Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

7099222 .. 7099467

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0088800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAACACATGGTTCAACAACAATATAGCTCCTTATCTACATGACATTATCTTCGACTACATAGCCGTTGGTAACGAGGTCATTCCCGGTTCATTAGGCAACTATGTCTTGCCTGTAATGGAGTCGTTACAAAACATCCTTAAAGACAAAGGGTATGTGACAAAGGTGACCACAGTTGTGCCATCAACTGCCCTAGGATCTTCATACCCGCCCTCTAGTGGGGAATTCACACAAGAGCTAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

81

Amino Acids

8.84

Weight (kDa)

4.43

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 79	8.6e-12	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	218, 219
AgsI	TTSAA	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	29, 238
AluI	AGCT	2 cut(s)	29, 238
AlwI	GGATC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AspA2I	CCTAGG	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	178
AvrII	CCTAGG	1 cut(s)	193
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	4 cut(s)	194, 216, 239, 244
BlnI	CCTAGG	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 219
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	218, 219
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	218, 219
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	175
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	135
CviAII	CATG	2 cut(s)	9, 41
CviJI	RGCY	4 cut(s)	29, 65, 238, 243
CviKI_1	RGCY	4 cut(s)	29, 65, 238, 243
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	12, 44
FaiI	YATR	7 cut(s)	10, 26, 42, 62, 105, 156, 205
FatI	CATG	2 cut(s)	8, 40
FauI	CCCGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	122
FspBI	CTAG	4 cut(s)	194, 216, 239, 244
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	2 cut(s)	12, 44
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	12, 44
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	2 cut(s)	100, 126
MaeI	CTAG	4 cut(s)	194, 216, 239, 244
MaeIII	GTNAC	4 cut(s)	71, 126, 157, 166
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	2 cut(s)	43, 192
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	2 cut(s)	70, 223
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	87
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	12, 44
NmuCI	GTSAC	2 cut(s)	157, 166
OliI	CACNNNNGTG	1 cut(s)	176
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	4 cut(s)	31, 81, 168, 240
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	4 cut(s)	194, 216, 239, 244
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	157, 166
Tsp45I	GTSAC	2 cut(s)	157, 166
TspDTI	ATGAA	3 cut(s)	17, 81, 192
XapI	RAATTY	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	193
XspI	CTAG	4 cut(s)	194, 216, 239, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.