Rh2CG144000

Belongs to the plant dehydrin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
12669150 .. 12670611
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG144000.1

Sequence Viewer

Length: 741 bp
ATGGAGCATTACCAGAGCGAGTACGGTAGAGACAAGACCACCGACGAGATCCGCCGGAGTGAGGACCCGGTTAACCATGGTTTAACTGAAGCAACCGGCATTCATGACACTAAAACAGGCTACGGAACTCATGGCATGGCCACTGGGCCCACTGGCTTCGCTGCAACAACGGCCGGTGGTCACGGGTTCCCGAATCACCGGTCTGACATCTCAAGCTCTTCTGAGGATGATGGGTACGGAGGGAGAAGGGAGAGGAAGGGTTTGAAGGAGAAGATGCCAGGTGGCACACACCGGTCCGACGACCCCTACGATACGACTCCGATTACCACACCTTATGGTGGACAGCACCAGGATAAGGGAGTGATGGACAAACTCAAAGAGAAGCTCCCAGGAGGTCATAAGGACGATCCCCACAGTACAACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGGTGGTCACAAGGATGATCCCTACAGTACTACTGACACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGCTTGAAGGAGAAGATTGAGAAGCTGCCAGGTGGCAACAGTGACCATAGCGGCACTACTAATACGCCACCTTTTGACACCAGAGCCCATGAGAAGAAGGGATTGATGGACAAGATTAAAGAGAAGCTTCCCGGCCACCACTAA

Protein Analysis

246

Amino Acids

26.63

Weight (kDa)

