Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

6913808 .. 6921802

Gene Structure 7995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12582.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGCAATACCAGAGCGGTTACCCCACTCAGTCTCCCACTGACGAGTACGGAAACCCCGTGGGACGTAAGGACGAGTACGGCAACCCAATTCACACCGGAGCAACCACCGGCCAAGGCGTTCATCCCGTCACCGGAACCGGAACAGGAACTGGTCACGGAGGCGTCACTACTCTCACTCGCTCCGGCTCCAGCTCTAGCTCCTCTGAGGACGATGGCTGTGGTGGAAGGAGGAAGAAGGGTATGAAGGAGAAGATCAAGGAGAAGCTTCCAGGAGGCACCCACAAGACCGACGACCCCTACGGTACAGCCCCGACCACCGCACCTTACGGTGGACAGCAGCAGGATAGGGGAGTGATGGACCAAATCAAACAGAAGATCCCAGGTGGTCAAAAGCAAGATCCCTACAGCACTGGTCAGCATACTACTACACCAGGTTACGGCGTGGCCGGAGAGCACCATGAGAAAAAGGGCATGGTGGACCAGATAAAAGAGAAGATCCCAGGTGGTCAAAAGCAAGATCCCTACAGCACTGCTCATCATACTGGTGCTACACCGGGTTACGGCGTCGCCGGAGAGCATCATGAGAAGAAGGGGATGGTGGACCAGGTGAAAGAGAAGCTACCAGGTGGTCTTACCGGTGGACAAGATCCCCACAACACCACTCACACTCACACCACTGCGGCACCGGCTTACGGTACCGGAACCGGGGAGCACCAGGAGAAGAAGGGCATGATGGACAAGATCAAGGAAAAGCTTCCCGGTGGACACACCACTACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

262

Amino Acids

27.45

Weight (kDa)

8.7

Isoelectric Point (pI)

