Rorug02G0089400

Dehydrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000632
Physical Location & Seq
Forward (+)
7151779 .. 7152618
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0089400.1

Sequence Viewer

Length: 639 bp
ATGATGAGGACGTCTTTCCCTATTTTGTTCGTGTTGTCTCTCATTCTCTCTTTCTCCTATGCTGCTGTGCAAGACTTCTGTGTTGCAGACTACACAGCTCCTCAAGGCCCTGCAGGCTACTCTTGCAAAAATCCTGCAAATGTTACAGTGGATGATTTCGTCTACTCTGCCCTAGGAGTTCCTGGTAACACCTCAAATATGATCAAAACCGGAATCACCACCGCATTTTCTTCTCAATTCCCTGGTTTGAATGGCCTTGGCGTTGCATTAGCTCGCGCAGACTTGGCTGTTGGTGGAGTTGTCCCAATGCACACACACCATGGAGCTTCAGAAATTGTACTTATTATTGAAGGAACCATAACCGCCGGGTTCATTTCCTCAGATAACAAAGTTTATCTAAAAACTCTTAAGAAGGGTGACATCATGGTTTTCCCTCAAGGGCTGTTGCACTTCCAAGTGAATGTTGGTGATACTCCAGCTCTTGAGTTTGTTAGCTTCAGCAGTGATAGCCCCGGTCTGCAGATTCTCCATACCGCACTATTTCAAAACAATTTACCTACTGATCTAATCACGCGATCCACTTTCCTCGACACTGCTGAGATAAAGAGACTCAAGGCTCTTCTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

212

Amino Acids

22.52

Weight (kDa)

