAATTCATGTTTGTGATCCAAAATGTAATCCACAAGGAGGTTGCTTCTGGTGCTGCTATCTCCCGGACAAGGTAGGCTGCTTTAATACTGAAAAGGAGTGTAATTACGGTTGTCGTCCTGATAATTAG

Protein Analysis

105

Amino Acids

11.24

Weight (kDa)

6.86

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000632)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AclWI GGATC 2 cut(s) 161, 200
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 227, 259
AgeI ACCGGT 1 cut(s) 58
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AlwI GGATC 2 cut(s) 161, 200
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 129, 243, 267
ApoI RAATTY 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 58
AsuC2I CCSGG 3 cut(s) 44, 45, 254
AsuHPI GGTGA 2 cut(s) 8, 107
AvaI CYCGRG 1 cut(s) 43
BbvI GCAGC 3 cut(s) 141, 230, 254
BcnI CCSGG 3 cut(s) 44, 45, 254
BfaI CTAG 1 cut(s) 126
BisI GCNGC 3 cut(s) 130, 244, 268
BlsI GCNGC 3 cut(s) 131, 245, 269
Bme1390I CCNGG 3 cut(s) 44, 45, 254
BmeT110I CYCGRG 1 cut(s) 43
BmrFI CCNGG 3 cut(s) 44, 45, 254
BpuMI CCSGG 3 cut(s) 44, 45, 254
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 259
Bse118I RCCGGY 2 cut(s) 11, 58
Bse1I ACTGG 2 cut(s) 97, 124
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 227, 259
BseNI ACTGG 2 cut(s) 97, 124
BseXI GCAGC 3 cut(s) 141, 230, 254
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 11
BshTI ACCGGT 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 4 cut(s) 12, 44, 59, 254
BslI CCNNNNNNNGG 2 cut(s) 227, 259
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 2 cut(s) 166, 205
BspANI GGCC 1 cut(s) 11
BspPI GGATC 2 cut(s) 161, 200
BsrFI RCCGGY 2 cut(s) 11, 58
BsrI ACTGG 2 cut(s) 97, 124
BssAI RCCGGY 2 cut(s) 11, 58
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 2 cut(s) 166, 205
Bst4CI ACNGT 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 14
BstKTI GATC 2 cut(s) 169, 208
BstMBI GATC 2 cut(s) 166, 205
BstMWI GCNNNNNNNGC 2 cut(s) 129, 240
BstNSI RCATGY 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 3 cut(s) 42, 43, 252
BstV1I GCAGC 3 cut(s) 141, 230, 254
BsuRI GGCC 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 90
Cfr10I RCCGGY 2 cut(s) 11, 58
Cfr9I CCCGGG 1 cut(s) 43
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 2 cut(s) 143, 197
CviJI RGCY 4 cut(s) 11, 77, 116, 267
CviKI_1 RGCY 4 cut(s) 11, 77, 116, 267
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 168, 207
DpnII GATC 2 cut(s) 166, 205
EaeI YGGCCR 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 14
EcoO65I GGTNACC 1 cut(s) 14
FaeI CATG 2 cut(s) 146, 200
FaiI YATR 4 cut(s) 56, 144, 180, 198
FatI CATG 2 cut(s) 142, 196
Fnu4HI GCNGC 3 cut(s) 130, 244, 268
Fsp4HI GCNGC 3 cut(s) 130, 244, 268
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 130, 244, 268
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 11
HapII CCGG 4 cut(s) 12, 44, 59, 254
Hin1II CATG 2 cut(s) 146, 200
HpaII CCGG 4 cut(s) 12, 44, 59, 254
HphI GGTGA 2 cut(s) 8, 107
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 159, 308
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 240
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 2 cut(s) 146, 200
Kzo9I GATC 2 cut(s) 166, 205
Lsp1109I GCAGC 3 cut(s) 141, 230, 254
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 168, 207
MboI GATC 2 cut(s) 166, 205
MluCI AATT 5 cut(s) 152, 162, 192, 292, 313
MnlI CCTC 3 cut(s) 43, 180, 221
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 59, 201
MspI CCGG 4 cut(s) 12, 44, 59, 254
MspR9I CCNGG 3 cut(s) 44, 45, 254
MwoI GCNNNNNNNGC 2 cut(s) 129, 240
NciI CCSGG 3 cut(s) 44, 45, 254
NdeII GATC 2 cut(s) 166, 205
NlaIII CATG 2 cut(s) 146, 200
NmuCI GTSAC 1 cut(s) 14
NspI RCATGY 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 252
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 3 cut(s) 131, 245, 269
PsiI TTATAA 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 59, 201
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 3 cut(s) 130, 244, 268
Sau3AI GATC 2 cut(s) 166, 205
ScrFI CCNGG 3 cut(s) 44, 45, 254
SetI ASST 3 cut(s) 79, 232, 264
SmaI CCCGGG 1 cut(s) 45
SmiMI CAYNNNNRTG 2 cut(s) 59, 201
SrfI GCCCGGGC 1 cut(s) 45
Sse9I AATT 5 cut(s) 152, 162, 192, 292, 313
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 42, 43, 252
TaaI ACNGT 1 cut(s) 299
TasI AATT 5 cut(s) 152, 162, 192, 292, 313
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 3 cut(s) 129, 243, 267
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 185
TspMI CCCGGG 1 cut(s) 43
TspRI CASTG 1 cut(s) 97
XapI RAATTY 1 cut(s) 192
XceI RCATGY 1 cut(s) 146
XmaI CCCGGG 1 cut(s) 43
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.