Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11685738 .. 11687790

Gene Structure 2053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1140100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCGAATTATGGTTCAACACCCGAAAAAACTAACGAGAACTACGGGAACCCGACTTATAACGGTAGTGCAGGAGCCGGTAGGACCGACGAGTTAGGGAACGTGGTTCAACACGGTCGGACTGATACTGGCTACGGGACTGCTCATGCCAAGCCTGGTGATGAAGTGATTGTTGGACGTCATGGCGGCCCTGCCGTACTTCAGCGCTCCGGAAGCTCTAGCTCTTCTGAAGATGATGGGCTAGGTGGAAGAAGGAAGAAGGGACTAAAAGAAAAGATAAAGGAGAAGCTACCAGGTGGTGGTAACAAAGATGACCAGTACACTCATGGAACGCAGACCACTACACCTTACGGCGGTGGGACGACCTACACAGGTGAAGGAGAGCACCACCAGAAAAGGGGTGTGATGGACAAGGTAAAGGAGAAGCTGCCAGGTGGTGGTAACAAGGATGACCAGTACTCTCATGGAACGCAGACCGCTACACCTTATGGTGGTGGGACCACCTATGCAGGAGAAGGAGAGCGCGACCAGAAGAAGGGTGTGATGGACAAGGTGAAGGAGCAGCTGCCAGGCGGTGCTAGCAAGGATGACCAGTACTCGCATGCAAAGCCGACCACCGGTGCACATTACGGCGGTGGGACCACCTATGCAGGAGAAGGAGAGCACCACCAGAAAAAGGGTGTGACGGACAAGGTAAAGGAGAAGCTGCCAGGCGGTGCTAGCAAGGATGACCAGTACTTGCATGCAAAGCCGACCACCGGTGCACAGTACGGCGGTGGGACCACCTATGCAGGAGAAGGCGAGCACCACCAGGAGAAGGGTGTAATGGACAAGATAAAGGATAAGCTGCCATTTGGTGGCAGCAAGGATGGAGAAGGAGAGCGCCACCAGGAGAAGGGTATGATGGACAAGACAAAGGAGAAGCTGCCAGGTGGGCATAAGGATAACCAGTATTCTCATGACACGTCAACTACTGCTGCAACTTATGGTGGGACAGCGAACATAGGAGAGCACCAGGAAAAGAAAGGCATAATGGAGAAGGTCAAAGAGAAGCTTCCTGGCGGCCACAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0008270 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050832 GO:0050896 GO:0050897 GO:0051704 GO:0051707 GO:0097305 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

359

Amino Acids

37.92

Weight (kDa)

8.54

Isoelectric Point (pI)

