Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006445.1

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

66316 .. 66963

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006445.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggcgcattaccagagcgaataccccacagagtctaccacagacgagtacggcaaccccgttacccgcactgacaagtatggcaacccgattcaccacggcgtgaccggagcaaccaccgggcacggcattcctggcaccactcacgtcaccggaaccggctatggaactcacggtacgaccccgactagcacaccttatggtggacagcaccaggataggggagtggtggaccggatgaaagagaagctaccaggcggtcacaagaatgatccctacagtactactcatacctctactacacagggttacggcgtggctggagagcaccgtgagaataagggagtggtggaccggatcaaagagaagctaccaggcggtcgcaagcatgatccctacagtactactcatagcactactacaccgggttacggcgtggccggagagcaccgtgagaataagggcatggttgacaagatcaaagagaatctaccatgtggtcacaaggatgatccctaccgtactactcacactaccacgactgctgcaacgccttacagtgctgcaacagggcagcaccatgagaagaagggaatgatggacaagatcaaggagaagcttcccggtggacacagcaccactcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

215

Amino Acids

23.26

Weight (kDa)

8.78

Isoelectric Point (pI)

5.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	3 cut(s)	67, 258, 378
AclWI	GGATC	4 cut(s)	266, 365, 386, 506
AcoI	YGGCCR	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	5 cut(s)	50, 178, 283, 403, 523
AfiI	CCNNNNNNNGG	3 cut(s)	203, 220, 431
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	4 cut(s)	133, 213, 253, 373
AluBI	AGCT	3 cut(s)	250, 370, 619
AluI	AGCT	3 cut(s)	250, 370, 619
Alw21I	GWGCWC	2 cut(s)	330, 450
AlwI	GGATC	4 cut(s)	266, 365, 386, 506
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	3 cut(s)	545, 563, 574
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	232, 352
AsuC2I	CCSGG	3 cut(s)	121, 426, 624
AsuHPI	GGTGA	2 cut(s)	86, 142
AvaII	GGWCC	2 cut(s)	232, 352
BaeGI	GKGCMC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	330, 450
BbvI	GCAGC	3 cut(s)	532, 550, 586
BccI	CCATC	1 cut(s)	592
BceAI	ACGGC	5 cut(s)	67, 115, 142, 328, 448
BciT130I	CCWGG	4 cut(s)	135, 215, 255, 375
BcnI	CCSGG	3 cut(s)	121, 426, 624
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	2 cut(s)	277, 397
BisI	GCNGC	3 cut(s)	546, 564, 575
BlsI	GCNGC	3 cut(s)	547, 565, 576
BmcAI	AGTACT	2 cut(s)	283, 403
Bme1390I	CCNGG	7 cut(s)	121, 135, 215, 255, 375, 426, 624
Bme18I	GGWCC	2 cut(s)	232, 352
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	232, 352
BmiI	GGNNCC	2 cut(s)	139, 157
BmrFI	CCNGG	7 cut(s)	121, 135, 215, 255, 375, 426, 624
BpmI	CTGGAG	1 cut(s)	342
BpuMI	CCSGG	3 cut(s)	121, 426, 624
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	4 cut(s)	107, 152, 234, 354
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 220, 431
Bse118I	RCCGGY	1 cut(s)	158
BseBI	CCWGG	4 cut(s)	135, 215, 255, 375
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	243, 514
BseLI	CCNNNNNNNGG	3 cut(s)	203, 220, 431
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	532, 550, 586
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	2 cut(s)	330, 450
BsiSI	CCGG	9 cut(s)	108, 120, 153, 159, 235, 355, 425, 441, 624
BslI	CCNNNNNNNGG	3 cut(s)	203, 220, 431
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	126, 330, 450
Bsp143I	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
BspACI	CCGC	3 cut(s)	67, 258, 378
BspANI	GGCC	1 cut(s)	440
BspLI	GGNNCC	2 cut(s)	139, 157
BspPI	GGATC	4 cut(s)	266, 365, 386, 506
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
Bst2UI	CCWGG	4 cut(s)	135, 215, 255, 375
Bst4CI	ACNGT	7 cut(s)	176, 281, 332, 401, 452, 521, 560
BstC8I	GCNNGC	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	243, 514
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	274, 360, 394, 480, 514, 609
BstMBI	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	4 cut(s)	135, 215, 255, 375
BstSCI	CCNGG	7 cut(s)	119, 133, 213, 253, 373, 424, 622
BstSFI	CTRYAG	2 cut(s)	277, 397
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	532, 550, 586
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	243, 514