5.89

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 58 - 201 3.8e-37 Cupin
Cupin_2 PF07883 93 - 160 8.8e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 162
AccII CGCG 2 cut(s) 276, 574
AciI CCGC 3 cut(s) 222, 363, 534
AclWI GGATC 1 cut(s) 570
AcuI CTGAAG 2 cut(s) 312, 481
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 339, 631
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 250, 350, 545
AjnI CCWGG 2 cut(s) 181, 241
AluBI AGCT 5 cut(s) 98, 272, 326, 479, 495
AluI AGCT 5 cut(s) 98, 272, 326, 479, 495
Alw26I GTCTC 2 cut(s) 42, 601
AlwI GGATC 1 cut(s) 570
AoxI GGCC 2 cut(s) 106, 253
ApeKI GCWGC 1 cut(s) 62
AspA2I CCTAGG 1 cut(s) 172
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 2 cut(s) 367, 513
AsuHPI GGTGA 3 cut(s) 208, 428, 479
AvrII CCTAGG 1 cut(s) 172
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 183, 243
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 2 cut(s) 367, 513
BcoDI GTCTC 2 cut(s) 42, 601
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 2 cut(s) 111, 518
BfrI CTTAAG 1 cut(s) 407
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 1 cut(s) 63
BlnI CCTAGG 1 cut(s) 172
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 4 cut(s) 183, 243, 367, 513
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 4 cut(s) 183, 243, 367, 513
BpmI CTGGAG 1 cut(s) 459
BpuEI CTTGAG 4 cut(s) 87, 420, 503, 596
BpuMI CCSGG 2 cut(s) 367, 513
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 5 cut(s) 172, 241, 256, 319, 511
BsaWI WCCGGW 1 cut(s) 209
BseBI CCWGG 2 cut(s) 183, 243
BseDI CCNNGG 5 cut(s) 172, 241, 256, 319, 511
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 393, 588
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 2 cut(s) 276, 574
BshFI GGCC 2 cut(s) 108, 255
BsiSI CCGG 3 cut(s) 210, 366, 513
BslFI GGGAC 1 cut(s) 287
BsmAI GTCTC 2 cut(s) 42, 601
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 2 cut(s) 108, 255
Bsp143I GATC 3 cut(s) 201, 562, 575
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 3 cut(s) 222, 363, 534
BspANI GGCC 2 cut(s) 108, 255
BspCNI CTCAG 2 cut(s) 392, 589
BspFNI CGCG 2 cut(s) 276, 574
BspLI GGNNCC 1 cut(s) 355
BspMAI CTGCAG 2 cut(s) 115, 522
BspPI GGATC 1 cut(s) 570
BspQI GCTCTTC 1 cut(s) 624
BspTI CTTAAG 1 cut(s) 407
BssECI CCNNGG 5 cut(s) 172, 241, 256, 319, 511
BssMI GATC 3 cut(s) 201, 562, 575
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 3 cut(s) 172, 256, 319
Bst2UI CCWGG 2 cut(s) 183, 243
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 624
BstACI GRCGYC 1 cut(s) 11
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 115, 274
BstDEI CTNAG 2 cut(s) 379, 597
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 2 cut(s) 276, 574
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 3 cut(s) 204, 565, 578
BstMAI GTCTC 2 cut(s) 42, 601
BstMBI GATC 3 cut(s) 201, 562, 575
BstMWI GCNNNNNNNGC 4 cut(s) 114, 123, 284, 507
BstNI CCWGG 2 cut(s) 183, 243
BstSCI CCNGG 4 cut(s) 181, 241, 365, 511
BstSFI CTRYAG 2 cut(s) 111, 518
BstUI CGCG 2 cut(s) 276, 574
BstV1I GCAGC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 108, 255
BtgI CCRYGG 1 cut(s) 319
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 2 cut(s) 508, 591
BtsIMutI CAGTG 3 cut(s) 153, 508, 591
Cac8I GCNNGC 2 cut(s) 115, 274
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 338, 630
CviAII CATG 2 cut(s) 320, 424
CviQI GTAC 2 cut(s) 338, 630
DdeI CTNAG 2 cut(s) 379, 597
DpnI GATC 3 cut(s) 203, 564, 577
DpnII GATC 3 cut(s) 201, 562, 575
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco130I CCWWGG 3 cut(s) 172, 256, 319
Eco57I CTGAAG 2 cut(s) 312, 481
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 181, 241
EcoT14I CCWWGG 3 cut(s) 172, 256, 319
ErhI CCWWGG 3 cut(s) 172, 256, 319
FaeI CATG 2 cut(s) 323, 427
FaiI YATR 6 cut(s) 60, 200, 321, 359, 425, 531
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 319, 423
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 2 cut(s) 108, 255
HapII CCGG 3 cut(s) 210, 366, 513
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 323, 427
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 3 cut(s) 213, 523, 609
HpaII CCGG 3 cut(s) 210, 366, 513
HphI GGTGA 3 cut(s) 208, 428, 479
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 331, 382
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 344, 406
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 9 cut(s) 70, 86, 113, 126, 137, 266, 310, 448, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 123, 284, 507
HpyF3I CTNAG 2 cut(s) 379, 597
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 323, 427
HspAI GCGC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 3 cut(s) 201, 562, 575
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 2 cut(s) 103, 323
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 142, 185, 416
MalI GATC 3 cut(s) 203, 564, 577
MboI GATC 3 cut(s) 201, 562, 575
MboII GAAGA 2 cut(s) 222, 611
MluCI AATT 4 cut(s) 236, 333, 550, 634
MlyI GAGTC 1 cut(s) 603
MnlI CCTC 5 cut(s) 111, 202, 388, 444, 596
MseI TTAA 2 cut(s) 408, 637
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 3 cut(s) 210, 366, 513
MspR9I CCNGG 4 cut(s) 183, 243, 367, 513
MvaI CCWGG 2 cut(s) 183, 243
MvnI CGCG 2 cut(s) 276, 574
MwoI GCNNNNNNNGC 4 cut(s) 114, 123, 284, 507
NciI CCSGG 2 cut(s) 367, 513
NcoI CCATGG 1 cut(s) 319
NdeII GATC 3 cut(s) 201, 562, 575
NlaIII CATG 2 cut(s) 323, 427
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 213, 523
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 181, 241
PspGI CCWGG 2 cut(s) 181, 241
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 2 cut(s) 115, 522
RsaI GTAC 2 cut(s) 339, 631
RsaNI GTAC 2 cut(s) 338, 630
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 2 cut(s) 408, 637
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 201, 562, 575
Sau96I GGNCC 1 cut(s) 107
SbfI CCTGCAGG 1 cut(s) 115
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 4 cut(s) 183, 243, 367, 513
SdaI CCTGCAGG 1 cut(s) 115
SetI ASST 8 cut(s) 14, 100, 194, 274, 328, 481, 497, 559
SfcI CTRYAG 2 cut(s) 111, 518
SmlI CTYRAG 5 cut(s) 102, 407, 435, 482, 611
SmoI CTYRAG 5 cut(s) 102, 407, 435, 482, 611
Sse8387I CCTGCAGG 1 cut(s) 115
Sse9I AATT 4 cut(s) 236, 333, 550, 634
SsiI CCGC 3 cut(s) 222, 363, 534
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 4 cut(s) 181, 241, 365, 511
StyI CCWWGG 3 cut(s) 172, 256, 319
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 588
TasI AATT 4 cut(s) 236, 333, 550, 634
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 213, 523
Tru1I TTAA 2 cut(s) 408, 637
Tru9I TTAA 2 cut(s) 408, 637
TscAI CASTG 3 cut(s) 153, 508, 598
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 361
TspRI CASTG 3 cut(s) 153, 508, 598
Vha464I CTTAAG 1 cut(s) 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XmaJI CCTAGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.