16.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	14 - 146	3.8e-28	Dehydrin
Dehydrin	PF00257	171 - 238	6.9e-13	Dehydrin
Dehydrin	PF00257	218 - 284	1.8e-12	Dehydrin
Dehydrin	PF00257	289 - 356	4.3e-16	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AatII	GACGTC	1 cut(s)	181
AccB7I	CCANNNNNTGG	3 cut(s)	299, 437, 857
AccII	CGCG	1 cut(s)	525
AccIII	TCCGGA	1 cut(s)	209
AciI	CCGC	8 cut(s)	186, 354, 477, 573, 633, 714, 774, 1062
AcoI	YGGCCR	1 cut(s)	1063
AcuI	CTGAAG	2 cut(s)	185, 249
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	6 cut(s)	198, 320, 458, 596, 737, 770
AfeI	AGCGCT	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	963
AgeI	ACCGGT	2 cut(s)	617, 758
AgsI	TTSAA	2 cut(s)	18, 110
AjiI	CACGTC	1 cut(s)	966
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	9 cut(s)	216, 222, 289, 427, 565, 706, 847, 925, 1054
AluI	AGCT	9 cut(s)	216, 222, 289, 427, 565, 706, 847, 925, 1054
Alw21I	GWGCWC	6 cut(s)	387, 625, 666, 766, 807, 1014
Alw44I	GTGCAC	2 cut(s)	621, 762
Aor13HI	TCCGGA	1 cut(s)	209
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	2 cut(s)	187, 1063
ApaLI	GTGCAC	2 cut(s)	621, 762
ApeKI	GCWGC	8 cut(s)	427, 562, 565, 706, 847, 861, 925, 977
AsiGI	ACCGGT	2 cut(s)	617, 758
AspLEI	GCGC	3 cut(s)	207, 525, 885
AspS9I	GGNCC	5 cut(s)	84, 188, 498, 639, 780
AsuHPI	GGTGA	3 cut(s)	170, 386, 565
AsuNHI	GCTAGC	2 cut(s)	578, 719
AvaII	GGWCC	4 cut(s)	84, 498, 639, 780
BaeGI	GKGCMC	2 cut(s)	625, 766
Bbv12I	GWGCWC	6 cut(s)	387, 625, 666, 766, 807, 1014
BbvI	GCAGC	8 cut(s)	414, 552, 574, 693, 834, 873, 912, 964
BccI	CCATC	5 cut(s)	230, 400, 538, 863, 898
BceAI	ACGGC	4 cut(s)	179, 367, 646, 787
BfaI	CTAG	4 cut(s)	219, 242, 579, 720
BfoI	RGCGCY	2 cut(s)	208, 886
BglI	GCCNNNNNGGC	1 cut(s)	934
BmcAI	AGTACT	3 cut(s)	458, 596, 737
Bme18I	GGWCC	4 cut(s)	84, 498, 639, 780
BmgBI	CACGTC	1 cut(s)	966
BmgT120I	GGNCC	5 cut(s)	84, 188, 498, 639, 780
BmiI	GGNNCC	5 cut(s)	50, 76, 499, 640, 781
BmtI	GCTAGC	2 cut(s)	582, 723
BsaHI	GRCGYC	1 cut(s)	178
BsaWI	WCCGGW	3 cut(s)	209, 617, 758
Bse118I	RCCGGY	3 cut(s)	77, 617, 758
Bse1I	ACTGG	6 cut(s)	133, 316, 454, 592, 733, 949
BseAI	TCCGGA	1 cut(s)	209
BseGI	GGATG	4 cut(s)	454, 592, 733, 874
BseNI	ACTGG	6 cut(s)	133, 316, 454, 592, 733, 949
BseSI	GKGCMC	2 cut(s)	625, 766
BseXI	GCAGC	8 cut(s)	414, 552, 574, 693, 834, 873, 912, 964
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	189, 1065
BshTI	ACCGGT	2 cut(s)	617, 758
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	6 cut(s)	387, 625, 666, 766, 807, 1014
BsiSI	CCGG	4 cut(s)	78, 210, 618, 759
BslFI	GGGAC	7 cut(s)	151, 276, 373, 511, 652, 793, 1006
BsmFI	GGGAC	7 cut(s)	151, 276, 373, 511, 652, 793, 1006
BsnI	GGCC	2 cut(s)	189, 1065
Bsp1286I	GDGCHC	6 cut(s)	387, 625, 666, 766, 807, 1014
Bsp13I	TCCGGA	1 cut(s)	209
BspACI	CCGC	8 cut(s)	186, 354, 477, 573, 633, 714, 774, 1062
BspANI	GGCC	2 cut(s)	189, 1065
BspEI	TCCGGA	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	525
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	5 cut(s)	50, 76, 499, 640, 781
BspOI	GCTAGC	2 cut(s)	582, 723
BspQI	GCTCTTC	1 cut(s)	229
BsrFI	RCCGGY	3 cut(s)	77, 617, 758
BsrI	ACTGG	6 cut(s)	133, 316, 454, 592, 733, 949
BssAI	RCCGGY	3 cut(s)	77, 617, 758
BssNI	GRCGYC	1 cut(s)	178
Bst4CI	ACNGT	3 cut(s)	65, 116, 768
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	178
BstC8I	GCNNGC	5 cut(s)	580, 603, 721, 744, 803
BstF5I	GGATG	4 cut(s)	454, 592, 733, 874
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	2 cut(s)	208, 886
BstHHI	GCGC	3 cut(s)	207, 525, 885
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	6 cut(s)	213, 579, 607, 720, 748, 934
BstNSI	RCATGY	2 cut(s)	605, 746
BstSLI	GKGCMC	2 cut(s)	625, 766
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	8 cut(s)	414, 552, 574, 693, 834, 873, 912, 964
BsuRI	GGCC	2 cut(s)	189, 1065
BtrI	CACGTC	1 cut(s)	966
BtsCI	GGATG	4 cut(s)	454, 592, 733, 874
Cac8I	GCNNGC	5 cut(s)	580, 603, 721, 744, 803
CciI	TCATGA	1 cut(s)	958
CfoI	GCGC	3 cut(s)	207, 525, 885
Cfr10I	RCCGGY	3 cut(s)	77, 617, 758