6.36

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 26 - 133 6.8e-15 Dehydrin
Dehydrin PF00257 113 - 173 4.4e-15 Dehydrin
Dehydrin PF00257 199 - 246 7.5e-11 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000632)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 52, 648
AclWI GGATC 3 cut(s) 43, 401, 521
AcoI YGGCCR 5 cut(s) 138, 171, 453, 573, 730
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 4 cut(s) 23, 236, 418, 538
AfiI CCNNNNNNNGG 5 cut(s) 61, 338, 355, 446, 566
AgeI ACCGGT 2 cut(s) 198, 291
AgsI TTSAA 2 cut(s) 265, 604
AjnI CCWGG 5 cut(s) 277, 348, 388, 508, 625
AluBI AGCT 5 cut(s) 216, 385, 505, 622, 724
AluI AGCT 5 cut(s) 216, 385, 505, 622, 724
Alw21I GWGCWC 2 cut(s) 465, 585
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 3 cut(s) 43, 401, 521
AoxI GGCC 6 cut(s) 138, 146, 171, 453, 573, 730
ApaI GGGCCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 161, 622
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsiGI ACCGGT 2 cut(s) 198, 291
AspS9I GGNCC 4 cut(s) 64, 146, 147, 294
AsuC2I CCSGG 4 cut(s) 68, 441, 561, 729
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 2 cut(s) 64, 294
BaeGI GKGCMC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 140
BanII GRGCYC 2 cut(s) 150, 685
Bbv12I GWGCWC 2 cut(s) 465, 585
BbvI GCAGC 2 cut(s) 148, 609
BccI CCATC 3 cut(s) 224, 358, 697
BceAI ACGGC 3 cut(s) 186, 463, 583
BciT130I CCWGG 5 cut(s) 279, 350, 390, 510, 627
BcnI CCSGG 4 cut(s) 68, 441, 561, 729
BcoDI GTCTC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 532
BisI GCNGC 3 cut(s) 162, 623, 649
BlsI GCNGC 3 cut(s) 163, 624, 650
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 9 cut(s) 68, 279, 350, 390, 441, 510, 561, 627, 729
Bme18I GGWCC 2 cut(s) 64, 294
BmgT120I GGNCC 4 cut(s) 64, 146, 147, 294
BmiI GGNNCC 3 cut(s) 66, 148, 188
BmrFI CCNGG 9 cut(s) 68, 279, 350, 390, 441, 510, 561, 627, 729
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 196
BpuMI CCSGG 4 cut(s) 68, 441, 561, 729
BsaJI CCNNGG 2 cut(s) 76, 388
BsaWI WCCGGW 2 cut(s) 198, 291
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 338, 355, 446, 566
Bse118I RCCGGY 4 cut(s) 95, 173, 198, 291
Bse1I ACTGG 2 cut(s) 148, 157
BseBI CCWGG 5 cut(s) 279, 350, 390, 510, 627
BseDI CCNNGG 2 cut(s) 76, 388
BseGI GGATG 2 cut(s) 232, 529
BseLI CCNNNNNNNGG 5 cut(s) 61, 338, 355, 446, 566
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 148, 157
BseSI GKGCMC 1 cut(s) 150
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 148, 609
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 6 cut(s) 140, 148, 173, 455, 575, 732
BshTI ACCGGT 2 cut(s) 198, 291
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 465, 585
BslI CCNNNNNNNGG 5 cut(s) 61, 338, 355, 446, 566
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 6 cut(s) 140, 148, 173, 455, 575, 732
Bsp120I GGGCCC 1 cut(s) 146
Bsp1286I GDGCHC 4 cut(s) 150, 465, 585, 685
Bsp143I GATC 4 cut(s) 48, 406, 492, 526
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 2 cut(s) 52, 648
BspANI GGCC 6 cut(s) 140, 148, 173, 455, 575, 732
BspCNI CTCAG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 66, 148, 188
BspPI GGATC 3 cut(s) 43, 401, 521
BspQI GCTCTTC 1 cut(s) 223
BsrFI RCCGGY 4 cut(s) 95, 173, 198, 291
BsrI ACTGG 2 cut(s) 148, 157
BssAI RCCGGY 4 cut(s) 95, 173, 198, 291
BssECI CCNNGG 2 cut(s) 76, 388
BssMI GATC 4 cut(s) 48, 406, 492, 526
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 5 cut(s) 279, 350, 390, 510, 627
Bst4CI ACNGT 4 cut(s) 26, 416, 536, 638
Bst6I CTCTTC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 232, 529
BstKTI GATC 4 cut(s) 51, 409, 495, 529
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 4 cut(s) 48, 406, 492, 526
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 5 cut(s) 279, 350, 390, 510, 627
BstSCI CCNGG 9 cut(s) 66, 277, 348, 388, 439, 508, 559, 625, 727
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 148, 609
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 6 cut(s) 140, 148, 173, 455, 575, 732
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 232, 529
BtsIMutI CAGTG 3 cut(s) 141, 150, 643
CciI TCATGA 1 cut(s) 103
Cfr10I RCCGGY 4 cut(s) 95, 173, 198, 291
Cfr13I GGNCC 4 cut(s) 64, 146, 147, 294
CpoI CGGWCCG 1 cut(s) 294
CsiI ACCWGGT 1 cut(s) 508
Csp6I GTAC 4 cut(s) 22, 235, 417, 537
CspAI ACCGGT 2 cut(s) 198, 291
CspI CGGWCCG 1 cut(s) 294
CviAII CATG 7 cut(s) 77, 104, 131, 136, 467, 587, 686
