pycom15g22290

Dehydrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000632
Physical Location & Seq
Reverse (-)
16395691 .. 16396305
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g22290.1

Sequence Viewer

Length: 615 bp
ATGGCGAATTATCAGACTAAATATGGTACAACGCCCCAAGACATGGATGAGTATGGGAACCCGATTCAACAGGGTACTACCGGAGGCTTCGGTGGTGCCACCACTGGTACTGGGTACGGGGCAACAGGAGGGCAGCAGCAACAAGAGAGAGGTACTGGCATGACTGGAAGTGGGTACGGGGCAATAGGAGGGCAGCAGCAACAAGAGAGAGGTACTAGCATGACTGGAAGTGGTTACGGGACTACTGATGCCCCGTACACAGGAGGGCAGCAACAACAAGAGAGAGGGATGATGGACAAGATCAAGGAAAAGATTCCAGGAACTGGTGGTGGACGTAGGGATGACGACCCCTACTCATCGAATGCCCAGACCGGTACTGGGATGACTGGAACTGGGCACGGTACTACTGACGCCCCGTACACTGGAGGGGAGTACGAAGAAAGGGGGATGATGGACAAGGTCAAGGACAAGATGCCGGGGACTGGGCAGAGGGATGAAACCCACTCATCTCAGACGACCACCACCACACCTTACGGTGGCACCACCGGAGAGCACCAGGAAAAGAAGGGCGCCATGGACAAGATCAAAGAAAAGCTTCCCGGTGGACGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dehydrin

Protein Analysis

205

Amino Acids

21.37

Weight (kDa)

5.58

Isoelectric Point (pI)