21.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	56 - 130	1.8e-23	Dehydrin
Dehydrin	PF00257	111 - 170	3e-11	Dehydrin
Dehydrin	PF00257	163 - 210	5e-10	Dehydrin
Dehydrin	PF00257	212 - 257	7e-09	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	698
AccB1I	GGYRCC	3 cut(s)	278, 685, 698
AccBSI	CCGCTC	1 cut(s)	18
AciI	CCGC	3 cut(s)	18, 321, 683
AclWI	GGATC	5 cut(s)	373, 395, 493, 515, 644
AcoI	YGGCCR	2 cut(s)	112, 447
AcyI	GRCGYC	2 cut(s)	165, 567
AfaI	GTAC	4 cut(s)	50, 80, 307, 700
AfiI	CCNNNNNNNGG	6 cut(s)	134, 332, 440, 563, 695, 708
AgeI	ACCGGT	1 cut(s)	638
AjnI	CCWGG	7 cut(s)	271, 382, 433, 502, 606, 625, 717
AluBI	AGCT	5 cut(s)	195, 201, 268, 622, 757
AluI	AGCT	5 cut(s)	195, 201, 268, 622, 757
Alw21I	GWGCWC	2 cut(s)	459, 717
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	5 cut(s)	373, 395, 493, 515, 644
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	112, 447
ApeKI	GCWGC	1 cut(s)	340
AsiGI	ACCGGT	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	756
Asp718I	GGTACC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	361, 481, 604
AsuC2I	CCSGG	3 cut(s)	558, 709, 762
AsuHPI	GGTGA	2 cut(s)	124, 622
AvaII	GGWCC	3 cut(s)	361, 481, 604
BanI	GGYRCC	3 cut(s)	278, 685, 698
Bbv12I	GWGCWC	2 cut(s)	459, 717
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	4 cut(s)	209, 352, 592, 730
BceAI	ACGGC	3 cut(s)	97, 457, 580
BciT130I	CCWGG	7 cut(s)	273, 384, 435, 504, 608, 627, 719
BcnI	CCSGG	3 cut(s)	558, 709, 762
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	2 cut(s)	406, 526
BisI	GCNGC	2 cut(s)	341, 684
BlsI	GCNGC	2 cut(s)	342, 685
Bme18I	GGWCC	3 cut(s)	361, 481, 604
BmgT120I	GGNCC	3 cut(s)	361, 481, 604
BmiI	GGNNCC	6 cut(s)	139, 190, 280, 687, 700, 706
BmsI	GCATC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	175
BpuMI	CCSGG	3 cut(s)	558, 709, 762
BsaHI	GRCGYC	2 cut(s)	165, 567
BsaJI	CCNNGG	5 cut(s)	60, 115, 382, 502, 708
BsaWI	WCCGGW	5 cut(s)	98, 134, 140, 638, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	6 cut(s)	134, 332, 440, 563, 695, 708
Bse118I	RCCGGY	3 cut(s)	110, 638, 688
Bse1I	ACTGG	3 cut(s)	157, 418, 550
BseBI	CCWGG	7 cut(s)	273, 384, 435, 504, 608, 627, 719
BseDI	CCNNGG	5 cut(s)	60, 115, 382, 502, 708
BseGI	GGATG	2 cut(s)	124, 603
BseLI	CCNNNNNNNGG	6 cut(s)	134, 332, 440, 563, 695, 708
BseMII	CTCAG	2 cut(s)	44, 198
BseNI	ACTGG	3 cut(s)	157, 418, 550
BseRI	GAGGAG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	114, 449
BshNI	GGYRCC	3 cut(s)	278, 685, 698
BshTI	ACCGGT	1 cut(s)	638
BsiHKAI	GWGCWC	2 cut(s)	459, 717
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	6 cut(s)	134, 332, 440, 563, 695, 708
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	114, 449
Bsp1286I	GDGCHC	2 cut(s)	459, 717
Bsp143I	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
BspACI	CCGC	3 cut(s)	18, 321, 683
BspANI	GGCC	2 cut(s)	114, 449
BspCNI	CTCAG	2 cut(s)	43, 199
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	6 cut(s)	139, 190, 280, 687, 700, 706
BspPI	GGATC	5 cut(s)	373, 395, 493, 515, 644
BspT107I	GGYRCC	3 cut(s)	278, 685, 698
BsrBI	CCGCTC	1 cut(s)	18
BsrFI	RCCGGY	3 cut(s)	110, 638, 688
BsrI	ACTGG	3 cut(s)	157, 418, 550
BssAI	RCCGGY	3 cut(s)	110, 638, 688
BssECI	CCNNGG	5 cut(s)	60, 115, 382, 502, 708
BssMI	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
BssNI	GRCGYC	2 cut(s)	165, 567
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	7 cut(s)	273, 384, 435, 504, 608, 627, 719
Bst4CI	ACNGT	3 cut(s)	305, 332, 698
BstACI	GRCGYC	2 cut(s)	165, 567
BstDEI	CTNAG	2 cut(s)	30, 207
BstDSI	CCRYGG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	124, 603
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	7 cut(s)	258, 381, 403, 501, 523, 652, 747
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	7 cut(s)	273, 384, 435, 504, 608, 627, 719
BstPI	GGTNACC	1 cut(s)	20
BstSFI	CTRYAG	2 cut(s)	406, 526
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	5 cut(s)	378, 400, 498, 520, 649
BstYI	RGATCY	5 cut(s)	378, 400, 498, 520, 649
BsuRI	GGCC	2 cut(s)	114, 449
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	124, 603
BtsI	GCAGTG	2 cut(s)	531, 678
BtsIMutI	CAGTG	4 cut(s)	39, 411, 531, 678
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	3 cut(s)	110, 638, 688
Cfr13I	GGNCC	3 cut(s)	361, 481, 604
CseI	GACGC	2 cut(s)	154, 556