BtsIMutI	CAGTG	2 cut(s)	69, 565
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	232, 352
Csp6I	GTAC	5 cut(s)	49, 177, 282, 402, 522
CviAII	CATG	4 cut(s)	389, 466, 495, 581
CviJI	RGCY	6 cut(s)	162, 250, 320, 370, 440, 619
CviKI_1	RGCY	6 cut(s)	162, 250, 320, 370, 440, 619
CviQI	GTAC	5 cut(s)	49, 177, 282, 402, 522
DpnI	GATC	6 cut(s)	273, 359, 393, 479, 513, 608
DpnII	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	232, 352
EcoRII	CCWGG	4 cut(s)	133, 213, 253, 373
FaeI	CATG	4 cut(s)	392, 469, 498, 584
FaiI	YATR	9 cut(s)	81, 165, 201, 291, 390, 411, 467, 496, 582
FatI	CATG	4 cut(s)	388, 465, 494, 580
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	546, 564, 575
FokI	GGATG	2 cut(s)	250, 521
Fsp4HI	GCNGC	3 cut(s)	546, 564, 575
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	546, 564, 575
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	9 cut(s)	108, 120, 153, 159, 235, 355, 425, 441, 624
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	392, 469, 498, 584
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	3 cut(s)	32, 91, 487
HpaII	CCGG	9 cut(s)	108, 120, 153, 159, 235, 355, 425, 441, 624
HphI	GGTGA	2 cut(s)	86, 142
Hpy166II	GTNNAC	6 cut(s)	36, 206, 232, 352, 472, 629
Hpy8I	GTNNAC	6 cut(s)	36, 206, 232, 352, 472, 629
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	7 cut(s)	176, 281, 332, 401, 452, 521, 560
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	548, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	392, 469, 498, 584
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	532, 550, 586
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	7 cut(s)	61, 103, 148, 260, 308, 428, 500
MalI	GATC	6 cut(s)	273, 359, 393, 479, 513, 608
MboI	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
MboII	GAAGA	1 cut(s)	598
MhlI	GDGCHC	3 cut(s)	126, 330, 450
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	1 cut(s)	304
MslI	CAYNNNNRTG	2 cut(s)	267, 507
MspI	CCGG	9 cut(s)	108, 120, 153, 159, 235, 355, 425, 441, 624
MspR9I	CCNGG	7 cut(s)	121, 135, 215, 255, 375, 426, 624
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	4 cut(s)	135, 215, 255, 375
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	3 cut(s)	121, 426, 624
NdeII	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
NlaIII	CATG	4 cut(s)	392, 469, 498, 584
NlaIV	GGNNCC	2 cut(s)	139, 157
NmuCI	GTSAC	4 cut(s)	103, 148, 260, 500
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	91, 487
PkrI	GCNGC	3 cut(s)	547, 565, 576
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	4 cut(s)	133, 213, 253, 373
PspGI	CCWGG	4 cut(s)	133, 213, 253, 373
PspN4I	GGNNCC	2 cut(s)	139, 157
PspPI	GGNCC	2 cut(s)	232, 352
PsrI	GAACNNNNNNTAC	2 cut(s)	160, 192
RsaI	GTAC	5 cut(s)	50, 178, 283, 403, 523
RsaNI	GTAC	5 cut(s)	49, 177, 282, 402, 522
RseI	CAYNNNNRTG	2 cut(s)	267, 507
SatI	GCNGC	3 cut(s)	546, 564, 575
Sau3AI	GATC	6 cut(s)	271, 357, 391, 477, 511, 606
Sau96I	GGNCC	2 cut(s)	232, 352
ScaI	AGTACT	2 cut(s)	283, 403
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	7 cut(s)	121, 135, 215, 255, 375, 426, 624
SduI	GDGCHC	3 cut(s)	126, 330, 450
SetI	ASST	6 cut(s)	150, 199, 252, 296, 372, 621
SfcI	CTRYAG	2 cut(s)	277, 397
SinI	GGWCC	2 cut(s)	232, 352
SmiMI	CAYNNNNRTG	2 cut(s)	267, 507
SsiI	CCGC	3 cut(s)	67, 258, 378
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	7 cut(s)	119, 133, 213, 253, 373, 424, 622
TaaI	ACNGT	7 cut(s)	176, 281, 332, 401, 452, 521, 560
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	643
TatI	WGTACW	2 cut(s)	281, 401
TfiI	GAWTC	2 cut(s)	91, 487
TscAI	CASTG	2 cut(s)	76, 565
TseFI	GTSAC	4 cut(s)	103, 148, 260, 500
TseI	GCWGC	3 cut(s)	545, 563, 574
Tsp45I	GTSAC	4 cut(s)	103, 148, 260, 500
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	76, 565
VpaK11BI	GGWCC	2 cut(s)	232, 352
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	1 cut(s)	189
ZrmI	AGTACT	2 cut(s)	283, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.