Rmu_sc0000528.1_g000022

Belongs to the plant dehydrin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000528.1
Physical Location & Seq
Forward (+)
92635 .. 93173
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000528.1_g000022.1.cds

Sequence Viewer

Length: 330 bp
atggcgcattaccagagtcagtacagcagagacaagaccaccgacgagttcggaaacccgatccgcaggactgaagacccggttcaccacggtgtaactgaagcaaccggcgggtacggcactcatgacactagatcgaacaagtctgaggatgatgggtacggcgggaggaggaagaagaagggtttgaaggagaagatcaagaagaagctgccaggcggcaacagtgaccatagcggcacaactaatacgccaccgtttgataccagagcccatgagaagaagggcatgatggacaagatcaaagagaagcttcccggccaccattaa

Protein Analysis

109

Amino Acids

12.23

Weight (kDa)

9.55

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000632)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 64, 111, 165, 219, 237
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 319
AcuI CTGAAG 2 cut(s) 93, 120
AfaI GTAC 3 cut(s) 23, 116, 161
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 214
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 2 cut(s) 211, 313
AluI AGCT 2 cut(s) 211, 313
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 2 cut(s) 80, 318
AsuHPI GGTGA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 149, 286
BceAI ACGGC 2 cut(s) 133, 178
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 2 cut(s) 80, 318
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 212, 220, 238
BlsI GCNGC 3 cut(s) 213, 221, 239
Bme1390I CCNGG 3 cut(s) 80, 216, 318
BmrFI CCNGG 3 cut(s) 80, 216, 318
BpiI GAAGAC 1 cut(s) 81
BpuMI CCSGG 2 cut(s) 80, 318
BsaJI CCNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 107
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 321
BsiSI CCGG 3 cut(s) 80, 108, 318
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 4 cut(s) 60, 134, 198, 300
BspACI CCGC 5 cut(s) 64, 111, 165, 219, 237
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 4 cut(s) 60, 134, 198, 300
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 92, 227, 258
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 63, 137, 201, 303
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 4 cut(s) 60, 134, 198, 300
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 3 cut(s) 78, 214, 316
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 232
CciI TCATGA 1 cut(s) 124
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 107
Csp6I GTAC 3 cut(s) 22, 115, 160
CviAII CATG 3 cut(s) 125, 275, 289
CviJI RGCY 4 cut(s) 211, 272, 313, 321
CviKI_1 RGCY 4 cut(s) 211, 272, 313, 321
CviQI GTAC 3 cut(s) 22, 115, 160
DdeI CTNAG 1 cut(s) 147
DpnI GATC 4 cut(s) 62, 136, 200, 302
DpnII GATC 4 cut(s) 60, 134, 198, 300
EaeI YGGCCR 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 93, 120
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 274
FaeI CATG 3 cut(s) 128, 278, 292
FaiI YATR 4 cut(s) 126, 234, 276, 290
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 3 cut(s) 124, 274, 288
FauI CCCGC 2 cut(s) 104, 158
Fnu4HI GCNGC 3 cut(s) 212, 220, 238
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 3 cut(s) 212, 220, 238
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 212, 220, 238
HaeIII GGCC 1 cut(s) 321
HapII CCGG 3 cut(s) 80, 108, 318
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 128, 278, 292
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 16
HpaII CCGG 3 cut(s) 80, 108, 318
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 53, 148
Hpy188III TCNNGA 2 cut(s) 125, 202
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 175, 184, 277
HpyCH4III ACNGT 3 cut(s) 92, 227, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 128, 278, 292
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 60, 134, 198, 300
LpnPI CCDG 7 cut(s) 26, 52, 93, 121, 201, 228, 280
Lsp1109I GCAGC 1 cut(s) 198
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 94, 227
MalI GATC 4 cut(s) 62, 136, 200, 302
MboI GATC 4 cut(s) 60, 134, 198, 300
MboII GAAGA 6 cut(s) 86, 187, 190, 208, 217, 292
MhlI GDGCHC 1 cut(s) 274
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 3 cut(s) 142, 162, 165
MseI TTAA 1 cut(s) 328
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 3 cut(s) 80, 108, 318
MspR9I CCNGG 3 cut(s) 80, 216, 318
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 2 cut(s) 80, 318
NdeII GATC 4 cut(s) 60, 134, 198, 300
NlaIII CATG 3 cut(s) 128, 278, 292
NmuCI GTSAC 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 90
PagI TCATGA 1 cut(s) 124
PkrI GCNGC 3 cut(s) 213, 221, 239
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
RsaI GTAC 3 cut(s) 23, 116, 161
RsaNI GTAC 3 cut(s) 22, 115, 160
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 328
SatI GCNGC 3 cut(s) 212, 220, 238
Sau3AI GATC 4 cut(s) 60, 134, 198, 300
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 80, 216, 318
SduI GDGCHC 1 cut(s) 274
SetI ASST 2 cut(s) 213, 315
SmiMI CAYNNNNRTG 1 cut(s) 90
SsiI CCGC 5 cut(s) 64, 111, 165, 219, 237
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 78, 214, 316
TaaI ACNGT 3 cut(s) 92, 227, 258
TaqI TCGA 1 cut(s) 137
TatI WGTACW 1 cut(s) 21
TauI GCSGC 2 cut(s) 222, 240
Tru1I TTAA 1 cut(s) 328
Tru9I TTAA 1 cut(s) 328
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 227
TspRI CASTG 1 cut(s) 232
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.