Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11772583 .. 11773520

Gene Structure 938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016980

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGCATTACCAGAGCGAGTACGGTAGAGACAAGACCACCGACGAGATCCGCCGGAGTGAGGACCCGGTTAACCATGGTTTAACTGAAGCAACCACCGGGTACGGCATTCATGACACTAAAACAGGCTACGGAACTCAGGACACGAACGGAACGGGGCACGGGACTCATGGTACAACTGGTACAACTGGTACAGGCTACGGAACTCATGGCACGGCCACTGGGCCCACTGGCTTCGCTGCAACAACGGCCGGTGGTCACGGGTTCCCAAATCACCGGTCTGACATCTCAAGCTCTTCTGAGGATGATGGGTACGGAGGGAGGAGGGAGAGGAAGGGTTTGCAGGAGAAGATGCCAGGTGGCACACACCGGTCCAACGACCCCTACGGTACGACCCCGATTACCACACCTTATGGTGGACAGCACCAGGATAAGGGAGTGGTGGACAAACTCAAAGAGAAGCTCCCAGGAGGTCACAAGGACGATCCCCACAGTACAACTCATACCACTACTACACCAGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGAGTGGTGGATAAGATCAAAGAGAAGCTACCAGTACTACTGAGTACTGACACCACTACTACACCGGGTGGCGTGGCGGGAGAGCACCATGAGAATAAGGGCTTGAAGGAGAAGATTGAGAAGCTGCCAGGCGGCAACAGTGACCATAGCGGCACTACTAATACGCCACCTTTTGATACCAGAGCCCATGAGAAGAAGGGAATGATGGACAAGATTAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

266

Amino Acids

28.21

Weight (kDa)

6.48

Isoelectric Point (pI)

