Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11658186 .. 11659876

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1139900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCGCATCTGCATAATCAACACGGGGCACAGCCAACCGACGCCTACGGCAACCCGATCCAGAGAACCGACGAGTACGGGAACCCACTTGGCGGTGCTACTACAGGTGCCACCACCGGAGGATACGGTGCTCATGACACAGCCGCTGCGACCACTGGTCACGATTACGGCAGGAAAGAGCACCATGGTGTCACTGGCGCGCTCCACCGCTCTGGCAGCTCAAGCTCTAGCTCTTCGGAGGATGATGGGCTAGGTGGGAGGAGGAAGAAGAAGGGGTTGAAACAGAAGATAAAGGAGAAGCTCCCGGGATCAACCACGACTGAGACAACTTACGGCACCGCTGGCACCACCTACCCAGGAGGGCACCAACAGGAAAAGGGGATGATGGACAAGATCAAGGACAAGCTGCCGGGTACTGGCCACAAGGATGACCCCCACTACTCAACCACAACACATGCTAGTACGACCACAACTCCCTACGGCGGTGCCACCTACACGGAGGAGCACCACGAAAAGAAGGGGATCATGGACAAGATCAAAGAGAAGCTTCCCGGAGGAAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

189

Amino Acids

19.87

Weight (kDa)

8.61

Isoelectric Point (pI)