CviQI GTAC 4 cut(s) 22, 235, 417, 537
DdeI CTNAG 1 cut(s) 222
DpnI GATC 4 cut(s) 50, 408, 494, 528
DpnII GATC 4 cut(s) 48, 406, 492, 526
EaeI YGGCCR 5 cut(s) 138, 171, 453, 573, 730
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 41
EclXI CGGCCG 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 2 cut(s) 150, 685
Eco47I GGWCC 2 cut(s) 64, 294
Eco52I CGGCCG 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 5 cut(s) 277, 348, 388, 508, 625
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 2 cut(s) 150, 685
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 7 cut(s) 80, 107, 134, 139, 470, 590, 689
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 7 cut(s) 76, 103, 130, 135, 466, 586, 685
Fnu4HI GCNGC 3 cut(s) 162, 623, 649
FokI GGATG 2 cut(s) 239, 536
FriOI GRGCYC 2 cut(s) 150, 685
Fsp4HI GCNGC 3 cut(s) 162, 623, 649
GluI GCNGC 3 cut(s) 162, 623, 649
HaeIII GGCC 6 cut(s) 140, 148, 173, 455, 575, 732
Hin1II CATG 7 cut(s) 80, 107, 134, 139, 470, 590, 689
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 2 cut(s) 193, 316
HpaI GTTAAC 1 cut(s) 73
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 3 cut(s) 73, 341, 487
Hpy188I TCNGA 4 cut(s) 205, 223, 298, 321
Hpy188III TCNNGA 2 cut(s) 104, 190
Hpy8I GTNNAC 3 cut(s) 73, 341, 487
Hpy99I CGWCG 2 cut(s) 47, 302
HpyAV CCTTC 5 cut(s) 240, 250, 259, 598, 688
HpyCH4III ACNGT 4 cut(s) 26, 416, 536, 638
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 7 cut(s) 80, 107, 134, 139, 470, 590, 689
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 48, 406, 492, 526
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 4, 390
Lsp1109I GCAGC 2 cut(s) 148, 609
LweI GCATC 1 cut(s) 264
MabI ACCWGGT 1 cut(s) 508
MaeIII GTNAC 5 cut(s) 179, 443, 515, 563, 638
MalI GATC 4 cut(s) 50, 408, 494, 528
MboI GATC 4 cut(s) 48, 406, 492, 526
MboII GAAGA 4 cut(s) 210, 283, 622, 703
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 4 cut(s) 150, 465, 585, 685
MlsI TGGCCA 1 cut(s) 140
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 5 cut(s) 55, 217, 233, 246, 386
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 3 cut(s) 72, 83, 714
MslI CAYNNNNRTG 1 cut(s) 522
Msp20I TGGCCA 1 cut(s) 140
MspR9I CCNGG 9 cut(s) 68, 279, 350, 390, 441, 510, 561, 627, 729
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 5 cut(s) 279, 350, 390, 510, 627
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 4 cut(s) 68, 441, 561, 729
NcoI CCATGG 1 cut(s) 76
NdeII GATC 4 cut(s) 48, 406, 492, 526
NlaIII CATG 7 cut(s) 80, 107, 134, 139, 470, 590, 689
NlaIV GGNNCC 3 cut(s) 66, 148, 188
NmuCI GTSAC 3 cut(s) 179, 515, 638
PagI TCATGA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 193
PinAI ACCGGT 2 cut(s) 198, 291
PkrI GCNGC 3 cut(s) 163, 624, 650
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 5 cut(s) 277, 348, 388, 508, 625
PspGI CCWGG 5 cut(s) 277, 348, 388, 508, 625
PspN4I GGNNCC 3 cut(s) 66, 148, 188
PspOMI GGGCCC 1 cut(s) 146
PspPI GGNCC 4 cut(s) 64, 146, 147, 294
PspPPI RGGWCCY 1 cut(s) 64
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 4 cut(s) 23, 236, 418, 538
RsaNI GTAC 4 cut(s) 22, 235, 417, 537
RseI CAYNNNNRTG 1 cut(s) 522
Rsr2I CGGWCCG 1 cut(s) 294
RsrII CGGWCCG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 72, 83, 714
SatI GCNGC 3 cut(s) 162, 623, 649
Sau3AI GATC 4 cut(s) 48, 406, 492, 526
Sau96I GGNCC 4 cut(s) 64, 146, 147, 294
ScaI AGTACT 1 cut(s) 538
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 9 cut(s) 68, 279, 350, 390, 441, 510, 561, 627, 729
SduI GDGCHC 4 cut(s) 150, 465, 585, 685
SexAI ACCWGGT 1 cut(s) 508
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 532
SinI GGWCC 2 cut(s) 64, 294
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SsiI CCGC 2 cut(s) 52, 648
StyD4I CCNGG 9 cut(s) 66, 277, 348, 388, 439, 508, 559, 625, 727
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 4 cut(s) 26, 416, 536, 638
TatI WGTACW 2 cut(s) 416, 536
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 3 cut(s) 72, 83, 714
Tru9I TTAA 3 cut(s) 72, 83, 714
TscAI CASTG 3 cut(s) 148, 157, 643
TseFI GTSAC 3 cut(s) 179, 515, 638
TseI GCWGC 2 cut(s) 161, 622
Tsp45I GTSAC 3 cut(s) 179, 515, 638
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 2 cut(s) 138, 252
TspRI CASTG 3 cut(s) 148, 157, 643
VpaK11BI GGWCC 2 cut(s) 64, 294
ZrmI AGTACT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.