Rh2CG143600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000632
Physical Location & Seq
Reverse (-)
12661958 .. 12662818
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG143600.1

Sequence Viewer

Length: 372 bp
ATGGCATTAATCTTCACAAATCCTAATAATCTTAATGGTCGACGCAATGAGGTGCACCACGAGCTTAGTTTCCCCTGCTGGCTAGGAGACAAAAACTTCTCTTATCTTATCCGTATCGACTCAGTCGTACATCGTCGCCTCCGGGCAGTTCCACGTCCTCAGTCGTACGTACGTGTCCAGGCAGAGTCTGAGGATGATGGGTACGGCGGGAGGAGGGAGAACAAGGGTTTGAAGGAGAAGATCAAGAAGAAGCTGCCAGGAGGCAACAGTGACCATAGCGGCACAACTAATACGCCACCGTTTGATACCAGAGCCCATGAGAAGAAGGGCATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.1

Weight (kDa)

9.83

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 62 - 123 9.9e-22 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 40
AciI CCGC 2 cut(s) 207, 279
AcoI YGGCCR 1 cut(s) 361
AfaI GTAC 4 cut(s) 129, 167, 171, 203
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 232
AjiI CACGTC 1 cut(s) 155
AjnI CCWGG 2 cut(s) 177, 256
AluBI AGCT 3 cut(s) 64, 253, 355
AluI AGCT 3 cut(s) 64, 253, 355
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 1 cut(s) 361
ApaLI GTGCAC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 253
AseI ATTAAT 1 cut(s) 8
AsuC2I CCSGG 2 cut(s) 143, 360
BaeGI GKGCMC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 316
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 240
BccI CCATC 2 cut(s) 191, 328
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 2 cut(s) 179, 258
BcnI CCSGG 2 cut(s) 143, 360
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 254, 280
BlsI GCNGC 2 cut(s) 255, 281
Bme1390I CCNGG 4 cut(s) 143, 179, 258, 360
BmgBI CACGTC 1 cut(s) 155
BmrFI CCNGG 4 cut(s) 143, 179, 258, 360
BpuMI CCSGG 2 cut(s) 143, 360
BsaAI YACGTR 2 cut(s) 169, 173
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 2 cut(s) 179, 258
BseGI GGATG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 3 cut(s) 135, 173, 180
BseRI GAGGAG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 142, 360
BsiWI CGTACG 2 cut(s) 165, 169
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 57, 316
Bsp143I GATC 2 cut(s) 240, 342
BspACI CCGC 2 cut(s) 207, 279
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 3 cut(s) 134, 172, 181
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 2 cut(s) 240, 342
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 2 cut(s) 179, 258
Bst4CI ACNGT 2 cut(s) 269, 300
BstBAI YACGTR 2 cut(s) 169, 173
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 4 cut(s) 65, 121, 159, 189
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 243, 345
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 240, 342
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 2 cut(s) 179, 258
BstSCI CCNGG 4 cut(s) 141, 177, 256, 358
BstSLI GKGCMC 1 cut(s) 57
BstSNI TACGTA 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 363
BtrI CACGTC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 80
CaiI CAGNNNCTG 1 cut(s) 188
CseI GACGC 1 cut(s) 51
Csp6I GTAC 4 cut(s) 128, 166, 170, 202
CviAII CATG 2 cut(s) 317, 331
CviJI RGCY 6 cut(s) 64, 82, 253, 314, 355, 363
CviKI_1 RGCY 6 cut(s) 64, 82, 253, 314, 355, 363
