pycom02g11060

Dehydrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000632
Physical Location & Seq
Reverse (-)
7818106 .. 7818708
603 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11060.1

Sequence Viewer

Length: 603 bp
ATGGCGCACTATCAGAACCAATACGGTGCAACACCCCAAGAAACAGATCAGTTTGGAAACCCAATTCAACATGGCACTACCGGAGCCACTGGCTTCGGTACCGGCACAACCGGGTACGGGACTACTAACGACCCGTACACAGGAGGGCAGGAGCAACAGGAAAGAGGGATGATGGACAAGATCAAAGACAAGATTCCAGGGACTGGTGGGGCACGTAGGGCTGACGACCCCTACTCATCGCATGCCCATACCGGTACTGGCACGACTGGAACTGGGTACGGGACTACTGACGCTCCCTACACCGGAGGGGAGTACCGTGAAAGGGGGTTGATGGACAAGGTCAAGGACAAGATTCCAGGGACTGGGGACCGTACGCACGATCCTACACCTTACGGTGGGACAACCTACACCGGAGAGCGCCAGCATGAGGGGATTGTGGACAAGATCAAGGACAAGATTCCGGGGACTGGGCATAGGGATGAAGCCTACTCATCTCATACGACCTCCACCACCGCACCATACGGTGGAACCACCGGAGTGCACCATGAAAAGAAGGGCATCATGGACAAAATCAAAGAAAAACTTCCCGGTGGACACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

201

Amino Acids

21.36

Weight (kDa)

6.44

Isoelectric Point (pI)