23.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	33 - 159	2.5e-14	Dehydrin
Dehydrin	PF00257	139 - 196	6.9e-14	Dehydrin
Dehydrin	PF00257	216 - 265	3.9e-11	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	52, 632, 687, 705
AclWI	GGATC	2 cut(s)	43, 479
AcoI	YGGCCR	4 cut(s)	216, 249, 531, 787
AcuI	CTGAAG	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	623
AfiI	CCNNNNNNNGG	4 cut(s)	61, 416, 433, 524
AgeI	ACCGGT	2 cut(s)	276, 369
AgsI	TTSAA	1 cut(s)	661
AjnI	CCWGG	5 cut(s)	355, 426, 466, 517, 682
AluBI	AGCT	5 cut(s)	294, 463, 583, 679, 781
AluI	AGCT	5 cut(s)	294, 463, 583, 679, 781
Alw21I	GWGCWC	2 cut(s)	543, 642
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	43, 479
AoxI	GGCC	5 cut(s)	216, 224, 249, 531, 787
ApaI	GGGCCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	239, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AsiGI	ACCGGT	2 cut(s)	276, 369
AspS9I	GGNCC	4 cut(s)	64, 224, 225, 372
AsuC2I	CCSGG	4 cut(s)	68, 100, 621, 786
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	64, 372
BaeGI	GKGCMC	2 cut(s)	162, 228
BanII	GRGCYC	2 cut(s)	228, 742
Bbv12I	GWGCWC	2 cut(s)	543, 642
BbvI	GCAGC	2 cut(s)	226, 666
BccI	CCATC	2 cut(s)	302, 754
BceAI	ACGGC	4 cut(s)	121, 231, 264, 541
BciT130I	CCWGG	5 cut(s)	357, 428, 468, 519, 684
BcnI	CCSGG	4 cut(s)	68, 100, 621, 786
BcoDI	GTCTC	1 cut(s)	24
BisI	GCNGC	4 cut(s)	240, 680, 688, 706
BlsI	GCNGC	4 cut(s)	241, 681, 689, 707
BmcAI	AGTACT	2 cut(s)	591, 601
Bme1390I	CCNGG	9 cut(s)	68, 100, 357, 428, 468, 519, 621, 684, 786
Bme18I	GGWCC	2 cut(s)	64, 372
BmgT120I	GGNCC	4 cut(s)	64, 224, 225, 372
BmiI	GGNNCC	3 cut(s)	66, 226, 266
BmrFI	CCNGG	9 cut(s)	68, 100, 357, 428, 468, 519, 621, 684, 786
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	274
BpuMI	CCSGG	4 cut(s)	68, 100, 621, 786
BsaJI	CCNNGG	2 cut(s)	76, 466
BsaWI	WCCGGW	2 cut(s)	276, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 416, 433, 524
Bse118I	RCCGGY	3 cut(s)	251, 276, 369
Bse1I	ACTGG	5 cut(s)	184, 193, 226, 235, 587
BseBI	CCWGG	5 cut(s)	357, 428, 468, 519, 684
BseDI	CCNNGG	2 cut(s)	76, 466
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	61, 416, 433, 524
BseMII	CTCAG	3 cut(s)	152, 291, 587
BseNI	ACTGG	5 cut(s)	184, 193, 226, 235, 587
BseRI	GAGGAG	1 cut(s)	337
BseSI	GKGCMC	2 cut(s)	162, 228
BseX3I	CGGCCG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	226, 666
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	5 cut(s)	218, 226, 251, 533, 789
BshTI	ACCGGT	2 cut(s)	276, 369
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	2 cut(s)	543, 642
BsiSI	CCGG	9 cut(s)	55, 68, 99, 252, 277, 370, 534, 620, 786
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	4 cut(s)	61, 416, 433, 524
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	5 cut(s)	218, 226, 251, 533, 789
Bsp120I	GGGCCC	1 cut(s)	224
Bsp1286I	GDGCHC	5 cut(s)	162, 228, 543, 642, 742
Bsp143I	GATC	3 cut(s)	48, 484, 570
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	4 cut(s)	52, 632, 687, 705
BspANI	GGCC	5 cut(s)	218, 226, 251, 533, 789
BspCNI	CTCAG	3 cut(s)	151, 292, 588
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	66, 226, 266
BspPI	GGATC	2 cut(s)	43, 479
BspQI	GCTCTTC	1 cut(s)	301
BsrFI	RCCGGY	3 cut(s)	251, 276, 369
BsrI	ACTGG	5 cut(s)	184, 193, 226, 235, 587
BssAI	RCCGGY	3 cut(s)	251, 276, 369
BssECI	CCNNGG	2 cut(s)	76, 466
BssMI	GATC	3 cut(s)	48, 484, 570
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	5 cut(s)	357, 428, 468, 519, 684
Bst4CI	ACNGT	4 cut(s)	26, 389, 494, 695
Bst6I	CTCTTC	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	138, 300, 596
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	51, 487, 573
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	48, 484, 570
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	5 cut(s)	357, 428, 468, 519, 684
BstSCI	CCNGG	9 cut(s)	66, 98, 355, 426, 466, 517, 619, 682, 784
BstSLI	GKGCMC	2 cut(s)	162, 228
BstV1I	GCAGC	2 cut(s)	226, 666
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	5 cut(s)	218, 226, 251, 533, 789
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	3 cut(s)	219, 228, 700
CciI	TCATGA	1 cut(s)	112
Cfr10I	RCCGGY	3 cut(s)	251, 276, 369
Cfr13I	GGNCC	4 cut(s)	64, 224, 225, 372
CsiI	ACCWGGT	1 cut(s)	517
CspAI	ACCGGT	2 cut(s)	276, 369
