Rmu_sc0023932.1_g000001

Belongs to the plant dehydrin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023932.1
Physical Location & Seq
Reverse (-)
508 .. 1013
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023932.1_g000001.1.cds

Sequence Viewer

Length: 297 bp
atggcgcattaccagagtcagtacagcagagacaagaccaccgacgagttcggaaacccgatccgcaggactgaagacccggttcaccacggtgtaactgaagcaaccggcgggtacggcactcatgacactagatcgaacaagtctgaggatgatgggtacggcgggaggaggaagaagaagggtttgaaggagaagatcaagaagaagctgccaggcggcagcagtgaccatagcggtgttgagaatatatacatgccacatgggaaaaatgggaacttgctagtgggtttataa

Protein Analysis

98

Amino Acids

10.83

Weight (kDa)

9.36

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000632)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 295
AciI CCGC 5 cut(s) 64, 111, 165, 219, 237
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 2 cut(s) 93, 120
AfaI GTAC 3 cut(s) 23, 116, 161
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 214
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 211, 222
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 198, 234
BccI CCATC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 133, 178
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 132, 284
BisI GCNGC 3 cut(s) 212, 220, 223
BlsI GCNGC 3 cut(s) 213, 221, 224
Bme1390I CCNGG 2 cut(s) 80, 216
BmrFI CCNGG 2 cut(s) 80, 216
BpiI GAAGAC 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 107
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 198, 234
BsiSI CCGG 2 cut(s) 80, 108
BsmAI GTCTC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 60, 134, 198
BspACI CCGC 5 cut(s) 64, 111, 165, 219, 237
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 60, 134, 198
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 63, 137, 201
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 60, 134, 198
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 2 cut(s) 78, 214
BstV1I GCAGC 2 cut(s) 198, 234
BstV2I GAAGAC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
CciI TCATGA 1 cut(s) 124
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 107
Csp6I GTAC 3 cut(s) 22, 115, 160
CviAII CATG 3 cut(s) 125, 256, 263
CviJI RGCY 1 cut(s) 211
CviKI_1 RGCY 1 cut(s) 211
CviQI GTAC 3 cut(s) 22, 115, 160
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 62, 136, 200
DpnII GATC 3 cut(s) 60, 134, 198
Eco57I CTGAAG 2 cut(s) 93, 120
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 128, 259, 266
FaiI YATR 7 cut(s) 126, 234, 251, 253, 257, 264, 295
FatI CATG 3 cut(s) 124, 255, 262
FauI CCCGC 2 cut(s) 104, 158
Fnu4HI GCNGC 3 cut(s) 212, 220, 223
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 212, 220, 223
FspBI CTAG 2 cut(s) 132, 284
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 212, 220, 223
HapII CCGG 2 cut(s) 80, 108
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 128, 259, 266
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 16
HpaII CCGG 2 cut(s) 80, 108
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 53, 148
Hpy188III TCNNGA 2 cut(s) 125, 202
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 175, 184
HpyCH4III ACNGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 128, 259, 266
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 60, 134, 198
LpnPI CCDG 6 cut(s) 26, 52, 93, 121, 201, 228
Lsp1109I GCAGC 2 cut(s) 198, 234
MaeI CTAG 2 cut(s) 132, 284
MaeIII GTNAC 2 cut(s) 94, 227
MalI GATC 3 cut(s) 62, 136, 200
MboI GATC 3 cut(s) 60, 134, 198
MboII GAAGA 5 cut(s) 86, 187, 190, 208, 217
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 3 cut(s) 142, 162, 165
MslI CAYNNNNRTG 2 cut(s) 90, 237
MspI CCGG 2 cut(s) 80, 108
MspR9I CCNGG 2 cut(s) 80, 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 117
NciI CCSGG 1 cut(s) 80
NdeII GATC 3 cut(s) 60, 134, 198
NlaIII CATG 3 cut(s) 128, 259, 266
NmuCI GTSAC 1 cut(s) 227
NspI RCATGY 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 90
PagI TCATGA 1 cut(s) 124
PkrI GCNGC 3 cut(s) 213, 221, 224
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
RsaI GTAC 3 cut(s) 23, 116, 161
RsaNI GTAC 3 cut(s) 22, 115, 160
RseI CAYNNNNRTG 2 cut(s) 90, 237
SatI GCNGC 3 cut(s) 212, 220, 223
Sau3AI GATC 3 cut(s) 60, 134, 198
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 80, 216
SetI ASST 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 90, 237
SsiI CCGC 5 cut(s) 64, 111, 165, 219, 237
SspMI CTAG 2 cut(s) 132, 284
StyD4I CCNGG 2 cut(s) 78, 214
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 137
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 222
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 211, 222
Tsp45I GTSAC 1 cut(s) 227
TspRI CASTG 1 cut(s) 232
XceI RCATGY 1 cut(s) 259
XspI CTAG 2 cut(s) 132, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.