-5.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 48 - 121 2.3e-07 Dehydrin
Dehydrin PF00257 138 - 199 2.3e-15 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 98
AccB7I CCANNNNNTGG 3 cut(s) 203, 362, 524
AciI CCGC 1 cut(s) 513
AclWI GGATC 1 cut(s) 374
AfaI GTAC 7 cut(s) 100, 116, 137, 256, 278, 314, 373
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 2 cut(s) 196, 355
AleI CACNNNNGTG 1 cut(s) 536
Alw21I GWGCWC 1 cut(s) 543
Alw44I GTGCAC 1 cut(s) 539
AlwI GGATC 1 cut(s) 374
AlwNI CAGNNNCTG 2 cut(s) 203, 362
ApaLI GTGCAC 1 cut(s) 539
AsiGI ACCGGT 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 582
Asp718I GGTACC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 7, 420
AspS9I GGNCC 1 cut(s) 367
AsuC2I CCSGG 3 cut(s) 112, 462, 588
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 2 cut(s) 214, 543
BanI GGYRCC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 543
BccI CCATC 2 cut(s) 166, 325
BciT130I CCWGG 2 cut(s) 198, 357
BcnI CCSGG 3 cut(s) 112, 462, 588
BfoI RGCGCY 1 cut(s) 421
Bme1390I CCNGG 5 cut(s) 112, 198, 357, 462, 588
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 4 cut(s) 85, 100, 368, 529
BmrFI CCNGG 5 cut(s) 112, 198, 357, 462, 588
BmrI ACTGGG 3 cut(s) 282, 372, 477
BmsI GCATC 1 cut(s) 567
BmuI ACTGGG 3 cut(s) 282, 372, 477
BpuMI CCSGG 3 cut(s) 112, 462, 588
BsaAI YACGTR 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 197, 356, 461
BsaWI WCCGGW 5 cut(s) 80, 251, 302, 410, 533
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse118I RCCGGY 2 cut(s) 101, 251
Bse1I ACTGG 7 cut(s) 94, 208, 262, 271, 277, 367, 472
BseBI CCWGG 2 cut(s) 198, 357
BseDI CCNNGG 3 cut(s) 197, 356, 461
BseGI GGATG 2 cut(s) 174, 484
BseNI ACTGG 7 cut(s) 94, 208, 262, 271, 277, 367, 472
BseSI GKGCMC 2 cut(s) 214, 543
BshNI GGYRCC 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 9 cut(s) 81, 102, 111, 252, 303, 411, 461, 534, 588
BsiWI CGTACG 1 cut(s) 371
BslFI GGGAC 7 cut(s) 133, 214, 295, 373, 380, 412, 478
BsmFI GGGAC 7 cut(s) 133, 214, 295, 373, 380, 412, 478
Bsp1286I GDGCHC 2 cut(s) 214, 543
Bsp143I GATC 4 cut(s) 46, 180, 379, 444
BspACI CCGC 1 cut(s) 513
BspLI GGNNCC 4 cut(s) 85, 100, 368, 529
BspPI GGATC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 98
BsrFI RCCGGY 2 cut(s) 101, 251
BsrI ACTGG 7 cut(s) 94, 208, 262, 271, 277, 367, 472
BssAI RCCGGY 2 cut(s) 101, 251
BssECI CCNNGG 3 cut(s) 197, 356, 461
BssMI GATC 4 cut(s) 46, 180, 379, 444
Bst2UI CCWGG 2 cut(s) 198, 357
Bst4CI ACNGT 5 cut(s) 26, 317, 371, 395, 524
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 243, 422
BstF5I GGATG 2 cut(s) 174, 484
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 2 cut(s) 7, 420
BstKTI GATC 4 cut(s) 49, 183, 382, 447
BstMBI GATC 4 cut(s) 46, 180, 379, 444
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 198, 357
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 5 cut(s) 110, 196, 355, 460, 586
BstSLI GKGCMC 2 cut(s) 214, 543
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 174, 484
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 243, 422
CaiI CAGNNNCTG 2 cut(s) 203, 362
CfoI GCGC 2 cut(s) 7, 420
Cfr10I RCCGGY 2 cut(s) 101, 251
Cfr13I GGNCC 1 cut(s) 367
CseI GACGC 1 cut(s) 299
Csp6I GTAC 7 cut(s) 99, 115, 136, 255, 277, 313, 372
CspAI ACCGGT 1 cut(s) 251
CviAII CATG 5 cut(s) 71, 242, 425, 545, 562
CviJI RGCY 4 cut(s) 86, 93, 221, 485
CviKI_1 RGCY 4 cut(s) 86, 93, 221, 485
CviQI GTAC 7 cut(s) 99, 115, 136, 255, 277, 313, 372
DpnI GATC 4 cut(s) 48, 182, 381, 446
DpnII GATC 4 cut(s) 46, 180, 379, 444
Eco47I GGWCC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 196, 355
FaeI CATG 5 cut(s) 74, 245, 428, 548, 565
FaiI YATR 9 cut(s) 72, 243, 249, 426, 474, 498, 520, 546, 563
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FaqI GGGAC 7 cut(s) 133, 214, 295, 373, 380, 412, 478
FatI CATG 5 cut(s) 70, 241, 424, 544, 561
FokI GGATG 2 cut(s) 181, 491
GlaI GCGC 2 cut(s) 6, 419
HaeII RGCGCY 1 cut(s) 421
HapII CCGG 9 cut(s) 81, 102, 111, 252, 303, 411, 461, 534, 588
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 7, 420
Hin1II CATG 5 cut(s) 74, 245, 428, 548, 565
Hin6I GCGC 2 cut(s) 5, 418
HinP1I GCGC 2 cut(s) 5, 418
HinfI GANTC 3 cut(s) 193, 352, 457
HpaII CCGG 9 cut(s) 81, 102, 111, 252, 303, 411, 461, 534, 588
Hpy166II GTNNAC 4 cut(s) 138, 439, 541, 593
Hpy188I TCNGA 1 cut(s) 15
Hpy8I GTNNAC 4 cut(s) 138, 439, 541, 593
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 5 cut(s) 26, 317, 371, 395, 524
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 29, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 5 cut(s) 74, 245, 428, 548, 565
HspAI GCGC 2 cut(s) 5, 418
KpnI GGTACC 1 cut(s) 102
Kzo9I GATC 4 cut(s) 46, 180, 379, 444
LmnI GCTCC 3 cut(s) 83, 151, 298
LweI GCATC 1 cut(s) 567
MaeII ACGT 1 cut(s) 214
MalI GATC 4 cut(s) 48, 182, 381, 446
MboI GATC 4 cut(s) 46, 180, 379, 444
MhlI GDGCHC 2 cut(s) 214, 543
MluCI AATT 1 cut(s) 63
MnlI CCTC 5 cut(s) 137, 158, 299, 421, 514
MroXI GAANNNNTTC 1 cut(s) 582
MslI CAYNNNNRTG 2 cut(s) 477, 536
MspI CCGG 9 cut(s) 81, 102, 111, 252, 303, 411, 461, 534, 588
MspR9I CCNGG 5 cut(s) 112, 198, 357, 462, 588
MvaI CCWGG 2 cut(s) 198, 357
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 3 cut(s) 112, 462, 588
NdeII GATC 4 cut(s) 46, 180, 379, 444
NlaIII CATG 5 cut(s) 74, 245, 428, 548, 565
NlaIV GGNNCC 4 cut(s) 85, 100, 368, 529
NspI RCATGY 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 536
PaeI GCATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 3 cut(s) 193, 352, 457
Pfl23II CGTACG 1 cut(s) 371
PflFI GACNNNGTC 1 cut(s) 338
PflMI CCANNNNNTGG 3 cut(s) 203, 362, 524
PinAI ACCGGT 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 196, 355
PspGI CCWGG 2 cut(s) 196, 355
PspLI CGTACG 1 cut(s) 371
PspN4I GGNNCC 4 cut(s) 85, 100, 368, 529
PspPI GGNCC 1 cut(s) 367
PstNI CAGNNNCTG 2 cut(s) 203, 362
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 7 cut(s) 100, 116, 137, 256, 278, 314, 373
RsaNI GTAC 7 cut(s) 99, 115, 136, 255, 277, 313, 372
RseI CAYNNNNRTG 2 cut(s) 477, 536
Sau3AI GATC 4 cut(s) 46, 180, 379, 444
Sau96I GGNCC 1 cut(s) 367
ScrFI CCNGG 5 cut(s) 112, 198, 357, 462, 588
SduI GDGCHC 2 cut(s) 214, 543
SetI ASST 5 cut(s) 217, 342, 391, 407, 506
SfaNI GCATC 1 cut(s) 567
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 477, 536
SphI GCATGC 1 cut(s) 245
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 513
StyD4I CCNGG 5 cut(s) 110, 196, 355, 460, 586
TaaI ACNGT 5 cut(s) 26, 317, 371, 395, 524
TaiI ACGT 1 cut(s) 217
TasI AATT 1 cut(s) 63
TfiI GAWTC 3 cut(s) 193, 352, 457
TscAI CASTG 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 495, 561
TspRI CASTG 1 cut(s) 94
Tth111I GACNNNGTC 1 cut(s) 338
Van91I CCANNNNNTGG 3 cut(s) 203, 362, 524
VneI GTGCAC 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 367
XceI RCATGY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.