Cfr13I	GGNCC	5 cut(s)	84, 188, 498, 639, 780
CsiI	ACCWGGT	1 cut(s)	292
Csp6I	GTAC	6 cut(s)	197, 319, 457, 595, 736, 769
CspAI	ACCGGT	2 cut(s)	617, 758
CviAII	CATG	7 cut(s)	146, 182, 326, 464, 602, 743, 959
CviQI	GTAC	6 cut(s)	197, 319, 457, 595, 736, 769
EaeI	YGGCCR	1 cut(s)	1063
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco47I	GGWCC	4 cut(s)	84, 498, 639, 780
Eco47III	AGCGCT	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	185, 249
FaeI	CATG	7 cut(s)	149, 185, 329, 467, 605, 746, 962
FalI	AAGNNNNNCTT	2 cut(s)	1038, 1070
FaqI	GGGAC	7 cut(s)	151, 276, 373, 511, 652, 793, 1006
FatI	CATG	7 cut(s)	145, 181, 325, 463, 601, 742, 958
FokI	GGATG	4 cut(s)	461, 599, 740, 881
FspBI	CTAG	4 cut(s)	219, 242, 579, 720
GlaI	GCGC	3 cut(s)	206, 524, 884
HaeII	RGCGCY	2 cut(s)	208, 886
HaeIII	GGCC	2 cut(s)	189, 1065
HapII	CCGG	4 cut(s)	78, 210, 618, 759
HhaI	GCGC	3 cut(s)	207, 525, 885
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	7 cut(s)	149, 185, 329, 467, 605, 746, 962
Hin6I	GCGC	3 cut(s)	205, 523, 883
HinP1I	GCGC	3 cut(s)	205, 523, 883
HincII	GTYRAC	1 cut(s)	969
HindII	GTYRAC	1 cut(s)	969
HindIII	AAGCTT	1 cut(s)	1052
HpaII	CCGG	4 cut(s)	78, 210, 618, 759
HphI	GGTGA	3 cut(s)	170, 386, 565
Hpy166II	GTNNAC	4 cut(s)	321, 623, 764, 969
Hpy188I	TCNGA	2 cut(s)	120, 229
Hpy188III	TCNNGA	2 cut(s)	210, 959
Hpy8I	GTNNAC	4 cut(s)	321, 623, 764, 969
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4III	ACNGT	3 cut(s)	65, 116, 768
HpyCH4IV	ACGT	3 cut(s)	102, 178, 965
HpyF10VI	GCNNNNNNNGC	6 cut(s)	213, 579, 607, 720, 748, 934
HpySE526I	ACGT	3 cut(s)	102, 178, 965
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	7 cut(s)	149, 185, 329, 467, 605, 746, 962
HspAI	GCGC	3 cut(s)	205, 523, 883
Kpn2I	TCCGGA	1 cut(s)	209
LguI	GCTCTTC	1 cut(s)	229
LmnI	GCTCC	3 cut(s)	74, 212, 559
Lsp1109I	GCAGC	8 cut(s)	414, 552, 574, 693, 834, 873, 912, 964
MabI	ACCWGGT	1 cut(s)	292
MaeI	CTAG	4 cut(s)	219, 242, 579, 720
MaeII	ACGT	3 cut(s)	102, 178, 965
MaeIII	GTNAC	3 cut(s)	302, 440, 682
MboII	GAAGA	5 cut(s)	216, 242, 261, 268, 544
MhlI	GDGCHC	6 cut(s)	387, 625, 666, 766, 807, 1014
MluCI	AATT	1 cut(s)	7
MmeI	TCCRAC	2 cut(s)	98, 154
MroI	TCCGGA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	4 cut(s)	78, 210, 618, 759
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	6 cut(s)	213, 579, 607, 720, 748, 934
NheI	GCTAGC	2 cut(s)	578, 719
NlaIII	CATG	7 cut(s)	149, 185, 329, 467, 605, 746, 962
NlaIV	GGNNCC	5 cut(s)	50, 76, 499, 640, 781
NmuCI	GTSAC	1 cut(s)	682
NspI	RCATGY	2 cut(s)	605, 746
PaeI	GCATGC	2 cut(s)	605, 746
PagI	TCATGA	1 cut(s)	958
PciSI	GCTCTTC	1 cut(s)	229
PflMI	CCANNNNNTGG	3 cut(s)	299, 437, 857
PinAI	ACCGGT	2 cut(s)	617, 758
PsiI	TTATAA	1 cut(s)	60
PspN4I	GGNNCC	5 cut(s)	50, 76, 499, 640, 781
PspPI	GGNCC	5 cut(s)	84, 188, 498, 639, 780
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	6 cut(s)	198, 320, 458, 596, 737, 770
RsaNI	GTAC	6 cut(s)	197, 319, 457, 595, 736, 769
SapI	GCTCTTC	1 cut(s)	229
Sau96I	GGNCC	5 cut(s)	84, 188, 498, 639, 780
ScaI	AGTACT	3 cut(s)	458, 596, 737
SduI	GDGCHC	6 cut(s)	387, 625, 666, 766, 807, 1014
SexAI	ACCWGGT	1 cut(s)	292
SgrAI	CRCCGGYG	2 cut(s)	617, 758
SinI	GGWCC	4 cut(s)	84, 498, 639, 780
SphI	GCATGC	2 cut(s)	605, 746
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	8 cut(s)	186, 354, 477, 573, 633, 714, 774, 1062
SspMI	CTAG	4 cut(s)	219, 242, 579, 720
TaaI	ACNGT	3 cut(s)	65, 116, 768
TaiI	ACGT	3 cut(s)	105, 181, 968
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	7
TatI	WGTACW	4 cut(s)	318, 456, 594, 735
TauI	GCSGC	2 cut(s)	189, 1065
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	8 cut(s)	427, 562, 565, 706, 847, 861, 925, 977
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	701
Van91I	CCANNNNNTGG	3 cut(s)	299, 437, 857
VneI	GTGCAC	2 cut(s)	621, 762
VpaK11BI	GGWCC	4 cut(s)	84, 498, 639, 780
XceI	RCATGY	2 cut(s)	605, 746
XcmI	CCANNNNNNNNNTGG	2 cut(s)	323, 461
XspI	CTAG	4 cut(s)	219, 242, 579, 720
ZraI	GACGTC	1 cut(s)	179
ZrmI	AGTACT	3 cut(s)	458, 596, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.