CviQI GTAC 4 cut(s) 128, 166, 170, 202
DdeI CTNAG 4 cut(s) 65, 121, 159, 189
DpnI GATC 2 cut(s) 242, 344
DpnII GATC 2 cut(s) 240, 342
EaeI YGGCCR 1 cut(s) 361
Eco105I TACGTA 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 316
EcoRII CCWGG 2 cut(s) 177, 256
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 2 cut(s) 320, 334
FaiI YATR 3 cut(s) 276, 318, 332
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 2 cut(s) 316, 330
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 254, 280
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 2 cut(s) 254, 280
FspBI CTAG 1 cut(s) 83
GluI GCNGC 2 cut(s) 254, 280
HaeIII GGCC 1 cut(s) 363
HapII CCGG 2 cut(s) 142, 360
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 320, 334
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 119, 185
HpaII CCGG 2 cut(s) 142, 360
Hpy166II GTNNAC 2 cut(s) 41, 55
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 41, 55
Hpy99I CGWCG 2 cut(s) 45, 138
HpyAV CCTTC 2 cut(s) 226, 319
HpyCH4III ACNGT 2 cut(s) 269, 300
HpyCH4IV ACGT 3 cut(s) 154, 168, 172
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 4 cut(s) 65, 121, 159, 189
HpySE526I ACGT 3 cut(s) 154, 168, 172
Hsp92II CATG 2 cut(s) 320, 334
Kzo9I GATC 2 cut(s) 240, 342
LpnPI CCDG 8 cut(s) 64, 88, 155, 164, 191, 243, 270, 322
Lsp1109I GCAGC 1 cut(s) 240
MaeI CTAG 1 cut(s) 83
MaeII ACGT 3 cut(s) 154, 168, 172
MaeIII GTNAC 1 cut(s) 269
MalI GATC 2 cut(s) 242, 344
MboI GATC 2 cut(s) 240, 342
MboII GAAGA 4 cut(s) 4, 250, 259, 334
MhlI GDGCHC 2 cut(s) 57, 316
MlyI GAGTC 2 cut(s) 113, 194
MnlI CCTC 7 cut(s) 43, 149, 168, 184, 204, 207, 254
MseI TTAA 3 cut(s) 8, 33, 370
MspI CCGG 2 cut(s) 142, 360
MspR9I CCNGG 4 cut(s) 143, 179, 258, 360
MvaI CCWGG 2 cut(s) 179, 258
MwoI GCNNNNNNNGC 1 cut(s) 61
NciI CCSGG 2 cut(s) 143, 360
NdeII GATC 2 cut(s) 240, 342
NlaIII CATG 2 cut(s) 320, 334
NmuCI GTSAC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 123
Pfl23II CGTACG 2 cut(s) 165, 169
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 255, 281
PleI GAGTC 2 cut(s) 113, 193
PpsI GAGTC 2 cut(s) 113, 193
Ppu21I YACGTR 2 cut(s) 169, 173
PshBI ATTAAT 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 177, 256
PspGI CCWGG 2 cut(s) 177, 256
PspLI CGTACG 2 cut(s) 165, 169
PstNI CAGNNNCTG 1 cut(s) 188
PsyI GACNNNGTC 1 cut(s) 122
RsaI GTAC 4 cut(s) 129, 167, 171, 203
RsaNI GTAC 4 cut(s) 128, 166, 170, 202
SalI GTCGAC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 8, 33, 370
SatI GCNGC 2 cut(s) 254, 280
Sau3AI GATC 2 cut(s) 240, 342
SchI GAGTC 2 cut(s) 113, 194
ScrFI CCNGG 4 cut(s) 143, 179, 258, 360
SduI GDGCHC 2 cut(s) 57, 316
SetI ASST 7 cut(s) 54, 66, 157, 171, 175, 255, 357
SnaBI TACGTA 1 cut(s) 169
SsiI CCGC 2 cut(s) 207, 279
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 4 cut(s) 141, 177, 256, 358
TaaI ACNGT 2 cut(s) 269, 300
TaiI ACGT 3 cut(s) 157, 171, 175
TaqI TCGA 2 cut(s) 40, 117
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 8, 33, 370
Tru9I TTAA 3 cut(s) 8, 33, 370
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 274
Tth111I GACNNNGTC 1 cut(s) 122
VneI GTGCAC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.