18.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 13 - 161 4.3e-10 Dehydrin
Dehydrin PF00257 164 - 202 1.8e-07 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 95, 539, 569
AccB7I CCANNNNNTGG 2 cut(s) 43, 323
AcyI GRCGYC 3 cut(s) 411, 570, 607
AfiI CCNNNNNNNGG 7 cut(s) 43, 260, 323, 378, 422, 482, 536
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 2 cut(s) 316, 555
AluBI AGCT 1 cut(s) 595
AluI AGCT 1 cut(s) 595
Alw21I GWGCWC 1 cut(s) 555
AlwNI CAGNNNCTG 1 cut(s) 323
ApeKI GCWGC 5 cut(s) 133, 136, 193, 196, 268
AsiGI ACCGGT 1 cut(s) 371
Asp700I GAANNNNTTC 2 cut(s) 312, 594
AspLEI GCGC 1 cut(s) 572
AsuC2I CCSGG 2 cut(s) 477, 600
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 3 cut(s) 95, 539, 569
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 5 cut(s) 145, 148, 205, 208, 280
BccI CCATC 2 cut(s) 286, 445
BciT130I CCWGG 2 cut(s) 318, 557
BcnI CCSGG 2 cut(s) 477, 600
BfaI CTAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 573
BisI GCNGC 5 cut(s) 134, 137, 194, 197, 269
BlsI GCNGC 5 cut(s) 135, 138, 195, 198, 270
Bme1390I CCNGG 4 cut(s) 318, 477, 557, 600
BmiI GGNNCC 4 cut(s) 59, 97, 541, 571
BmrFI CCNGG 4 cut(s) 318, 477, 557, 600
BmrI ACTGGG 4 cut(s) 120, 387, 402, 492
BmsI GCATC 2 cut(s) 238, 462
BmuI ACTGGG 4 cut(s) 120, 387, 402, 492
BpmI CTGGAG 1 cut(s) 444
BpuMI CCSGG 2 cut(s) 477, 600
BsaHI GRCGYC 3 cut(s) 411, 570, 607
BsaJI CCNNGG 2 cut(s) 476, 573
BsaWI WCCGGW 3 cut(s) 80, 371, 545
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 260, 323, 378, 422, 482, 536
Bse118I RCCGGY 1 cut(s) 371
BseBI CCWGG 2 cut(s) 318, 557
BseDI CCNNGG 2 cut(s) 476, 573
BseGI GGATG 6 cut(s) 52, 294, 346, 387, 453, 499
BseLI CCNNNNNNNGG 7 cut(s) 43, 260, 323, 378, 422, 482, 536
BseMII CTCAG 1 cut(s) 524
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 5 cut(s) 145, 148, 205, 208, 280
BshNI GGYRCC 3 cut(s) 95, 539, 569
BshTI ACCGGT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 5 cut(s) 81, 372, 476, 546, 600
BslFI GGGAC 2 cut(s) 253, 493
BslI CCNNNNNNNGG 7 cut(s) 43, 260, 323, 378, 422, 482, 536
BsmFI GGGAC 2 cut(s) 253, 493
BsmI GAATGC 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 399, 555
Bsp143I GATC 2 cut(s) 300, 582
Bsp19I CCATGG 1 cut(s) 573
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 4 cut(s) 59, 97, 541, 571
BspT107I GGYRCC 3 cut(s) 95, 539, 569
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 476, 573
BssMI GATC 2 cut(s) 300, 582
BssNI GRCGYC 3 cut(s) 411, 570, 607
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 318, 557
Bst4CI ACNGT 2 cut(s) 401, 536
BstACI GRCGYC 3 cut(s) 411, 570, 607
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 6 cut(s) 52, 294, 346, 387, 453, 499
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 2 cut(s) 303, 585
BstMBI GATC 2 cut(s) 300, 582
BstNI CCWGG 2 cut(s) 318, 557
BstSCI CCNGG 4 cut(s) 316, 475, 555, 598
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 5 cut(s) 145, 148, 205, 208, 280
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 6 cut(s) 52, 294, 346, 387, 453, 499
BtsIMutI CAGTG 2 cut(s) 102, 420
CaiI CAGNNNCTG 1 cut(s) 323
CfoI GCGC 1 cut(s) 572
Cfr10I RCCGGY 1 cut(s) 371
CseI GACGC 1 cut(s) 419
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 4 cut(s) 43, 160, 220, 574
CviJI RGCY 2 cut(s) 87, 595
CviKI_1 RGCY 2 cut(s) 87, 595
DdeI CTNAG 1 cut(s) 510
DinI GGCGCC 1 cut(s) 571
DpnI GATC 2 cut(s) 302, 584
DpnII GATC 2 cut(s) 300, 582
Eco130I CCWWGG 1 cut(s) 573
EcoRII CCWGG 2 cut(s) 316, 555
EcoT14I CCWWGG 1 cut(s) 573
EgeI GGCGCC 1 cut(s) 571
EheI GGCGCC 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 4 cut(s) 46, 163, 223, 577
FaiI YATR 6 cut(s) 24, 44, 54, 161, 221, 575
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 2 cut(s) 253, 493
FatI CATG 4 cut(s) 42, 159, 219, 573
Fnu4HI GCNGC 5 cut(s) 134, 137, 194, 197, 269
FokI GGATG 6 cut(s) 59, 301, 353, 394, 460, 506
Fsp4HI GCNGC 5 cut(s) 134, 137, 194, 197, 269
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 571
GluI GCNGC 5 cut(s) 134, 137, 194, 197, 269
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 573
HapII CCGG 5 cut(s) 81, 372, 476, 546, 600
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 572
Hin1I GRCGYC 3 cut(s) 411, 570, 607
Hin1II CATG 4 cut(s) 46, 163, 223, 577
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 64, 313
HpaII CCGG 5 cut(s) 81, 372, 476, 546, 600
Hpy166II GTNNAC 4 cut(s) 258, 332, 420, 605
Hpy188I TCNGA 2 cut(s) 15, 513
Hpy8I GTNNAC 4 cut(s) 258, 332, 420, 605
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 2 cut(s) 401, 536
HpyCH4IV ACGT 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 334
Hsp92I GRCGYC 3 cut(s) 411, 570, 607
Hsp92II CATG 4 cut(s) 46, 163, 223, 577
HspAI GCGC 1 cut(s) 570
KasI GGCGCC 1 cut(s) 569
Kzo9I GATC 2 cut(s) 300, 582
Lsp1109I GCAGC 5 cut(s) 145, 148, 205, 208, 280
LweI GCATC 2 cut(s) 238, 462
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 302, 584
MboI GATC 2 cut(s) 300, 582
MboII GAAGA 1 cut(s) 449
MhlI GDGCHC 2 cut(s) 399, 555
MluCI AATT 1 cut(s) 7
Mly113I GGCGCC 1 cut(s) 570
MnlI CCTC 9 cut(s) 77, 122, 143, 182, 203, 257, 278, 419, 483
MroXI GAANNNNTTC 2 cut(s) 312, 594
MseI TTAA 1 cut(s) 613
MspI CCGG 5 cut(s) 81, 372, 476, 546, 600
MspR9I CCNGG 4 cut(s) 318, 477, 557, 600
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 318, 557
NarI GGCGCC 1 cut(s) 570
NciI CCSGG 2 cut(s) 477, 600
NcoI CCATGG 1 cut(s) 573
NdeII GATC 2 cut(s) 300, 582
NlaIII CATG 4 cut(s) 46, 163, 223, 577
NlaIV GGNNCC 4 cut(s) 59, 97, 541, 571
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 2 cut(s) 312, 594
PfeI GAWTC 2 cut(s) 64, 313
PflFI GACNNNGTC 1 cut(s) 458
PflMI CCANNNNNTGG 2 cut(s) 43, 323
PfoI TCCNGGA 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 5 cut(s) 135, 138, 195, 198, 270
PluTI GGCGCC 1 cut(s) 573
Psp6I CCWGG 2 cut(s) 316, 555
PspGI CCWGG 2 cut(s) 316, 555
PspN4I GGNNCC 4 cut(s) 59, 97, 541, 571
PstNI CAGNNNCTG 1 cut(s) 323
PsyI GACNNNGTC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 5 cut(s) 134, 137, 194, 197, 269
Sau3AI GATC 2 cut(s) 300, 582
ScrFI CCNGG 4 cut(s) 318, 477, 557, 600
SduI GDGCHC 2 cut(s) 399, 555
SetI ASST 6 cut(s) 154, 214, 337, 462, 532, 597
SfaNI GCATC 2 cut(s) 238, 462
SfoI GGCGCC 1 cut(s) 571
Sse9I AATT 1 cut(s) 7
SspDI GGCGCC 1 cut(s) 569
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 4 cut(s) 316, 475, 555, 598
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 2 cut(s) 401, 536
TaiI ACGT 1 cut(s) 337
TaqI TCGA 1 cut(s) 359
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 64, 313
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TscAI CASTG 2 cut(s) 109, 427
TseI GCWGC 5 cut(s) 133, 136, 193, 196, 268
TspDTI ATGAA 1 cut(s) 510
TspRI CASTG 2 cut(s) 109, 427
Tth111I GACNNNGTC 1 cut(s) 458
Van91I CCANNNNNTGG 2 cut(s) 43, 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmnI GAANNNNTTC 2 cut(s) 312, 594
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.