22.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	11 - 139	4.2e-30	Dehydrin
Dehydrin	PF00257	120 - 186	2.4e-17	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	107, 335, 344, 363, 485
AccBSI	CCGCTC	1 cut(s)	210
AccII	CGCG	1 cut(s)	200
AciI	CCGC	5 cut(s)	93, 144, 208, 339, 483
AclWI	GGATC	3 cut(s)	52, 316, 530
AcoI	YGGCCR	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	77, 415, 463
AfiI	CCNNNNNNNGG	3 cut(s)	92, 416, 482
AgsI	TTSAA	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	6 cut(s)	219, 225, 231, 301, 406, 547
AluI	AGCT	6 cut(s)	219, 225, 231, 301, 406, 547
Alw21I	GWGCWC	3 cut(s)	133, 183, 507
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	3 cut(s)	52, 316, 530
AlwNI	CAGNNNCTG	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	3 cut(s)	146, 216, 406
AspLEI	GCGC	2 cut(s)	200, 202
AsuC2I	CCSGG	4 cut(s)	305, 306, 411, 552
AvaI	CYCGRG	1 cut(s)	304
BaeGI	GKGCMC	2 cut(s)	31, 366
BalI	TGGCCA	1 cut(s)	420
BanI	GGYRCC	5 cut(s)	107, 335, 344, 363, 485
Bbv12I	GWGCWC	3 cut(s)	133, 183, 507
BbvI	GCAGC	3 cut(s)	133, 228, 393
BccI	CCATC	2 cut(s)	239, 379
BceAI	ACGGC	4 cut(s)	64, 184, 349, 496
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	116
BcnI	CCSGG	4 cut(s)	305, 306, 411, 552
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	3 cut(s)	228, 251, 459
BfmI	CTRYAG	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	4 cut(s)	144, 147, 217, 407
BlsI	GCNGC	4 cut(s)	145, 148, 218, 408
Bme1390I	CCNGG	5 cut(s)	305, 306, 357, 411, 552
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	304
BmiI	GGNNCC	6 cut(s)	83, 109, 337, 346, 365, 487
BmrFI	CCNGG	5 cut(s)	305, 306, 357, 411, 552
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	4 cut(s)	305, 306, 411, 552
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	184, 304, 355
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 416, 482
Bse1I	ACTGG	4 cut(s)	160, 199, 421, 562
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	184, 304, 355
BseGI	GGATG	3 cut(s)	247, 387, 433
BseLI	CCNNNNNNNGG	3 cut(s)	92, 416, 482
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	4 cut(s)	160, 199, 421, 562
BsePI	GCGCGC	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	274, 515
BseSI	GKGCMC	2 cut(s)	31, 366
BseXI	GCAGC	3 cut(s)	133, 228, 393
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	5 cut(s)	107, 335, 344, 363, 485
BsiHKAI	GWGCWC	3 cut(s)	133, 183, 507
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	4 cut(s)	117, 305, 410, 552
BslI	CCNNNNNNNGG	3 cut(s)	92, 416, 482
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	304
Bsp1286I	GDGCHC	5 cut(s)	31, 133, 183, 366, 507
Bsp143I	GATC	5 cut(s)	57, 308, 393, 522, 534
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	5 cut(s)	93, 144, 208, 339, 483
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	6 cut(s)	83, 109, 337, 346, 365, 487
BspPI	GGATC	3 cut(s)	52, 316, 530
BspQI	GCTCTTC	1 cut(s)	238
BspT107I	GGYRCC	5 cut(s)	107, 335, 344, 363, 485
BsrBI	CCGCTC	1 cut(s)	210
BsrI	ACTGG	4 cut(s)	160, 199, 421, 562
BssECI	CCNNGG	3 cut(s)	184, 304, 355
BssHII	GCGCGC	1 cut(s)	198
BssMI	GATC	5 cut(s)	57, 308, 393, 522, 534
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	200, 343
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	247, 387, 433
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	200, 202
BstKTI	GATC	5 cut(s)	60, 311, 396, 525, 537
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	5 cut(s)	57, 308, 393, 522, 534
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 222, 342
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	5 cut(s)	303, 304, 355, 409, 550
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	2 cut(s)	31, 366
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	133, 228, 393
BstXI	CCANNNNNNTGG	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	247, 387, 433
BtsIMutI	CAGTG	2 cut(s)	153, 192
Cac8I	GCNNGC	2 cut(s)	200, 343
CaiI	CAGNNNCTG	1 cut(s)	146
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	2 cut(s)	200, 202
Cfr9I	CCCGGG	1 cut(s)	304
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	76, 414, 462
CviAII	CATG	4 cut(s)	134, 185, 455, 526
CviQI	GTAC	3 cut(s)	76, 414, 462
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	5 cut(s)	59, 310, 395, 524, 536
DpnII	GATC	5 cut(s)	57, 308, 393, 522, 534
DriI	GACNNNNNGTC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	4 cut(s)	137, 188, 458, 529
FaiI	YATR	5 cut(s)	15, 135, 186, 456, 527
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	4 cut(s)	133, 184, 454, 525
Fnu4HI	GCNGC	4 cut(s)	144, 147, 217, 407
FokI	GGATG	3 cut(s)	254, 394, 440
Fsp4HI	GCNGC	4 cut(s)	144, 147, 217, 407
FspBI	CTAG	3 cut(s)	228, 251, 459
GlaI	GCGC	2 cut(s)	199, 201
GluI	GCNGC	4 cut(s)	144, 147, 217, 407
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	4 cut(s)	117, 305, 410, 552
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	2 cut(s)	200, 202
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	137, 188, 458, 529
Hin6I	GCGC	2 cut(s)	198, 200
HinP1I	GCGC	2 cut(s)	198, 200
HindIII	AAGCTT	1 cut(s)	545
HpaII	CCGG	4 cut(s)	117, 305, 410, 552
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	61, 134, 161
Hpy99I	CGWCG	2 cut(s)	44, 74
HpyAV	CCTTC	2 cut(s)	265, 511
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 222, 342
HpyF3I	CTNAG	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	137, 188, 458, 529
HspAI	GCGC	2 cut(s)	198, 200
Kzo9I	GATC	5 cut(s)	57, 308, 393, 522, 534
LguI	GCTCTTC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	207, 306, 502
Lsp1109I	GCAGC	3 cut(s)	133, 228, 393
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	228, 251, 459
MaeIII	GTNAC	2 cut(s)	158, 190
MalI	GATC	5 cut(s)	59, 310, 395, 524, 536
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	5 cut(s)	57, 308, 393, 522, 534
MboII	GAAGA	4 cut(s)	225, 277, 280, 298
MhlI	GDGCHC	5 cut(s)	31, 133, 183, 366, 507
MlsI	TGGCCA	1 cut(s)	420
MluNI	TGGCCA	1 cut(s)	420
MnlI	CCTC	7 cut(s)	113, 232, 252, 255, 353, 493, 548
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
MslI	CAYNNNNRTG	2 cut(s)	186, 426
Msp20I	TGGCCA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	146, 341
MspI	CCGG	4 cut(s)	117, 305, 410, 552
MspR9I	CCNGG	5 cut(s)	305, 306, 357, 411, 552
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	216, 222, 342
NciI	CCSGG	4 cut(s)	305, 306, 411, 552
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	5 cut(s)	57, 308, 393, 522, 534
NlaIII	CATG	4 cut(s)	137, 188, 458, 529
NlaIV	GGNNCC	6 cut(s)	83, 109, 337, 346, 365, 487
NmuCI	GTSAC	2 cut(s)	158, 190
NspI	RCATGY	1 cut(s)	458
OliI	CACNNNNGTG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	133
PauI	GCGCGC	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	145, 148, 218, 408
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	6 cut(s)	83, 109, 337, 346, 365, 487
PstNI	CAGNNNCTG	1 cut(s)	146
PteI	GCGCGC	1 cut(s)	198
RsaI	GTAC	3 cut(s)	77, 415, 463
RsaNI	GTAC	3 cut(s)	76, 414, 462
RseI	CAYNNNNRTG	2 cut(s)	186, 426
SapI	GCTCTTC	1 cut(s)	238
SatI	GCNGC	4 cut(s)	144, 147, 217, 407
Sau3AI	GATC	5 cut(s)	57, 308, 393, 522, 534
ScrFI	CCNGG	5 cut(s)	305, 306, 357, 411, 552
SduI	GDGCHC	5 cut(s)	31, 133, 183, 366, 507
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	102
SmaI	CCCGGG	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	186, 426
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SsiI	CCGC	5 cut(s)	93, 144, 208, 339, 483
SspMI	CTAG	3 cut(s)	228, 251, 459
StyD4I	CCNGG	5 cut(s)	303, 304, 355, 409, 550
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	128
TauI	GCSGC	1 cut(s)	146
TscAI	CASTG	2 cut(s)	160, 199
TseFI	GTSAC	2 cut(s)	158, 190
TseI	GCWGC	3 cut(s)	146, 216, 406
Tsp45I	GTSAC	2 cut(s)	158, 190
TspGWI	ACGGA	1 cut(s)	512
TspMI	CCCGGG	1 cut(s)	304
TspRI	CASTG	2 cut(s)	160, 199
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XmaI	CCCGGG	1 cut(s)	304
XspI	CTAG	3 cut(s)	228, 251, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.