CviAII	CATG	7 cut(s)	77, 113, 170, 209, 545, 644, 743
DdeI	CTNAG	3 cut(s)	138, 300, 596
DpnI	GATC	3 cut(s)	50, 486, 572
DpnII	GATC	3 cut(s)	48, 484, 570
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	4 cut(s)	216, 249, 531, 787
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	228, 742
Eco47I	GGWCC	2 cut(s)	64, 372
Eco52I	CGGCCG	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	5 cut(s)	355, 426, 466, 517, 682
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	228, 742
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	7 cut(s)	80, 116, 173, 212, 548, 647, 746
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	7 cut(s)	76, 112, 169, 208, 544, 643, 742
FauI	CCCGC	1 cut(s)	625
Fnu4HI	GCNGC	4 cut(s)	240, 680, 688, 706
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	2 cut(s)	228, 742
Fsp4HI	GCNGC	4 cut(s)	240, 680, 688, 706
GluI	GCNGC	4 cut(s)	240, 680, 688, 706
HaeIII	GGCC	5 cut(s)	218, 226, 251, 533, 789
HapII	CCGG	9 cut(s)	55, 68, 99, 252, 277, 370, 534, 620, 786
Hin1II	CATG	7 cut(s)	80, 116, 173, 212, 548, 647, 746
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	9 cut(s)	55, 68, 99, 252, 277, 370, 534, 620, 786
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	3 cut(s)	73, 419, 445
Hpy188I	TCNGA	2 cut(s)	283, 301
Hpy188III	TCNNGA	2 cut(s)	113, 140
Hpy8I	GTNNAC	3 cut(s)	73, 419, 445
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	328, 655, 745
HpyCH4III	ACNGT	4 cut(s)	26, 389, 494, 695
HpyCH4V	TGCA	2 cut(s)	242, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	138, 300, 596
Hsp92II	CATG	7 cut(s)	80, 116, 173, 212, 548, 647, 746
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	48, 484, 570
LguI	GCTCTTC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	4, 468
Lsp1109I	GCAGC	2 cut(s)	226, 666
LweI	GCATC	1 cut(s)	342
MabI	ACCWGGT	1 cut(s)	517
MaeIII	GTNAC	4 cut(s)	257, 473, 521, 695
MalI	GATC	3 cut(s)	50, 486, 572
MboI	GATC	3 cut(s)	48, 484, 570
MboII	GAAGA	4 cut(s)	288, 361, 679, 760
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	5 cut(s)	162, 228, 543, 642, 742
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	7 cut(s)	55, 295, 311, 315, 318, 324, 464
MseI	TTAA	3 cut(s)	72, 83, 771
MspI	CCGG	9 cut(s)	55, 68, 99, 252, 277, 370, 534, 620, 786
MspR9I	CCNGG	9 cut(s)	68, 100, 357, 428, 468, 519, 621, 684, 786
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	5 cut(s)	357, 428, 468, 519, 684
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	4 cut(s)	68, 100, 621, 786
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	48, 484, 570
NlaIII	CATG	7 cut(s)	80, 116, 173, 212, 548, 647, 746
NlaIV	GGNNCC	3 cut(s)	66, 226, 266
NmuCI	GTSAC	3 cut(s)	257, 473, 695
PagI	TCATGA	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	108
PinAI	ACCGGT	2 cut(s)	276, 369
PkrI	GCNGC	4 cut(s)	241, 681, 689, 707
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	5 cut(s)	355, 426, 466, 517, 682
PspGI	CCWGG	5 cut(s)	355, 426, 466, 517, 682
PspN4I	GGNNCC	3 cut(s)	66, 226, 266
PspOMI	GGGCCC	1 cut(s)	224
PspPI	GGNCC	4 cut(s)	64, 224, 225, 372
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	3 cut(s)	72, 83, 771
SatI	GCNGC	4 cut(s)	240, 680, 688, 706
Sau3AI	GATC	3 cut(s)	48, 484, 570
Sau96I	GGNCC	4 cut(s)	64, 224, 225, 372
ScaI	AGTACT	2 cut(s)	591, 601
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	9 cut(s)	68, 100, 357, 428, 468, 519, 621, 684, 786
SduI	GDGCHC	5 cut(s)	162, 228, 543, 642, 742
SexAI	ACCWGGT	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	342
SinI	GGWCC	2 cut(s)	64, 372
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SsiI	CCGC	4 cut(s)	52, 632, 687, 705
StyD4I	CCNGG	9 cut(s)	66, 98, 355, 426, 466, 517, 619, 682, 784
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	26, 389, 494, 695
TatI	WGTACW	3 cut(s)	494, 589, 599
TauI	GCSGC	2 cut(s)	690, 708
Tru1I	TTAA	3 cut(s)	72, 83, 771
Tru9I	TTAA	3 cut(s)	72, 83, 771
TscAI	CASTG	3 cut(s)	226, 235, 700
TseFI	GTSAC	3 cut(s)	257, 473, 695
TseI	GCWGC	2 cut(s)	239, 679
Tsp45I	GTSAC	3 cut(s)	257, 473, 695
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	4 cut(s)	147, 165, 216, 330
TspRI	CASTG	3 cut(s)	226, 235, 700
VpaK11BI	GGWCC	2 cut(s)	64, 372
ZrmI	AGTACT	2 cut(s)	591, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.