CsiI	ACCWGGT	3 cut(s)	433, 606, 625
Csp6I	GTAC	4 cut(s)	49, 79, 306, 699
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	4 cut(s)	461, 475, 584, 733
CviQI	GTAC	4 cut(s)	49, 79, 306, 699
DdeI	CTNAG	2 cut(s)	30, 207
DpnI	GATC	7 cut(s)	257, 380, 402, 500, 522, 651, 746
DpnII	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
EaeI	YGGCCR	2 cut(s)	112, 447
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	3 cut(s)	361, 481, 604
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoRII	CCWGG	7 cut(s)	271, 382, 433, 502, 606, 625, 717
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	4 cut(s)	464, 478, 587, 736
FaiI	YATR	7 cut(s)	245, 423, 462, 476, 543, 585, 734
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	4 cut(s)	460, 474, 583, 732
Fnu4HI	GCNGC	2 cut(s)	341, 684
FokI	GGATG	2 cut(s)	111, 610
Fsp4HI	GCNGC	2 cut(s)	341, 684
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	341, 684
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	114, 449
HgaI	GACGC	2 cut(s)	154, 556
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	165, 567
Hin1II	CATG	4 cut(s)	464, 478, 587, 736
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	2 cut(s)	266, 755
HphI	GGTGA	2 cut(s)	124, 622
Hpy166II	GTNNAC	5 cut(s)	335, 481, 604, 644, 767
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	5 cut(s)	335, 481, 604, 644, 767
Hpy99I	CGWCG	2 cut(s)	296, 572
HpyAV	CCTTC	5 cut(s)	222, 232, 241, 586, 721
HpyCH4III	ACNGT	3 cut(s)	305, 332, 698
HpyCH4IV	ACGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	2 cut(s)	30, 207
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	2 cut(s)	165, 567
Hsp92II	CATG	4 cut(s)	464, 478, 587, 736
HspAI	GCGC	1 cut(s)	5
KpnI	GGTACC	1 cut(s)	702
Kzo9I	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
LmnI	GCTCC	5 cut(s)	101, 188, 194, 206, 712
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	589
MabI	ACCWGGT	3 cut(s)	433, 606, 625
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	6 cut(s)	20, 130, 155, 166, 437, 560
MalI	GATC	7 cut(s)	257, 380, 402, 500, 522, 651, 746
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
MboII	GAAGA	6 cut(s)	247, 265, 388, 508, 601, 736
MflI	RGATCY	5 cut(s)	378, 400, 498, 520, 649
MhlI	GDGCHC	2 cut(s)	459, 717
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	5 cut(s)	155, 202, 214, 225, 269
MroXI	GAANNNNTTC	1 cut(s)	756
MslI	CAYNNNNRTG	1 cut(s)	546
MvaI	CCWGG	7 cut(s)	273, 384, 435, 504, 608, 627, 719
MwoI	GCNNNNNNNGC	1 cut(s)	689
NciI	CCSGG	3 cut(s)	558, 709, 762
NdeII	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
NlaIII	CATG	4 cut(s)	464, 478, 587, 736
NlaIV	GGNNCC	6 cut(s)	139, 190, 280, 687, 700, 706
NmuCI	GTSAC	3 cut(s)	130, 155, 166
PagI	TCATGA	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	756
PfoI	TCCNGGA	1 cut(s)	271
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	2 cut(s)	342, 685
Psp6I	CCWGG	7 cut(s)	271, 382, 433, 502, 606, 625, 717
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	7 cut(s)	271, 382, 433, 502, 606, 625, 717
PspN4I	GGNNCC	6 cut(s)	139, 190, 280, 687, 700, 706
PspPI	GGNCC	3 cut(s)	361, 481, 604
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	5 cut(s)	378, 400, 498, 520, 649
RsaI	GTAC	4 cut(s)	50, 80, 307, 700
RsaNI	GTAC	4 cut(s)	49, 79, 306, 699
RseI	CAYNNNNRTG	1 cut(s)	546
SatI	GCNGC	2 cut(s)	341, 684
Sau3AI	GATC	7 cut(s)	255, 378, 400, 498, 520, 649, 744
Sau96I	GGNCC	3 cut(s)	361, 481, 604
SduI	GDGCHC	2 cut(s)	459, 717
SexAI	ACCWGGT	3 cut(s)	433, 606, 625
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	2 cut(s)	406, 526
SinI	GGWCC	3 cut(s)	361, 481, 604
SmiMI	CAYNNNNRTG	1 cut(s)	546
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	3 cut(s)	18, 321, 683
SspMI	CTAG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	305, 332, 698
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	781
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	1 cut(s)	90
TauI	GCSGC	1 cut(s)	686
TscAI	CASTG	4 cut(s)	46, 418, 538, 685
TseFI	GTSAC	3 cut(s)	130, 155, 166
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	3 cut(s)	130, 155, 166
TspDTI	ATGAA	2 cut(s)	113, 260
TspGWI	ACGGA	2 cut(s)	66, 174
TspRI	CASTG	4 cut(s)	46, 418, 538, 685
VpaK11BI	GGWCC	3 cut(s)	361, 481, 604
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.